RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 RHODO00212 210 aa8.01□□□□□ -1.13
VPS4B-206ENST00000591475 IGKV3-20P01619 116 aa8.01□□□□□ -1.13
VPS4B-206ENST00000591475 P0DMU3 169 aa8.01□□□□□ -1.13
VPS4B-206ENST00000591475 FAM231AP0DMU4 169 aa8.01□□□□□ -1.13
VPS4B-206ENST00000591475 FAM231CP0DMU5 169 aa8.01□□□□□ -1.13
VPS4B-206ENST00000591475 SNRPD3P62318 126 aaKnown RBP8.01□□□□□ -1.13
VPS4B-206ENST00000591475 FHL3Q13643 280 aa8.01□□□□□ -1.13
VPS4B-206ENST00000591475 ANKRD29Q8N6D5 301 aa8.01□□□□□ -1.13
VPS4B-206ENST00000591475 TRAV2A0A0B4J234 112 aa8□□□□□ -1.13
VPS4B-206ENST00000591475 IGHV3-33P01772 117 aa8□□□□□ -1.13
VPS4B-206ENST00000591475 MT-ATP8P03928 68 aa8□□□□□ -1.13
VPS4B-206ENST00000591475 ZNF22P17026 224 aaPredicted RBP8□□□□□ -1.13
VPS4B-206ENST00000591475 TMEM263Q8WUH6 116 aaKnown RBP8□□□□□ -1.13
VPS4B-206ENST00000591475 ZNF580Q9UK33 172 aa8□□□□□ -1.13
VPS4B-206ENST00000591475 ERG28Q9UKR5 140 aa8□□□□□ -1.13
VPS4B-206ENST00000591475 SETXQ7Z333 2677 aaKnown RBP8□□□□□ -1.13
VPS4B-206ENST00000591475 TRAV16A0A0A6YYK6 109 aaPredicted RBP8□□□□□ -1.13
VPS4B-206ENST00000591475 M0QXV9 152 aa8□□□□□ -1.13
VPS4B-206ENST00000591475 XGP55808 180 aa8□□□□□ -1.13
VPS4B-206ENST00000591475 Q6YL49 198 aa8□□□□□ -1.13
VPS4B-206ENST00000591475 RAX2Q96IS3 184 aa8□□□□□ -1.13
VPS4B-206ENST00000591475 IGLV4-3A0A075B6K6 122 aa7.99□□□□□ -1.13
VPS4B-206ENST00000591475 A0A0J9YXV3 536 aa7.99□□□□□ -1.13
VPS4B-206ENST00000591475 TMEM262E9PQX1 116 aa7.99□□□□□ -1.13
VPS4B-206ENST00000591475 K7EQG2 157 aa7.99□□□□□ -1.13
VPS4B-206ENST00000591475 SLC25A20O43772 301 aa7.99□□□□□ -1.13
VPS4B-206ENST00000591475 MUSTN1Q8IVN3 82 aa7.99□□□□□ -1.13
VPS4B-206ENST00000591475 GEMIN7Q9H840 131 aaKnown RBP7.99□□□□□ -1.13
VPS4B-206ENST00000591475 IGHV3-64A0A075B6Q5 118 aa7.98□□□□□ -1.13
VPS4B-206ENST00000591475 C9JAW5 83 aa7.98□□□□□ -1.13
VPS4B-206ENST00000591475 IGHV4-59P01825 116 aa7.98□□□□□ -1.13
VPS4B-206ENST00000591475 PSMB8P28062 276 aa7.98□□□□□ -1.13
VPS4B-206ENST00000591475 SPINK13Q1W4C9 94 aa7.98□□□□□ -1.13
VPS4B-206ENST00000591475 SONP18583 2426 aaKnown RBP7.98□□□□□ -1.13
VPS4B-206ENST00000591475 TRGV11A0A075B6L2 103 aa7.98□□□□□ -1.13
VPS4B-206ENST00000591475 H7C2G1 150 aa7.98□□□□□ -1.13
VPS4B-206ENST00000591475 M0R2P5 195 aa7.98□□□□□ -1.13
VPS4B-206ENST00000591475 EIF4EBP3O60516 100 aaPredicted RBP7.98□□□□□ -1.13
VPS4B-206ENST00000591475 TMEM95Q3KNT9 176 aa7.98□□□□□ -1.13
VPS4B-206ENST00000591475 SMR3AQ99954 134 aa7.98□□□□□ -1.13
VPS4B-206ENST00000591475 LY6G6DO95868 133 aa7.97□□□□□ -1.13
VPS4B-206ENST00000591475 Q1RN00 199 aa7.97□□□□□ -1.13
VPS4B-206ENST00000591475 VPREB3Q9UKI3 123 aa7.97□□□□□ -1.13
VPS4B-206ENST00000591475 A0A0J9YXY3 114 aa7.96□□□□□ -1.13
VPS4B-206ENST00000591475 TMEM89A2RUT3 159 aa7.96□□□□□ -1.13
VPS4B-206ENST00000591475 ATXN8Q156A1 80 aa7.96□□□□□ -1.13
VPS4B-206ENST00000591475 TIMM21Q9BVV7 248 aa7.96□□□□□ -1.13
VPS4B-206ENST00000591475 PYGO1Q9Y3Y4 419 aa7.96□□□□□ -1.13
VPS4B-206ENST00000591475 CD28P10747 220 aa7.96□□□□□ -1.14
VPS4B-206ENST00000591475 EDA2RQ9HAV5 297 aa7.96□□□□□ -1.14
VPS4B-206ENST00000591475 HIVEP2P31629 2446 aa7.96□□□□□ -1.14
