RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 C9JQL5 133 aa7.24□□□□□ -1.25
CLIP3-203ENST00000586457 I3L3M4 83 aa7.24□□□□□ -1.25
CLIP3-203ENST00000586457 NCR2O95944 276 aa7.24□□□□□ -1.25
CLIP3-203ENST00000586457 HLA-DQA1P01909 254 aa7.24□□□□□ -1.25
CLIP3-203ENST00000586457 APCSP02743 223 aa7.24□□□□□ -1.25
CLIP3-203ENST00000586457 CLPSL2Q6UWE3 100 aa7.24□□□□□ -1.25
CLIP3-203ENST00000586457 NUP35Q8NFH5 326 aa7.24□□□□□ -1.25
CLIP3-203ENST00000586457 RPL39LQ96EH5 51 aaKnown RBP7.24□□□□□ -1.25
CLIP3-203ENST00000586457 MRAP2Q96G30 205 aa7.24□□□□□ -1.25
CLIP3-203ENST00000586457 BTF3L4Q96K17 158 aa7.24□□□□□ -1.25
CLIP3-203ENST00000586457 SDHAF1A6NFY7 115 aa7.23□□□□□ -1.25
CLIP3-203ENST00000586457 F8W036 122 aa7.23□□□□□ -1.25
CLIP3-203ENST00000586457 PPP1R2P9O14990 202 aa7.23□□□□□ -1.25
CLIP3-203ENST00000586457 CAMPP49913 170 aa7.23□□□□□ -1.25
CLIP3-203ENST00000586457 REG3AQ06141 175 aa7.23□□□□□ -1.25
CLIP3-203ENST00000586457 RNASEKQ6P5S7 137 aaKnown RBP7.23□□□□□ -1.25
CLIP3-203ENST00000586457 ENHOQ6UWT2 76 aa7.23□□□□□ -1.25
CLIP3-203ENST00000586457 TMEM101Q96IK0 257 aa7.23□□□□□ -1.25
CLIP3-203ENST00000586457 TRAV8-4A0A0B4J246 113 aa7.22□□□□□ -1.25
CLIP3-203ENST00000586457 A0A1B0GUV1 79 aa7.22□□□□□ -1.25
CLIP3-203ENST00000586457 RAB4AP20338 218 aa7.22□□□□□ -1.25
CLIP3-203ENST00000586457 FCER1GP30273 86 aa7.22□□□□□ -1.25
CLIP3-203ENST00000586457 AMN1Q8IY45 258 aa7.22□□□□□ -1.25
CLIP3-203ENST00000586457 IGKV3OR2-268A0A0C4DH90 116 aa7.21□□□□□ -1.26
CLIP3-203ENST00000586457 SMIM27A0A1W2PRY6 76 aa7.21□□□□□ -1.26
CLIP3-203ENST00000586457 H7C423 109 aa7.21□□□□□ -1.26
CLIP3-203ENST00000586457 VCYO14598 125 aa7.21□□□□□ -1.26
CLIP3-203ENST00000586457 MT-ND4LP03901 98 aa7.21□□□□□ -1.26
CLIP3-203ENST00000586457 CKS2P33552 79 aa7.21□□□□□ -1.26
CLIP3-203ENST00000586457 SMAGPQ0VAQ4 97 aa7.21□□□□□ -1.26
CLIP3-203ENST00000586457 PNRC1Q12796 327 aaPredicted RBP7.21□□□□□ -1.26
CLIP3-203ENST00000586457 IGLV10-54A0A075B6I4 117 aa7.2□□□□□ -1.26
CLIP3-203ENST00000586457 TRBV6-5A0A0K0K1A5 114 aa7.2□□□□□ -1.26
CLIP3-203ENST00000586457 KRTAP10-1P60331 282 aa7.2□□□□□ -1.26
CLIP3-203ENST00000586457 DGAT2L7PQ6IED9 249 aa7.2□□□□□ -1.26
CLIP3-203ENST00000586457 MRPL54Q6P161 138 aaKnown RBP7.2□□□□□ -1.26
CLIP3-203ENST00000586457 KIR2DL4Q99706 377 aa7.2□□□□□ -1.26
CLIP3-203ENST00000586457 PKHD1P08F94 4074 aa7.19□□□□□ -1.26
CLIP3-203ENST00000586457 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.19□□□□□ -1.26
CLIP3-203ENST00000586457 IGKV2-29A2NJV5 120 aaPredicted RBP7.19□□□□□ -1.26
CLIP3-203ENST00000586457 HBBP68871 147 aa7.19□□□□□ -1.26
CLIP3-203ENST00000586457 CLLU1Q5K131 121 aa7.19□□□□□ -1.26
CLIP3-203ENST00000586457 ANAPC16Q96DE5 110 aa7.19□□□□□ -1.26
CLIP3-203ENST00000586457 PRR34Q9NV39 138 aa7.19□□□□□ -1.26
CLIP3-203ENST00000586457 IGLV4-60A0A075B6I1 120 aa7.18□□□□□ -1.26
CLIP3-203ENST00000586457 LINC00862A6NCI5 91 aa7.18□□□□□ -1.26
CLIP3-203ENST00000586457 USP17L23D6RBM5 183 aa7.18□□□□□ -1.26
CLIP3-203ENST00000586457 SMKR1H3BMG3 65 aa7.18□□□□□ -1.26
CLIP3-203ENST00000586457 FGF6P10767 208 aa7.18□□□□□ -1.26
CLIP3-203ENST00000586457 ZNF25P17030 456 aaPredicted RBP7.18□□□□□ -1.26
CLIP3-203ENST00000586457 FAM104BQ5XKR9 115 aa7.18□□□□□ -1.26
CLIP3-203ENST00000586457 C20orf203Q8NBC4 194 aa7.18□□□□□ -1.26
CLIP3-203ENST00000586457 OR5A1Q8NGJ0 315 aa7.18□□□□□ -1.26
CLIP3-203ENST00000586457 TMEM18Q96B42 140 aa7.18□□□□□ -1.26
CLIP3-203ENST00000586457 RNF185Q96GF1 192 aa7.18□□□□□ -1.26
CLIP3-203ENST00000586457 TMEM70Q9BUB7 260 aa7.18□□□□□ -1.26
CLIP3-203ENST00000586457 AP5S1Q9NUS5 200 aa7.18□□□□□ -1.26
CLIP3-203ENST00000586457 TMEM242Q9NWH2 141 aa7.18□□□□□ -1.26
CLIP3-203ENST00000586457 EPM2AB3EWF7 344 aa7.17□□□□□ -1.26
CLIP3-203ENST00000586457 FAM229AH3BQW9 127 aa7.17□□□□□ -1.26
CLIP3-203ENST00000586457 TCAPO15273 167 aa7.17□□□□□ -1.26
CLIP3-203ENST00000586457 SUMO2P61956 95 aaKnown RBP7.17□□□□□ -1.26
CLIP3-203ENST00000586457 WFDC2Q14508 124 aa7.17□□□□□ -1.26
CLIP3-203ENST00000586457 MRPL51Q4U2R6 128 aaKnown RBP7.17□□□□□ -1.26
CLIP3-203ENST00000586457 CFAP161Q6P656 301 aa7.17□□□□□ -1.26
CLIP3-203ENST00000586457 Q8N1X5 172 aa7.17□□□□□ -1.26
CLIP3-203ENST00000586457 CLRN3Q8NCR9 226 aa7.17□□□□□ -1.26
CLIP3-203ENST00000586457 TRBV27A0A0K0K1C4 114 aa7.16□□□□□ -1.26
CLIP3-203ENST00000586457 hDV102S1A0JD36 115 aa7.16□□□□□ -1.26
CLIP3-203ENST00000586457 C7orf77A4D0Y5 90 aa7.16□□□□□ -1.26
CLIP3-203ENST00000586457 GAS8-AS1O95177 125 aa7.16□□□□□ -1.26
CLIP3-203ENST00000586457 PPBPP02775 128 aa7.16□□□□□ -1.26
CLIP3-203ENST00000586457 RPS10P46783 165 aaKnown RBP7.16□□□□□ -1.26
CLIP3-203ENST00000586457 UQCC3Q6UW78 93 aa7.16□□□□□ -1.26
CLIP3-203ENST00000586457 ATP5L2Q7Z4Y8 100 aa7.16□□□□□ -1.26
CLIP3-203ENST00000586457 C20orf78Q9BR46 151 aa7.16□□□□□ -1.26
CLIP3-203ENST00000586457 TSHBP01222 138 aa7.15□□□□□ -1.26
CLIP3-203ENST00000586457 POLR2KP53803 58 aaKnown RBP7.15□□□□□ -1.26
CLIP3-203ENST00000586457 SS18Q15532 418 aa7.15□□□□□ -1.26
CLIP3-203ENST00000586457 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.14□□□□□ -1.27
CLIP3-203ENST00000586457 GAGE12HA6NDE8 117 aa7.14□□□□□ -1.27
CLIP3-203ENST00000586457 D6R8Y8 96 aa7.14□□□□□ -1.27
CLIP3-203ENST00000586457 TNFRSF6BO95407 300 aa7.14□□□□□ -1.27
CLIP3-203ENST00000586457 SMR3BP02814 79 aaPredicted RBP7.14□□□□□ -1.27
CLIP3-203ENST00000586457 RAB5AP20339 215 aa7.14□□□□□ -1.27
CLIP3-203ENST00000586457 XGP55808 180 aa7.14□□□□□ -1.27
CLIP3-203ENST00000586457 ORMDL3Q8N138 153 aa7.14□□□□□ -1.27
CLIP3-203ENST00000586457 DPH3Q96FX2 82 aa7.14□□□□□ -1.27
CLIP3-203ENST00000586457 ESDP10768 282 aa7.13□□□□□ -1.27
CLIP3-203ENST00000586457 LINC01620Q4KN68 170 aa7.13□□□□□ -1.27
CLIP3-203ENST00000586457 TMEM136Q6ZRR5 245 aa7.13□□□□□ -1.27
CLIP3-203ENST00000586457 ZNF664Q8N3J9 261 aa7.13□□□□□ -1.27
CLIP3-203ENST00000586457 NRACQ8N912 160 aa7.13□□□□□ -1.27
CLIP3-203ENST00000586457 TRBV24-1A0A075B6N3 115 aa7.12□□□□□ -1.27
CLIP3-203ENST00000586457 TMEM218A2RU14 115 aa7.12□□□□□ -1.27
CLIP3-203ENST00000586457 PRSS1P07477 247 aa7.12□□□□□ -1.27
CLIP3-203ENST00000586457 S100PP25815 95 aa7.12□□□□□ -1.27
CLIP3-203ENST00000586457 XCL1P47992 114 aa7.12□□□□□ -1.27
CLIP3-203ENST00000586457 CHCHD10Q8WYQ3 142 aaPredicted RBP7.12□□□□□ -1.27
CLIP3-203ENST00000586457 PRELID3AQ96N28 172 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms