RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 FAM19A5Q7Z5A7 132 aaPredicted RBP10.89□□□□□ -0.67
SMARCA4-219ENST00000592604 CCL19Q99731 98 aa10.89□□□□□ -0.67
SMARCA4-219ENST00000592604 TTC32Q5I0X7 151 aa10.89□□□□□ -0.67
SMARCA4-219ENST00000592604 C10orf99Q6UWK7 81 aa10.89□□□□□ -0.67
SMARCA4-219ENST00000592604 CD28P10747 220 aa10.88□□□□□ -0.67
SMARCA4-219ENST00000592604 VPS13CQ709C8 3753 aa10.88□□□□□ -0.67
SMARCA4-219ENST00000592604 IGHV1-58A0A0C4DH39 117 aa10.88□□□□□ -0.67
SMARCA4-219ENST00000592604 Q1RN00 199 aa10.88□□□□□ -0.67
SMARCA4-219ENST00000592604 SPANXDQ9BXN6 97 aa10.88□□□□□ -0.67
SMARCA4-219ENST00000592604 SPANXCQ9NY87 97 aa10.88□□□□□ -0.67
SMARCA4-219ENST00000592604 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.88□□□□□ -0.671e-6■■■■□ 21.1
SMARCA4-219ENST00000592604 SORL1Q92673 2214 aa10.87□□□□□ -0.67
SMARCA4-219ENST00000592604 TMEM126AQ9H061 195 aa10.87□□□□□ -0.67
SMARCA4-219ENST00000592604 TRBV10-2A0A0K0K1G8 114 aa10.87□□□□□ -0.67
SMARCA4-219ENST00000592604 TRIAP1O43715 76 aa10.87□□□□□ -0.67
SMARCA4-219ENST00000592604 RBMY1A1P0DJD3 496 aaKnown RBP10.87□□□□□ -0.67
SMARCA4-219ENST00000592604 RBMY1CP0DJD4 496 aa10.87□□□□□ -0.67
SMARCA4-219ENST00000592604 IFITM1P13164 125 aa10.87□□□□□ -0.67
SMARCA4-219ENST00000592604 RPL13AP40429 203 aaKnown RBP10.87□□□□□ -0.67
SMARCA4-219ENST00000592604 RBMY1FQ15415 496 aaKnown RBP10.87□□□□□ -0.67
SMARCA4-219ENST00000592604 NTN5Q8WTR8 489 aaPredicted RBP10.87□□□□□ -0.67
SMARCA4-219ENST00000592604 TRAV8-3A0A0A6YYJ7 113 aa10.86□□□□□ -0.67
SMARCA4-219ENST00000592604 SYNJ2BPP57105 145 aa10.86□□□□□ -0.67
SMARCA4-219ENST00000592604 ADARB2-AS1A8MUL3 147 aa10.86□□□□□ -0.67
SMARCA4-219ENST00000592604 GNLYP22749 145 aa10.86□□□□□ -0.67
SMARCA4-219ENST00000592604 GAGE2BQ13066 116 aa10.86□□□□□ -0.67
SMARCA4-219ENST00000592604 GAGE2EQ4V326 116 aa10.86□□□□□ -0.67
SMARCA4-219ENST00000592604 GAGE2DQ9UEU5 116 aa10.86□□□□□ -0.67
SMARCA4-219ENST00000592604 TINCRA0A1B0GVN0 87 aa10.85□□□□□ -0.67
SMARCA4-219ENST00000592604 ADAMTSL4-AS1Q5T5F5 129 aa10.85□□□□□ -0.67
SMARCA4-219ENST00000592604 B4DSR2 109 aa10.85□□□□□ -0.67
SMARCA4-219ENST00000592604 IGHV4-59P01825 116 aa10.85□□□□□ -0.67
SMARCA4-219ENST00000592604 VSIG2Q96IQ7 327 aa10.85□□□□□ -0.67
SMARCA4-219ENST00000592604 NDUFA12Q9UI09 145 aa10.85□□□□□ -0.67
SMARCA4-219ENST00000592604 PROK1P58294 105 aa10.85□□□□□ -0.67
SMARCA4-219ENST00000592604 PIK3CD-AS1Q5SR53 167 aa10.85□□□□□ -0.67
SMARCA4-219ENST00000592604 CEMP1Q6PRD7 247 aaPredicted RBP10.85□□□□□ -0.67
SMARCA4-219ENST00000592604 PRSS2P07478 247 aa10.84□□□□□ -0.67
SMARCA4-219ENST00000592604 SPANXA1Q9NS26 97 aa10.84□□□□□ -0.67
SMARCA4-219ENST00000592604 NACAE9PAV3 2078 aa10.84□□□□□ -0.67
SMARCA4-219ENST00000592604 IGHV3-73A0A0B4J1V6 119 aa10.84□□□□□ -0.67
SMARCA4-219ENST00000592604 A8MTW9 85 aa10.84□□□□□ -0.67
SMARCA4-219ENST00000592604 MIAQ16674 131 aa10.84□□□□□ -0.67
SMARCA4-219ENST00000592604 CHCHD7Q9BUK0 85 aa10.84□□□□□ -0.67
SMARCA4-219ENST00000592604 ICOSQ9Y6W8 199 aa10.84□□□□□ -0.67
SMARCA4-219ENST00000592604 DEFB112Q30KQ8 113 aa10.83□□□□□ -0.68
SMARCA4-219ENST00000592604 BEX4Q9NWD9 120 aaPredicted RBP10.83□□□□□ -0.68
SMARCA4-219ENST00000592604 CSPG4Q6UVK1 2322 aa10.83□□□□□ -0.68
SMARCA4-219ENST00000592604 UBE2D4Q9Y2X8 147 aa10.83□□□□□ -0.68
SMARCA4-219ENST00000592604 TEX49A0A1B0GTD5 131 aa10.81□□□□□ -0.68
SMARCA4-219ENST00000592604 HOXD3P31249 432 aaPredicted RBP10.81□□□□□ -0.68
SMARCA4-219ENST00000592604 KIR2DL5BQ8NHK3 375 aa10.81□□□□□ -0.68
SMARCA4-219ENST00000592604 TIMM17BO60830 172 aa10.81□□□□□ -0.68
SMARCA4-219ENST00000592604 RNASE13Q5GAN3 156 aaKnown RBP10.81□□□□□ -0.68
SMARCA4-219ENST00000592604 COL12A1Q99715 3063 aa10.81□□□□□ -0.68
SMARCA4-219ENST00000592604 SEC61GP60059 68 aa10.81□□□□□ -0.68
SMARCA4-219ENST00000592604 Q9UF83 564 aa10.81□□□□□ -0.68
SMARCA4-219ENST00000592604 KNCNA6PVL3 124 aa10.8□□□□□ -0.68
SMARCA4-219ENST00000592604 H3BMM0 161 aa10.8□□□□□ -0.68
SMARCA4-219ENST00000592604 H3BT86 120 aa10.8□□□□□ -0.68
SMARCA4-219ENST00000592604 H7C423 109 aa10.8□□□□□ -0.68
SMARCA4-219ENST00000592604 SNCGO76070 127 aa10.8□□□□□ -0.68
SMARCA4-219ENST00000592604 COX6CP09669 75 aa10.8□□□□□ -0.68
SMARCA4-219ENST00000592604 Q6ZSN1 163 aa10.8□□□□□ -0.68
SMARCA4-219ENST00000592604 OR13C6PQ8NH95 151 aa10.8□□□□□ -0.68
SMARCA4-219ENST00000592604 UBE2WQ96B02 151 aa10.8□□□□□ -0.68
SMARCA4-219ENST00000592604 UBE2E2Q96LR5 201 aa10.8□□□□□ -0.68
SMARCA4-219ENST00000592604 HTN1P15515 57 aa10.8□□□□□ -0.68
SMARCA4-219ENST00000592604 Q6Q795 121 aa10.8□□□□□ -0.68
SMARCA4-219ENST00000592604 PRORYQ9H606 182 aa10.8□□□□□ -0.68
SMARCA4-219ENST00000592604 TRAV8-4A0A0B4J246 113 aa10.79□□□□□ -0.68
SMARCA4-219ENST00000592604 C2orf82Q6UX34 121 aa10.79□□□□□ -0.68
SMARCA4-219ENST00000592604 TMEM61Q8N0U2 210 aa10.79□□□□□ -0.68
SMARCA4-219ENST00000592604 TMEM101Q96IK0 257 aa10.79□□□□□ -0.68
SMARCA4-219ENST00000592604 TRAV4A0A0B4J268 109 aa10.79□□□□□ -0.68
SMARCA4-219ENST00000592604 A8MZ25 164 aa10.79□□□□□ -0.68
SMARCA4-219ENST00000592604 CRLF1O75462 422 aa10.78□□□□□ -0.68
SMARCA4-219ENST00000592604 DUX3Q96PT4 197 aa10.78□□□□□ -0.68
SMARCA4-219ENST00000592604 RBMY1BA6NDE4 496 aaKnown RBP10.78□□□□□ -0.68
SMARCA4-219ENST00000592604 RBMY1EA6NEQ0 496 aaKnown RBP10.78□□□□□ -0.68
SMARCA4-219ENST00000592604 RBMY1DP0C7P1 496 aaKnown RBP10.78□□□□□ -0.68
SMARCA4-219ENST00000592604 DEFB131AP59861 70 aa10.78□□□□□ -0.68
SMARCA4-219ENST00000592604 ZNF415Q09FC8 603 aa10.78□□□□□ -0.68
SMARCA4-219ENST00000592604 LST1O00453 97 aa10.78□□□□□ -0.68
SMARCA4-219ENST00000592604 TIRAPP58753 221 aa10.78□□□□□ -0.68
SMARCA4-219ENST00000592604 LINC00467Q9BRT7 94 aa10.78□□□□□ -0.68
SMARCA4-219ENST00000592604 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.77□□□□□ -0.69
SMARCA4-219ENST00000592604 IGLV5-45A0A087WSX0 123 aa10.77□□□□□ -0.69
SMARCA4-219ENST00000592604 IGKV2-29A2NJV5 120 aaPredicted RBP10.77□□□□□ -0.69
SMARCA4-219ENST00000592604 LINC01587Q99440 93 aa10.77□□□□□ -0.69
SMARCA4-219ENST00000592604 SPG11Q96JI7 2443 aa10.77□□□□□ -0.69
SMARCA4-219ENST00000592604 J3KT08 172 aa10.77□□□□□ -0.69
SMARCA4-219ENST00000592604 IGHV3-53P01767 116 aa10.77□□□□□ -0.69
SMARCA4-219ENST00000592604 PRM2P04554 102 aa10.77□□□□□ -0.69
SMARCA4-219ENST00000592604 Q6ZSV7 163 aa10.77□□□□□ -0.69
SMARCA4-219ENST00000592604 MRAPQ8TCY5 172 aa10.77□□□□□ -0.69
SMARCA4-219ENST00000592604 DEFB121Q5J5C9 76 aa10.76□□□□□ -0.69
SMARCA4-219ENST00000592604 NDUFA1O15239 70 aa10.76□□□□□ -0.69
SMARCA4-219ENST00000592604 DSCR9P59020 149 aa10.76□□□□□ -0.69
SMARCA4-219ENST00000592604 J3QLI3 93 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms