RNA–Protein interactions for RNA: ENST00000593706.3

PNKP-202, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 849 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-202ENST00000593706 CT83Q5H943 113 aa9.53□□□□□ -0.88
PNKP-202ENST00000593706 TEX261Q6UWH6 196 aa9.53□□□□□ -0.88
PNKP-202ENST00000593706 LINC01551Q86U37 167 aa9.53□□□□□ -0.88
PNKP-202ENST00000593706 DPH3P1Q9H4G8 78 aa9.53□□□□□ -0.88
PNKP-202ENST00000593706 SRP19P09132 144 aaKnown RBP9.52□□□□□ -0.89
PNKP-202ENST00000593706 TMEM97Q5BJF2 176 aa9.52□□□□□ -0.89
PNKP-202ENST00000593706 RASL11AQ6T310 242 aa9.52□□□□□ -0.89
PNKP-202ENST00000593706 CLPSL2Q6UWE3 100 aa9.52□□□□□ -0.89
PNKP-202ENST00000593706 SMIM7Q9BQ49 75 aa9.52□□□□□ -0.89
PNKP-202ENST00000593706 PRSS1P07477 247 aa9.51□□□□□ -0.89
PNKP-202ENST00000593706 FOXA3P55318 350 aaPredicted RBP9.51□□□□□ -0.89
PNKP-202ENST00000593706 TWIST1Q15672 202 aa9.51□□□□□ -0.89
PNKP-202ENST00000593706 EIF5A2Q9GZV4 153 aaKnown RBP9.51□□□□□ -0.89
PNKP-202ENST00000593706 PRR34Q9NV39 138 aa9.51□□□□□ -0.89
PNKP-202ENST00000593706 HNRNPA3P51991 378 aaKnown RBP9.5□□□□□ -0.89
PNKP-202ENST00000593706 CEBPGP53567 150 aa9.5□□□□□ -0.89
PNKP-202ENST00000593706 RBX1P62877 108 aa9.5□□□□□ -0.89
PNKP-202ENST00000593706 DGAT2L7PQ6IED9 249 aa9.5□□□□□ -0.89
PNKP-202ENST00000593706 PGLYRP4Q96LB8 373 aa9.5□□□□□ -0.89
PNKP-202ENST00000593706 NIT2Q9NQR4 276 aa9.5□□□□□ -0.89
PNKP-202ENST00000593706 TRBV25-1A0A075B6N4 114 aa9.49□□□□□ -0.89
PNKP-202ENST00000593706 A8MWL6 223 aa9.49□□□□□ -0.89
PNKP-202ENST00000593706 C9JQL5 133 aa9.49□□□□□ -0.89
PNKP-202ENST00000593706 GATCO43716 136 aaKnown RBP9.49□□□□□ -0.89
PNKP-202ENST00000593706 GATD1Q8NB37 220 aa9.49□□□□□ -0.89
PNKP-202ENST00000593706 TRAV26-2A0A0B4J265 109 aa9.48□□□□□ -0.89
PNKP-202ENST00000593706 IGHV1-24A0A0C4DH33 117 aa9.48□□□□□ -0.89
PNKP-202ENST00000593706 SRSF3P84103 164 aaKnown RBP9.48□□□□□ -0.89
PNKP-202ENST00000593706 GAGE6Q13070 117 aa9.48□□□□□ -0.89
PNKP-202ENST00000593706 KRTAP26-1Q6PEX3 210 aa9.48□□□□□ -0.89
PNKP-202ENST00000593706 LINC00269Q8N2A0 174 aa9.48□□□□□ -0.89
PNKP-202ENST00000593706 C9orf163Q8N9P6 203 aa9.48□□□□□ -0.89
PNKP-202ENST00000593706 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.48□□□□□ -0.89
PNKP-202ENST00000593706 ZNF727A8MUV8 499 aa9.47□□□□□ -0.89
PNKP-202ENST00000593706 TSKUQ8WUA8 353 aa9.47□□□□□ -0.89
PNKP-202ENST00000593706 GFRA4Q9GZZ7 299 aa9.47□□□□□ -0.89
PNKP-202ENST00000593706 OSTCQ9NRP0 149 aa9.47□□□□□ -0.89
PNKP-202ENST00000593706 FAM231BA6NCW3 169 aa9.46□□□□□ -0.9
PNKP-202ENST00000593706 V9GYV3 84 aa9.46□□□□□ -0.9
PNKP-202ENST00000593706 IGLV10-54A0A075B6I4 117 aa9.45□□□□□ -0.9
PNKP-202ENST00000593706 HIGD1CA8MV81 97 aa9.45□□□□□ -0.9
PNKP-202ENST00000593706 PANO1I0J062 215 aa9.45□□□□□ -0.9
PNKP-202ENST00000593706 C20orf203Q8NBC4 194 aa9.45□□□□□ -0.9
PNKP-202ENST00000593706 ISOC2Q96AB3 205 aa9.45□□□□□ -0.9
PNKP-202ENST00000593706 RPL39LQ96EH5 51 aaKnown RBP9.45□□□□□ -0.9
PNKP-202ENST00000593706 TMEM243Q9BU79 118 aa9.45□□□□□ -0.9
PNKP-202ENST00000593706 IGLV4-60A0A075B6I1 120 aa9.44□□□□□ -0.9
PNKP-202ENST00000593706 A0A1B0GUV1 79 aa9.44□□□□□ -0.9
PNKP-202ENST00000593706 hDV102S1A0JD36 115 aa9.44□□□□□ -0.9
PNKP-202ENST00000593706 REG3AQ06141 175 aa9.44□□□□□ -0.9
PNKP-202ENST00000593706 FAM74A3Q4VXF1 159 aa9.44□□□□□ -0.9
PNKP-202ENST00000593706 CLRN3Q8NCR9 226 aa9.44□□□□□ -0.9
PNKP-202ENST00000593706 A0A1B0GUT8 65 aa9.43□□□□□ -0.9
PNKP-202ENST00000593706 GAS8-AS1O95177 125 aa9.43□□□□□ -0.9
PNKP-202ENST00000593706 RPL23P62829 140 aaKnown RBP9.43□□□□□ -0.9
PNKP-202ENST00000593706 COTL1Q14019 142 aa9.43□□□□□ -0.9
PNKP-202ENST00000593706 TRBV6-5A0A0K0K1A5 114 aa9.42□□□□□ -0.9
PNKP-202ENST00000593706 TMEM241Q24JQ0 296 aa9.42□□□□□ -0.9
PNKP-202ENST00000593706 SDIM1Q6ZPB5 146 aa9.42□□□□□ -0.9
PNKP-202ENST00000593706 SMIM15Q7Z3B0 74 aa9.42□□□□□ -0.9
PNKP-202ENST00000593706 DPH3Q96FX2 82 aa9.42□□□□□ -0.9
PNKP-202ENST00000593706 RNF185Q96GF1 192 aa9.42□□□□□ -0.9
PNKP-202ENST00000593706 TMEM191AQ9H0A3 160 aa9.42□□□□□ -0.9
PNKP-202ENST00000593706 SMDT1Q9H4I9 107 aa9.42□□□□□ -0.9
PNKP-202ENST00000593706 AP5S1Q9NUS5 200 aa9.42□□□□□ -0.9
PNKP-202ENST00000593706 IGHV3-64A0A075B6Q5 118 aa9.41□□□□□ -0.9
PNKP-202ENST00000593706 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.41□□□□□ -0.9
PNKP-202ENST00000593706 AMTP48728 403 aa9.41□□□□□ -0.9
PNKP-202ENST00000593706 CNBPP62633 177 aaKnown RBP9.41□□□□□ -0.9
PNKP-202ENST00000593706 Q6ZRU5 148 aa9.41□□□□□ -0.9
PNKP-202ENST00000593706 NUP35Q8NFH5 326 aa9.41□□□□□ -0.9
PNKP-202ENST00000593706 SDHAF1A6NFY7 115 aa9.4□□□□□ -0.9
PNKP-202ENST00000593706 NCR2O95944 276 aa9.4□□□□□ -0.9
PNKP-202ENST00000593706 MT1HL1P0DM35 61 aa9.4□□□□□ -0.9
PNKP-202ENST00000593706 RPS10P46783 165 aaKnown RBP9.4□□□□□ -0.9
PNKP-202ENST00000593706 NAT8Q9UHE5 227 aa9.4□□□□□ -0.9
PNKP-202ENST00000593706 TNXBP22105 4242 aa9.4□□□□□ -0.91
PNKP-202ENST00000593706 TRAV8-4A0A0B4J246 113 aa9.39□□□□□ -0.91
PNKP-202ENST00000593706 SMIM27A0A1W2PRY6 76 aa9.39□□□□□ -0.91
PNKP-202ENST00000593706 RAB4AP20338 218 aa9.39□□□□□ -0.91
PNKP-202ENST00000593706 CIRBPQ14011 172 aaKnown RBP9.39□□□□□ -0.91
PNKP-202ENST00000593706 PEA15Q15121 130 aa9.39□□□□□ -0.91
PNKP-202ENST00000593706 ADIRFQ15847 76 aa9.39□□□□□ -0.91
PNKP-202ENST00000593706 BORCS7Q96B45 105 aa9.39□□□□□ -0.91
PNKP-202ENST00000593706 LRP2P98164 4655 aa9.38□□□□□ -0.91
PNKP-202ENST00000593706 UBE2L6O14933 153 aa9.38□□□□□ -0.91
PNKP-202ENST00000593706 CHTF8P0CG12 524 aa9.38□□□□□ -0.91
PNKP-202ENST00000593706 IFITM2Q01629 132 aa9.38□□□□□ -0.91
PNKP-202ENST00000593706 AMN1Q8IY45 258 aa9.38□□□□□ -0.91
PNKP-202ENST00000593706 A0A087WYN8 130 aa9.37□□□□□ -0.91
PNKP-202ENST00000593706 TSHBP01222 138 aa9.37□□□□□ -0.91
PNKP-202ENST00000593706 MRAP2Q96G30 205 aa9.37□□□□□ -0.91
PNKP-202ENST00000593706 NAT8BQ9UHF3 227 aa9.37□□□□□ -0.91
PNKP-202ENST00000593706 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.36□□□□□ -0.91
PNKP-202ENST00000593706 TRBV27A0A0K0K1C4 114 aa9.36□□□□□ -0.91
PNKP-202ENST00000593706 IGKV2-29A2NJV5 120 aaPredicted RBP9.36□□□□□ -0.91
PNKP-202ENST00000593706 H7C423 109 aa9.36□□□□□ -0.91
PNKP-202ENST00000593706 I3L3M4 83 aa9.36□□□□□ -0.91
PNKP-202ENST00000593706 APCSP02743 223 aa9.36□□□□□ -0.91
PNKP-202ENST00000593706 ESDP10768 282 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms