RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 KIR2DL4Q99706 377 aa11.25□□□□□ -0.61
SHKBP1-219ENST00000599575 CHCHD5Q9BSY4 110 aa11.25□□□□□ -0.61
SHKBP1-219ENST00000599575 TMEM243Q9BU79 118 aa11.25□□□□□ -0.61
SHKBP1-219ENST00000599575 HYDINQ4G0P3 5121 aa11.24□□□□□ -0.61
SHKBP1-219ENST00000599575 PRSS47A8MTI9 375 aa11.24□□□□□ -0.61
SHKBP1-219ENST00000599575 SMKR1H3BMG3 65 aa11.24□□□□□ -0.61
SHKBP1-219ENST00000599575 M0R2N4 97 aa11.24□□□□□ -0.61
SHKBP1-219ENST00000599575 GAS8-AS1O95177 125 aa11.24□□□□□ -0.61
SHKBP1-219ENST00000599575 AMTP48728 403 aa11.24□□□□□ -0.61
SHKBP1-219ENST00000599575 NFE4Q86UQ8 179 aa11.24□□□□□ -0.61
SHKBP1-219ENST00000599575 PRELID3AQ96N28 172 aa11.24□□□□□ -0.61
SHKBP1-219ENST00000599575 SMCO4Q9NRQ5 59 aa11.24□□□□□ -0.61
SHKBP1-219ENST00000599575 IBA57-AS1B1ANH7 110 aa11.23□□□□□ -0.61
SHKBP1-219ENST00000599575 APCSP02743 223 aa11.23□□□□□ -0.61
SHKBP1-219ENST00000599575 C6orf223Q8N319 242 aa11.23□□□□□ -0.61
SHKBP1-219ENST00000599575 DNAH6Q9C0G6 4158 aa11.23□□□□□ -0.61
SHKBP1-219ENST00000599575 A0A1B0GUV1 79 aa11.22□□□□□ -0.61
SHKBP1-219ENST00000599575 TMEM262E9PQX1 116 aa11.22□□□□□ -0.61
SHKBP1-219ENST00000599575 LINC00336Q6ZUF6 198 aa11.22□□□□□ -0.61
SHKBP1-219ENST00000599575 UBE2L6O14933 153 aa11.21□□□□□ -0.61
SHKBP1-219ENST00000599575 SMAGPQ0VAQ4 97 aa11.21□□□□□ -0.61
SHKBP1-219ENST00000599575 ATRAIDQ6UW56 229 aa11.21□□□□□ -0.61
SHKBP1-219ENST00000599575 SMIM2Q9BVW6 85 aa11.21□□□□□ -0.61
SHKBP1-219ENST00000599575 KRTAP1-5Q9BYS1 174 aa11.21□□□□□ -0.61
SHKBP1-219ENST00000599575 TRAV8-3A0A0A6YYJ7 113 aa11.2□□□□□ -0.62
SHKBP1-219ENST00000599575 K7EMI3 77 aa11.2□□□□□ -0.62
SHKBP1-219ENST00000599575 TSHBP01222 138 aa11.2□□□□□ -0.62
SHKBP1-219ENST00000599575 NPYP01303 97 aa11.2□□□□□ -0.62
SHKBP1-219ENST00000599575 FCER1GP30273 86 aa11.2□□□□□ -0.62
SHKBP1-219ENST00000599575 IGHV3-30P01768 117 aa11.19□□□□□ -0.62
SHKBP1-219ENST00000599575 IGHV3-33P01772 117 aa11.19□□□□□ -0.62
SHKBP1-219ENST00000599575 IGHV3-30-3P0DP02 117 aa11.19□□□□□ -0.62
SHKBP1-219ENST00000599575 IGHV3-30-5P0DP03 117 aa11.19□□□□□ -0.62
SHKBP1-219ENST00000599575 ESDP10768 282 aa11.19□□□□□ -0.62
SHKBP1-219ENST00000599575 YPEL4Q96NS1 127 aa11.19□□□□□ -0.62
SHKBP1-219ENST00000599575 MAP1LC3AQ9H492 121 aa11.19□□□□□ -0.62
SHKBP1-219ENST00000599575 TGIF2-C20orf24A0A0A6YYL0 155 aa11.18□□□□□ -0.62
SHKBP1-219ENST00000599575 ZNF25P17030 456 aaPredicted RBP11.18□□□□□ -0.62
SHKBP1-219ENST00000599575 Q0VG73 95 aa11.18□□□□□ -0.62
SHKBP1-219ENST00000599575 TMEM18Q96B42 140 aa11.18□□□□□ -0.62
SHKBP1-219ENST00000599575 COX11Q9Y6N1 276 aa11.18□□□□□ -0.62
SHKBP1-219ENST00000599575 RAB5AP20339 215 aa11.17□□□□□ -0.62
SHKBP1-219ENST00000599575 RBX1P62877 108 aa11.17□□□□□ -0.62
SHKBP1-219ENST00000599575 GAGE6Q13070 117 aa11.17□□□□□ -0.62
SHKBP1-219ENST00000599575 MPV17L2Q567V2 206 aa11.17□□□□□ -0.62
SHKBP1-219ENST00000599575 MRPL18Q9H0U6 180 aaKnown RBP11.17□□□□□ -0.62
SHKBP1-219ENST00000599575 NXT2Q9NPJ8 142 aaKnown RBP11.17□□□□□ -0.62
SHKBP1-219ENST00000599575 FABP9Q0Z7S8 132 aa11.16□□□□□ -0.62
SHKBP1-219ENST00000599575 MRPL52Q86TS9 123 aaKnown RBP11.16□□□□□ -0.62
SHKBP1-219ENST00000599575 RMI2Q96E14 147 aa11.16□□□□□ -0.62
SHKBP1-219ENST00000599575 TM2D2Q9BX73 214 aa11.16□□□□□ -0.62
SHKBP1-219ENST00000599575 TRAPPC1Q9Y5R8 145 aa11.16□□□□□ -0.62
SHKBP1-219ENST00000599575 RTL8CO15255 209 aa11.15□□□□□ -0.62
SHKBP1-219ENST00000599575 G0S2P27469 103 aa11.15□□□□□ -0.62
SHKBP1-219ENST00000599575 AMMECR1LQ6DCA0 310 aa11.15□□□□□ -0.62
SHKBP1-219ENST00000599575 CBLN2Q8IUK8 224 aa11.15□□□□□ -0.62
SHKBP1-219ENST00000599575 Q8N8P6 123 aa11.15□□□□□ -0.62
SHKBP1-219ENST00000599575 ALKBH7Q9BT30 221 aaPredicted RBP11.15□□□□□ -0.62
SHKBP1-219ENST00000599575 PRR34Q9NV39 138 aa11.15□□□□□ -0.62
SHKBP1-219ENST00000599575 KLK12Q9UKR0 248 aa11.15□□□□□ -0.62
SHKBP1-219ENST00000599575 CSDC2Q9Y534 153 aaKnown RBP11.15□□□□□ -0.62
SHKBP1-219ENST00000599575 CRPP02741 224 aa11.14□□□□□ -0.63
SHKBP1-219ENST00000599575 ANGP03950 147 aaKnown RBP11.14□□□□□ -0.63
SHKBP1-219ENST00000599575 Q8N976 141 aa11.14□□□□□ -0.63
SHKBP1-219ENST00000599575 TMEM101Q96IK0 257 aa11.14□□□□□ -0.63
SHKBP1-219ENST00000599575 FGF6P10767 208 aa11.13□□□□□ -0.63
SHKBP1-219ENST00000599575 S100A1P23297 94 aa11.13□□□□□ -0.63
SHKBP1-219ENST00000599575 MIAQ16674 131 aa11.13□□□□□ -0.63
SHKBP1-219ENST00000599575 KIAA1644Q3SXP7 199 aa11.13□□□□□ -0.63
SHKBP1-219ENST00000599575 ORMDL2Q53FV1 153 aa11.13□□□□□ -0.63
SHKBP1-219ENST00000599575 Q6ZRN7 208 aaPredicted RBP11.13□□□□□ -0.63
SHKBP1-219ENST00000599575 Q8N3U1 123 aa11.13□□□□□ -0.63
SHKBP1-219ENST00000599575 C20orf203Q8NBC4 194 aa11.13□□□□□ -0.63
SHKBP1-219ENST00000599575 TIMM21Q9BVV7 248 aa11.13□□□□□ -0.63
SHKBP1-219ENST00000599575 DNAH2Q9P225 4427 aa11.12□□□□□ -0.63
SHKBP1-219ENST00000599575 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.11□□□□□ -0.63
SHKBP1-219ENST00000599575 TRAV8-4A0A0B4J246 113 aa11.11□□□□□ -0.63
SHKBP1-219ENST00000599575 IGKV2-29A2NJV5 120 aaPredicted RBP11.11□□□□□ -0.63
SHKBP1-219ENST00000599575 RNASEKQ6P5S7 137 aaKnown RBP11.11□□□□□ -0.63
SHKBP1-219ENST00000599575 DEFB104AQ8WTQ1 72 aa11.11□□□□□ -0.63
SHKBP1-219ENST00000599575 UBE2WQ96B02 151 aa11.11□□□□□ -0.63
SHKBP1-219ENST00000599575 LOC389332A0A1B0GUA5 103 aa11.1□□□□□ -0.63
SHKBP1-219ENST00000599575 PRSS29PA6NIE9 313 aa11.1□□□□□ -0.63
SHKBP1-219ENST00000599575 LINC01549A6NIU2 74 aa11.1□□□□□ -0.63
SHKBP1-219ENST00000599575 DGAT2L7PQ6IED9 249 aa11.1□□□□□ -0.63
SHKBP1-219ENST00000599575 LINC00269Q8N2A0 174 aa11.1□□□□□ -0.63
SHKBP1-219ENST00000599575 OR5A1Q8NGJ0 315 aa11.1□□□□□ -0.63
SHKBP1-219ENST00000599575 PRSS3P2Q8NHM4 247 aa11.1□□□□□ -0.63
SHKBP1-219ENST00000599575 IGLV4-60A0A075B6I1 120 aa11.09□□□□□ -0.63
SHKBP1-219ENST00000599575 REG3AQ06141 175 aa11.09□□□□□ -0.63
SHKBP1-219ENST00000599575 ENHOQ6UWT2 76 aa11.09□□□□□ -0.63
SHKBP1-219ENST00000599575 C1orf43Q9BWL3 253 aa11.09□□□□□ -0.63
SHKBP1-219ENST00000599575 Q9HAA7 133 aa11.09□□□□□ -0.63
SHKBP1-219ENST00000599575 SPANXA1Q9NS26 97 aa11.09□□□□□ -0.63
SHKBP1-219ENST00000599575 LINC01546A6NGU7 62 aa11.08□□□□□ -0.64
SHKBP1-219ENST00000599575 PSCAO43653 123 aa11.08□□□□□ -0.64
SHKBP1-219ENST00000599575 IFI27P40305 119 aaPredicted RBP11.08□□□□□ -0.64
SHKBP1-219ENST00000599575 UBE2D4Q9Y2X8 147 aa11.08□□□□□ -0.64
SHKBP1-219ENST00000599575 COLCA2A8K830 154 aa11.07□□□□□ -0.64
SHKBP1-219ENST00000599575 CCL25O15444 150 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms