RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 TMEM218A2RU14 115 aa9.68□□□□□ -0.86
VRK3-206ENST00000594090 NCR2O95944 276 aa9.68□□□□□ -0.86
VRK3-206ENST00000594090 CRPP02741 224 aa9.68□□□□□ -0.86
VRK3-206ENST00000594090 MT-ND4LP03901 98 aa9.68□□□□□ -0.86
VRK3-206ENST00000594090 HBBP68871 147 aa9.68□□□□□ -0.86
VRK3-206ENST00000594090 ENHOQ6UWT2 76 aa9.68□□□□□ -0.86
VRK3-206ENST00000594090 COMMD7Q86VX2 200 aa9.68□□□□□ -0.86
VRK3-206ENST00000594090 ST20Q9HBF5 79 aa9.68□□□□□ -0.86
VRK3-206ENST00000594090 COX11Q9Y6N1 276 aa9.68□□□□□ -0.86
VRK3-206ENST00000594090 IGKV2D-24A0A075B6R9 120 aa9.67□□□□□ -0.86
VRK3-206ENST00000594090 SMKR1H3BMG3 65 aa9.67□□□□□ -0.86
VRK3-206ENST00000594090 UBE2L6O14933 153 aa9.67□□□□□ -0.86
VRK3-206ENST00000594090 S100A8P05109 93 aa9.67□□□□□ -0.86
VRK3-206ENST00000594090 FUSP35637 526 aaKnown RBP eCLIP9.67□□□□□ -0.86
VRK3-206ENST00000594090 MRPL51Q4U2R6 128 aaKnown RBP9.67□□□□□ -0.86
VRK3-206ENST00000594090 FAM104BQ5XKR9 115 aa9.67□□□□□ -0.86
VRK3-206ENST00000594090 TMEM70Q9BUB7 260 aa9.67□□□□□ -0.86
VRK3-206ENST00000594090 PGPEP1Q9NXJ5 209 aa9.67□□□□□ -0.86
VRK3-206ENST00000594090 F8W036 122 aa9.66□□□□□ -0.86
VRK3-206ENST00000594090 I3L3M4 83 aa9.66□□□□□ -0.86
VRK3-206ENST00000594090 APCSP02743 223 aa9.66□□□□□ -0.86
VRK3-206ENST00000594090 CDPF1Q6NVV7 123 aa9.66□□□□□ -0.86
VRK3-206ENST00000594090 ATP5L2Q7Z4Y8 100 aa9.66□□□□□ -0.86
VRK3-206ENST00000594090 MAPKAPK5-AS1Q8N8E1 139 aa9.66□□□□□ -0.86
VRK3-206ENST00000594090 NRACQ8N912 160 aa9.66□□□□□ -0.86
VRK3-206ENST00000594090 PRR34Q9NV39 138 aa9.66□□□□□ -0.86
VRK3-206ENST00000594090 A0A1B0GUV1 79 aa9.65□□□□□ -0.86
VRK3-206ENST00000594090 PMCHP20382 165 aa9.65□□□□□ -0.86
VRK3-206ENST00000594090 WFDC2Q14508 124 aa9.65□□□□□ -0.86
VRK3-206ENST00000594090 CLPSL2Q6UWE3 100 aa9.65□□□□□ -0.86
VRK3-206ENST00000594090 LINC00269Q8N2A0 174 aa9.65□□□□□ -0.86
VRK3-206ENST00000594090 C20orf203Q8NBC4 194 aa9.65□□□□□ -0.86
VRK3-206ENST00000594090 C1orf43Q9BWL3 253 aa9.65□□□□□ -0.86
VRK3-206ENST00000594090 IGLV4-60A0A075B6I1 120 aa9.65□□□□□ -0.87
VRK3-206ENST00000594090 LINC00862A6NCI5 91 aa9.65□□□□□ -0.87
VRK3-206ENST00000594090 PPP1R17O96001 155 aa9.65□□□□□ -0.87
VRK3-206ENST00000594090 TSHBP01222 138 aa9.65□□□□□ -0.87
VRK3-206ENST00000594090 POLR2KP53803 58 aaKnown RBP9.65□□□□□ -0.87
VRK3-206ENST00000594090 MIAQ16674 131 aa9.65□□□□□ -0.87
VRK3-206ENST00000594090 Q8N814 137 aa9.65□□□□□ -0.87
VRK3-206ENST00000594090 SEC11CQ9BY50 192 aa9.65□□□□□ -0.87
VRK3-206ENST00000594090 TMEM242Q9NWH2 141 aa9.65□□□□□ -0.87
VRK3-206ENST00000594090 TRBV27A0A0K0K1C4 114 aa9.64□□□□□ -0.87
VRK3-206ENST00000594090 LECT2O14960 151 aa9.64□□□□□ -0.87
VRK3-206ENST00000594090 LRP1BQ9NZR2 4599 aa9.64□□□□□ -0.87
VRK3-206ENST00000594090 DNAH5Q8TE73 4624 aa9.63□□□□□ -0.87
VRK3-206ENST00000594090 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.63□□□□□ -0.87
VRK3-206ENST00000594090 IGKV2-29A2NJV5 120 aaPredicted RBP9.63□□□□□ -0.87
VRK3-206ENST00000594090 SUMO2P61956 95 aaKnown RBP9.63□□□□□ -0.87
VRK3-206ENST00000594090 REG3AQ06141 175 aa9.63□□□□□ -0.87
VRK3-206ENST00000594090 BAALCQ8WXS3 180 aa9.63□□□□□ -0.87
VRK3-206ENST00000594090 H7C423 109 aa9.62□□□□□ -0.87
VRK3-206ENST00000594090 CKS2P33552 79 aa9.62□□□□□ -0.87
VRK3-206ENST00000594090 NTN5Q8WTR8 489 aaPredicted RBP9.62□□□□□ -0.87
VRK3-206ENST00000594090 D6R8Y8 96 aa9.61□□□□□ -0.87
VRK3-206ENST00000594090 VCYO14598 125 aa9.61□□□□□ -0.87
VRK3-206ENST00000594090 ESDP10768 282 aa9.61□□□□□ -0.87
VRK3-206ENST00000594090 TRBV24-1A0A075B6N3 115 aa9.6□□□□□ -0.87
VRK3-206ENST00000594090 IGLV5-52A0A0A0MRZ9 124 aa9.6□□□□□ -0.87
VRK3-206ENST00000594090 CDK2AP2O75956 126 aa9.6□□□□□ -0.87
VRK3-206ENST00000594090 TNFRSF6BO95407 300 aa9.6□□□□□ -0.87
VRK3-206ENST00000594090 HLA-DQA1P01909 254 aa9.6□□□□□ -0.87
VRK3-206ENST00000594090 FGF6P10767 208 aa9.6□□□□□ -0.87
VRK3-206ENST00000594090 AMMECR1LQ6DCA0 310 aa9.6□□□□□ -0.87
VRK3-206ENST00000594090 RNASEKQ6P5S7 137 aaKnown RBP9.6□□□□□ -0.87
VRK3-206ENST00000594090 BTF3L4Q96K17 158 aa9.6□□□□□ -0.87
VRK3-206ENST00000594090 IMMP2LQ96T52 175 aa9.6□□□□□ -0.87
VRK3-206ENST00000594090 C20orf78Q9BR46 151 aa9.6□□□□□ -0.87
VRK3-206ENST00000594090 CTDSP1Q9GZU7 261 aa9.6□□□□□ -0.87
VRK3-206ENST00000594090 PPBPP02775 128 aa9.59□□□□□ -0.87
VRK3-206ENST00000594090 ZNF25P17030 456 aaPredicted RBP9.59□□□□□ -0.87
VRK3-206ENST00000594090 FCER1GP30273 86 aa9.59□□□□□ -0.87
VRK3-206ENST00000594090 C10orf91Q5T1B1 145 aa9.59□□□□□ -0.87
VRK3-206ENST00000594090 KRTAP26-1Q6PEX3 210 aa9.59□□□□□ -0.87
VRK3-206ENST00000594090 IGLV10-54A0A075B6I4 117 aa9.58□□□□□ -0.88
VRK3-206ENST00000594090 TRAV8-4A0A0B4J246 113 aa9.58□□□□□ -0.88
VRK3-206ENST00000594090 C7orf77A4D0Y5 90 aa9.58□□□□□ -0.88
VRK3-206ENST00000594090 NPYP01303 97 aa9.58□□□□□ -0.88
VRK3-206ENST00000594090 RPL32P62910 135 aaKnown RBP9.58□□□□□ -0.88
VRK3-206ENST00000594090 ORMDL3Q8N138 153 aa9.58□□□□□ -0.88
VRK3-206ENST00000594090 KIR2DL4Q99706 377 aa9.58□□□□□ -0.88
VRK3-206ENST00000594090 CARHSP1Q9Y2V2 147 aaKnown RBP9.58□□□□□ -0.88
VRK3-206ENST00000594090 KIAA1109Q2LD37 5005 aa9.58□□□□□ -0.88
VRK3-206ENST00000594090 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.57□□□□□ -0.88
VRK3-206ENST00000594090 PHOX2AO14813 284 aa9.57□□□□□ -0.88
VRK3-206ENST00000594090 GCSHP23434 173 aa9.57□□□□□ -0.88
VRK3-206ENST00000594090 KRTAP10-1P60331 282 aa9.57□□□□□ -0.88
VRK3-206ENST00000594090 HERC2O95714 4834 aa9.57□□□□□ -0.88
VRK3-206ENST00000594090 TMEM136Q6ZRR5 245 aa9.56□□□□□ -0.88
VRK3-206ENST00000594090 SMIM2Q9BVW6 85 aa9.56□□□□□ -0.88
VRK3-206ENST00000594090 TRAV9-1A0A075B6T8 112 aa9.56□□□□□ -0.88
VRK3-206ENST00000594090 MRPL52Q86TS9 123 aaKnown RBP9.56□□□□□ -0.88
VRK3-206ENST00000594090 TMEM101Q96IK0 257 aa9.56□□□□□ -0.88
VRK3-206ENST00000594090 PRELID3AQ96N28 172 aa9.56□□□□□ -0.88
VRK3-206ENST00000594090 APOBP04114 4563 aaKnown RBP9.56□□□□□ -0.88
VRK3-206ENST00000594090 IGKV3OR2-268A0A0C4DH90 116 aa9.55□□□□□ -0.88
VRK3-206ENST00000594090 USP17L23D6RBM5 183 aa9.55□□□□□ -0.88
VRK3-206ENST00000594090 RHEBQ15382 184 aa9.55□□□□□ -0.88
VRK3-206ENST00000594090 C14orf177Q52M58 125 aa9.55□□□□□ -0.88
VRK3-206ENST00000594090 CLRN3Q8NCR9 226 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 85.1 ms