RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 SDIM1Q6ZPB5 146 aa7.04□□□□□ -1.28
VPS4B-202ENST00000588059 DPH3P1Q9H4G8 78 aa7.04□□□□□ -1.28
VPS4B-202ENST00000588059 TRBV6-8A0A0A6YYG3 113 aa7.03□□□□□ -1.28
VPS4B-202ENST00000588059 ZNF727A8MUV8 499 aa7.03□□□□□ -1.28
VPS4B-202ENST00000588059 M0QY20 66 aa7.03□□□□□ -1.28
VPS4B-202ENST00000588059 SRP19P09132 144 aaKnown RBP7.03□□□□□ -1.28
VPS4B-202ENST00000588059 CTRLP40313 264 aa7.03□□□□□ -1.28
VPS4B-202ENST00000588059 CIRBPQ14011 172 aaKnown RBP7.03□□□□□ -1.28
VPS4B-202ENST00000588059 WDR73Q6P4I2 378 aa7.03□□□□□ -1.28
VPS4B-202ENST00000588059 CHCHD5Q9BSY4 110 aa7.03□□□□□ -1.28
VPS4B-202ENST00000588059 A8MWL6 223 aa7.02□□□□□ -1.29
VPS4B-202ENST00000588059 CRPP02741 224 aa7.02□□□□□ -1.29
VPS4B-202ENST00000588059 TMEM97Q5BJF2 176 aa7.02□□□□□ -1.29
VPS4B-202ENST00000588059 TEX261Q6UWH6 196 aa7.02□□□□□ -1.29
VPS4B-202ENST00000588059 FAM231DQ6ZW35 169 aa7.02□□□□□ -1.29
VPS4B-202ENST00000588059 C15orf54Q8N8G6 183 aa7.02□□□□□ -1.29
VPS4B-202ENST00000588059 GTSF1Q8WW33 167 aa7.02□□□□□ -1.29
VPS4B-202ENST00000588059 PGLYRP4Q96LB8 373 aa7.02□□□□□ -1.29
VPS4B-202ENST00000588059 GAS8-AS1O95177 125 aa7.01□□□□□ -1.29
VPS4B-202ENST00000588059 MPV17L2Q567V2 206 aa7.01□□□□□ -1.29
VPS4B-202ENST00000588059 RASL11AQ6T310 242 aa7.01□□□□□ -1.29
VPS4B-202ENST00000588059 SMIM15Q7Z3B0 74 aa7.01□□□□□ -1.29
VPS4B-202ENST00000588059 LINC01551Q86U37 167 aa7.01□□□□□ -1.29
VPS4B-202ENST00000588059 BORCS7Q96B45 105 aa7.01□□□□□ -1.29
VPS4B-202ENST00000588059 LINC01600Q96MT4 127 aa7.01□□□□□ -1.29
VPS4B-202ENST00000588059 TRBV25-1A0A075B6N4 114 aa7□□□□□ -1.29
VPS4B-202ENST00000588059 NDUFS6O75380 124 aaKnown RBP7□□□□□ -1.29
VPS4B-202ENST00000588059 ANGP03950 147 aaKnown RBP7□□□□□ -1.29
VPS4B-202ENST00000588059 PKIAP61925 76 aa7□□□□□ -1.29
VPS4B-202ENST00000588059 KRTAP26-1Q6PEX3 210 aa7□□□□□ -1.29
VPS4B-202ENST00000588059 NTM-AS1Q6ZSK4 140 aa7□□□□□ -1.29
VPS4B-202ENST00000588059 CNFNQ9BYD5 112 aa7□□□□□ -1.29
VPS4B-202ENST00000588059 NIT2Q9NQR4 276 aa7□□□□□ -1.29
VPS4B-202ENST00000588059 A0A087WYN8 130 aa6.99□□□□□ -1.29
VPS4B-202ENST00000588059 TRAV26-2A0A0B4J265 109 aa6.99□□□□□ -1.29
VPS4B-202ENST00000588059 IGHV1-24A0A0C4DH33 117 aa6.99□□□□□ -1.29
VPS4B-202ENST00000588059 FOXA3P55318 350 aaPredicted RBP6.99□□□□□ -1.29
VPS4B-202ENST00000588059 GAGE6Q13070 117 aa6.99□□□□□ -1.29
VPS4B-202ENST00000588059 PEA15Q15121 130 aa6.99□□□□□ -1.29
VPS4B-202ENST00000588059 MIAQ16674 131 aa6.99□□□□□ -1.29
VPS4B-202ENST00000588059 TMEM241Q24JQ0 296 aa6.99□□□□□ -1.29
VPS4B-202ENST00000588059 CT83Q5H943 113 aa6.99□□□□□ -1.29
VPS4B-202ENST00000588059 CHTF8P0CG12 524 aa6.98□□□□□ -1.29
VPS4B-202ENST00000588059 CNBPP62633 177 aaKnown RBP6.98□□□□□ -1.29
VPS4B-202ENST00000588059 SRSF3P84103 164 aaKnown RBP6.98□□□□□ -1.29
VPS4B-202ENST00000588059 FAM74A3Q4VXF1 159 aa6.98□□□□□ -1.29
VPS4B-202ENST00000588059 GATD1Q8NB37 220 aa6.98□□□□□ -1.29
VPS4B-202ENST00000588059 SPACA4Q8TDM5 124 aa6.98□□□□□ -1.29
VPS4B-202ENST00000588059 TSKUQ8WUA8 353 aa6.98□□□□□ -1.29
VPS4B-202ENST00000588059 RNF185Q96GF1 192 aa6.98□□□□□ -1.29
VPS4B-202ENST00000588059 OSTCQ9NRP0 149 aa6.98□□□□□ -1.29
VPS4B-202ENST00000588059 HIGD1CA8MV81 97 aa6.97□□□□□ -1.29
VPS4B-202ENST00000588059 C9JQL5 133 aa6.97□□□□□ -1.29
VPS4B-202ENST00000588059 PHOX2AO14813 284 aa6.97□□□□□ -1.29
VPS4B-202ENST00000588059 RPL23P62829 140 aaKnown RBP6.97□□□□□ -1.29
VPS4B-202ENST00000588059 ADIRFQ15847 76 aa6.97□□□□□ -1.29
VPS4B-202ENST00000588059 IQCJQ1A5X6 159 aa6.97□□□□□ -1.29
VPS4B-202ENST00000588059 CLPSL2Q6UWE3 100 aa6.97□□□□□ -1.29
VPS4B-202ENST00000588059 PRR34Q9NV39 138 aa6.97□□□□□ -1.29
VPS4B-202ENST00000588059 A0A0J9YXV3 536 aa6.96□□□□□ -1.3
VPS4B-202ENST00000588059 A0A1B0GUT8 65 aa6.96□□□□□ -1.3
VPS4B-202ENST00000588059 UBE2L6O14933 153 aa6.96□□□□□ -1.3
VPS4B-202ENST00000588059 AMTP48728 403 aa6.96□□□□□ -1.3
VPS4B-202ENST00000588059 RBX1P62877 108 aa6.96□□□□□ -1.3
VPS4B-202ENST00000588059 COTL1Q14019 142 aa6.96□□□□□ -1.3
VPS4B-202ENST00000588059 CLRN3Q8NCR9 226 aa6.96□□□□□ -1.3
VPS4B-202ENST00000588059 ISOC2Q96AB3 205 aa6.96□□□□□ -1.3
VPS4B-202ENST00000588059 RPL39LQ96EH5 51 aaKnown RBP6.96□□□□□ -1.3
VPS4B-202ENST00000588059 TMEM243Q9BU79 118 aa6.96□□□□□ -1.3
VPS4B-202ENST00000588059 GFRA4Q9GZZ7 299 aa6.96□□□□□ -1.3
VPS4B-202ENST00000588059 PLAC8Q9NZF1 115 aa6.96□□□□□ -1.3
VPS4B-202ENST00000588059 NAT8Q9UHE5 227 aa6.96□□□□□ -1.3
VPS4B-202ENST00000588059 V9GYV3 84 aa6.96□□□□□ -1.3
VPS4B-202ENST00000588059 IGHV3-64A0A075B6Q5 118 aa6.95□□□□□ -1.3
VPS4B-202ENST00000588059 PRR3P79522 188 aaKnown RBP6.95□□□□□ -1.3
VPS4B-202ENST00000588059 LINC00269Q8N2A0 174 aa6.95□□□□□ -1.3
VPS4B-202ENST00000588059 DPH3Q96FX2 82 aa6.95□□□□□ -1.3
VPS4B-202ENST00000588059 hDV102S1A0JD36 115 aa6.94□□□□□ -1.3
VPS4B-202ENST00000588059 FAM231BA6NCW3 169 aa6.94□□□□□ -1.3
VPS4B-202ENST00000588059 SLPIP03973 132 aa6.94□□□□□ -1.3
VPS4B-202ENST00000588059 KRTAP10-8P60410 259 aa6.94□□□□□ -1.3
VPS4B-202ENST00000588059 RAB14P61106 215 aa6.94□□□□□ -1.3
VPS4B-202ENST00000588059 RIGQ13278 110 aa6.94□□□□□ -1.3
VPS4B-202ENST00000588059 C7orf33Q8WU49 177 aa6.94□□□□□ -1.3
VPS4B-202ENST00000588059 SMDT1Q9H4I9 107 aa6.94□□□□□ -1.3
VPS4B-202ENST00000588059 LPAP08519 4548 aa6.94□□□□□ -1.3
VPS4B-202ENST00000588059 NUP35Q8NFH5 326 aa6.93□□□□□ -1.3
VPS4B-202ENST00000588059 TMEM191AQ9H0A3 160 aa6.93□□□□□ -1.3
VPS4B-202ENST00000588059 NAT8BQ9UHF3 227 aa6.93□□□□□ -1.3
VPS4B-202ENST00000588059 IGLV10-54A0A075B6I4 117 aa6.92□□□□□ -1.3
VPS4B-202ENST00000588059 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.92□□□□□ -1.3
VPS4B-202ENST00000588059 SDHAF1A6NFY7 115 aa6.92□□□□□ -1.3
VPS4B-202ENST00000588059 PMCHP20382 165 aa6.92□□□□□ -1.3
VPS4B-202ENST00000588059 REG3AQ06141 175 aa6.92□□□□□ -1.3
VPS4B-202ENST00000588059 AMN1Q8IY45 258 aa6.92□□□□□ -1.3
VPS4B-202ENST00000588059 C20orf203Q8NBC4 194 aa6.92□□□□□ -1.3
VPS4B-202ENST00000588059 IGLV4-60A0A075B6I1 120 aa6.91□□□□□ -1.3
VPS4B-202ENST00000588059 A0A1B0GUV1 79 aa6.91□□□□□ -1.3
VPS4B-202ENST00000588059 APCSP02743 223 aa6.91□□□□□ -1.3
VPS4B-202ENST00000588059 RAB4AP20338 218 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 165.7 ms