VPS4B-206ENST00000591475 HIVEP1P15822 2718 aa7.96□□□□□ -1.14
VPS4B-206ENST00000591475 IGHV3-30-3P0DP02 117 aa7.95□□□□□ -1.14
VPS4B-206ENST00000591475 TMEM86BQ8N661 226 aa7.95□□□□□ -1.14
VPS4B-206ENST00000591475 RNF152Q8N8N0 203 aa7.95□□□□□ -1.14
VPS4B-206ENST00000591475 SPXQ9BT56 116 aa7.95□□□□□ -1.14
VPS4B-206ENST00000591475 TRAV26-1A0A087WT03 109 aa7.94□□□□□ -1.14
VPS4B-206ENST00000591475 MRPS36P82909 103 aaKnown RBP7.94□□□□□ -1.14
VPS4B-206ENST00000591475 LINC01620Q4KN68 170 aa7.94□□□□□ -1.14
VPS4B-206ENST00000591475 TRBV30A0A0K0K1B3 111 aa7.93□□□□□ -1.14
VPS4B-206ENST00000591475 SYNJ2BPP57105 145 aa7.93□□□□□ -1.14
VPS4B-206ENST00000591475 C10orf99Q6UWK7 81 aa7.93□□□□□ -1.14
VPS4B-206ENST00000591475 MTORP42345 2549 aa7.93□□□□□ -1.14
VPS4B-206ENST00000591475 ANK3Q12955 4377 aaKnown RBP7.93□□□□□ -1.14
VPS4B-206ENST00000591475 ZFAND6Q6FIF0 208 aa7.93□□□□□ -1.14
VPS4B-206ENST00000591475 LINC01600Q96MT4 127 aa7.93□□□□□ -1.14
VPS4B-206ENST00000591475 LITAFQ99732 161 aa7.93□□□□□ -1.14
VPS4B-206ENST00000591475 SPANXDQ9BXN6 97 aa7.93□□□□□ -1.14
VPS4B-206ENST00000591475 SPANXCQ9NY87 97 aa7.93□□□□□ -1.14
VPS4B-206ENST00000591475 TNFRSF18Q9Y5U5 241 aa7.93□□□□□ -1.14
VPS4B-206ENST00000591475 IGHV3-73A0A0B4J1V6 119 aa7.92□□□□□ -1.14
VPS4B-206ENST00000591475 IGHV1-58A0A0C4DH39 117 aa7.92□□□□□ -1.14
VPS4B-206ENST00000591475 ADARB2-AS1A8MUL3 147 aa7.92□□□□□ -1.14
VPS4B-206ENST00000591475 NTN5Q8WTR8 489 aaPredicted RBP7.92□□□□□ -1.14
VPS4B-206ENST00000591475 FAM104AQ969W3 186 aa7.92□□□□□ -1.14
VPS4B-206ENST00000591475 TRAV8-3A0A0A6YYJ7 113 aa7.91□□□□□ -1.14
VPS4B-206ENST00000591475 TRIAP1O43715 76 aa7.91□□□□□ -1.14
VPS4B-206ENST00000591475 PRSS2P07478 247 aa7.91□□□□□ -1.14
VPS4B-206ENST00000591475 ELANEP08246 267 aa7.91□□□□□ -1.14
VPS4B-206ENST00000591475 NDUFA12Q9UI09 145 aa7.91□□□□□ -1.14
VPS4B-206ENST00000591475 TRBV10-2A0A0K0K1G8 114 aa7.91□□□□□ -1.14
VPS4B-206ENST00000591475 TINCRA0A1B0GVN0 87 aa7.91□□□□□ -1.14
VPS4B-206ENST00000591475 DNAJC9-AS1A6NH13 148 aa7.91□□□□□ -1.14
VPS4B-206ENST00000591475 RBMY1A1P0DJD3 496 aaKnown RBP7.91□□□□□ -1.14
VPS4B-206ENST00000591475 RBMY1CP0DJD4 496 aa7.91□□□□□ -1.14
VPS4B-206ENST00000591475 RPL13AP40429 203 aaKnown RBP7.91□□□□□ -1.14
VPS4B-206ENST00000591475 RBMY1FQ15415 496 aaKnown RBP7.91□□□□□ -1.14
VPS4B-206ENST00000591475 DUX5Q96PT3 197 aa7.91□□□□□ -1.14
VPS4B-206ENST00000591475 CITED1Q99966 193 aa7.91□□□□□ -1.14
VPS4B-206ENST00000591475 SPANXA1Q9NS26 97 aa7.91□□□□□ -1.14
VPS4B-206ENST00000591475 NSD1Q96L73 2696 aaPredicted RBP7.9□□□□□ -1.14
VPS4B-206ENST00000591475 CYSRT1A8MQ03 144 aa7.9□□□□□ -1.14
VPS4B-206ENST00000591475 HTN1P15515 57 aa7.9□□□□□ -1.14
VPS4B-206ENST00000591475 PROK1P58294 105 aa7.9□□□□□ -1.14
VPS4B-206ENST00000591475 MIAQ16674 131 aa7.9□□□□□ -1.14
VPS4B-206ENST00000591475 CEMP1Q6PRD7 247 aaPredicted RBP7.9□□□□□ -1.14
VPS4B-206ENST00000591475 VSIG2Q96IQ7 327 aa7.9□□□□□ -1.14
VPS4B-206ENST00000591475 CLUHP3Q96NS8 147 aa7.9□□□□□ -1.14
VPS4B-206ENST00000591475 ANAPC13Q9BS18 74 aa7.9□□□□□ -1.14
VPS4B-206ENST00000591475 ICOSQ9Y6W8 199 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms