RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 CST9LQ9H4G1 147 aa10.16□□□□□ -0.78
LIG3-205ENST00000585941 TRBV7-3A0A075B6L6 115 aa10.15□□□□□ -0.78
LIG3-205ENST00000585941 KRTAP24-1Q3LI83 254 aa10.15□□□□□ -0.78
LIG3-205ENST00000585941 COL5A1-AS1Q5SY13 56 aa10.15□□□□□ -0.78
LIG3-205ENST00000585941 C12orf54Q6X4T0 127 aa10.15□□□□□ -0.78
LIG3-205ENST00000585941 GAGE12BA1L429 117 aa10.15□□□□□ -0.79
LIG3-205ENST00000585941 GAGE7O76087 117 aa10.15□□□□□ -0.79
LIG3-205ENST00000585941 GAGE12FP0CL80 117 aa10.15□□□□□ -0.79
LIG3-205ENST00000585941 GAGE12GP0CL81 117 aa10.15□□□□□ -0.79
LIG3-205ENST00000585941 GAGE12IP0CL82 117 aa10.15□□□□□ -0.79
LIG3-205ENST00000585941 DEFB104AQ8WTQ1 72 aa10.15□□□□□ -0.79
LIG3-205ENST00000585941 TRBV6-4A0A1B0GX49 114 aa10.14□□□□□ -0.79
LIG3-205ENST00000585941 BATFQ16520 125 aa10.14□□□□□ -0.79
LIG3-205ENST00000585941 TMEM97Q5BJF2 176 aa10.14□□□□□ -0.79
LIG3-205ENST00000585941 SHISA2Q6UWI4 295 aa10.14□□□□□ -0.79
LIG3-205ENST00000585941 DAZ4Q86SG3 579 aaKnown RBP10.14□□□□□ -0.79
LIG3-205ENST00000585941 DAZ3Q9NR90 486 aaKnown RBP10.14□□□□□ -0.79
LIG3-205ENST00000585941 SPANXA1Q9NS26 97 aa10.14□□□□□ -0.79
LIG3-205ENST00000585941 C3orf56Q8N813 242 aa10.13□□□□□ -0.79
LIG3-205ENST00000585941 ZNRF2Q8NHG8 242 aa10.13□□□□□ -0.79
LIG3-205ENST00000585941 HINT1P49773 126 aaPredicted RBP10.12□□□□□ -0.79
LIG3-205ENST00000585941 C2orf91Q6ZV80 131 aa10.12□□□□□ -0.79
LIG3-205ENST00000585941 SLC25A29Q8N8R3 303 aa10.12□□□□□ -0.79
LIG3-205ENST00000585941 CHCHD7Q9BUK0 85 aa10.12□□□□□ -0.79
LIG3-205ENST00000585941 VCX2Q9H322 139 aa10.12□□□□□ -0.79
LIG3-205ENST00000585941 Q9UF83 564 aa10.12□□□□□ -0.79
LIG3-205ENST00000585941 IGKV2D-26A0A0A0MRZ7 120 aa10.12□□□□□ -0.79
LIG3-205ENST00000585941 HERVK_113P61574 105 aa10.12□□□□□ -0.79
LIG3-205ENST00000585941 SMAGPQ0VAQ4 97 aa10.12□□□□□ -0.79
LIG3-205ENST00000585941 PCP2Q8IVA1 136 aa10.12□□□□□ -0.79
LIG3-205ENST00000585941 LINC00612Q8N6U2 182 aa10.12□□□□□ -0.79
LIG3-205ENST00000585941 ZMAT5Q9UDW3 170 aaKnown RBP10.12□□□□□ -0.79
LIG3-205ENST00000585941 X6R8D5 127 aa10.12□□□□□ -0.79
LIG3-205ENST00000585941 IGLV4-69A0A075B6H9 119 aa10.11□□□□□ -0.79
LIG3-205ENST00000585941 IGLV4-3A0A075B6K6 122 aa10.11□□□□□ -0.79
LIG3-205ENST00000585941 TRGV4A0A0C4DH28 118 aa10.11□□□□□ -0.79
LIG3-205ENST00000585941 UBE2D3P61077 147 aa10.11□□□□□ -0.79
LIG3-205ENST00000585941 UBE2D2P62837 147 aa10.11□□□□□ -0.79
LIG3-205ENST00000585941 NFE4Q86UQ8 179 aa10.11□□□□□ -0.79
LIG3-205ENST00000585941 TIMM21Q9BVV7 248 aa10.11□□□□□ -0.79
LIG3-205ENST00000585941 HIGD1BQ9P298 99 aa10.11□□□□□ -0.79
LIG3-205ENST00000585941 TP73-AS1Q9UF72 201 aa10.11□□□□□ -0.79
LIG3-205ENST00000585941 E9PLD3 99 aa10.1□□□□□ -0.79
LIG3-205ENST00000585941 TCTAP57738 103 aa10.1□□□□□ -0.79
LIG3-205ENST00000585941 MPV17L2Q567V2 206 aa10.1□□□□□ -0.79
LIG3-205ENST00000585941 OR11H2Q8NH07 326 aa10.1□□□□□ -0.79
LIG3-205ENST00000585941 PHLDA1Q8WV24 401 aaPredicted RBP10.1□□□□□ -0.79
LIG3-205ENST00000585941 A0A1B0GV90 55 aa10.09□□□□□ -0.79
LIG3-205ENST00000585941 C11orf86A6NJI1 115 aa10.09□□□□□ -0.79
LIG3-205ENST00000585941 LYRM9A8MSI8 78 aa10.09□□□□□ -0.79
LIG3-205ENST00000585941 AMELXQ99217 191 aa10.09□□□□□ -0.79
LIG3-205ENST00000585941 PRADC1Q9BSG0 188 aa10.09□□□□□ -0.79
LIG3-205ENST00000585941 IGHV3-38A0A0C4DH36 116 aa10.09□□□□□ -0.79
LIG3-205ENST00000585941 EMP1P54849 157 aa10.09□□□□□ -0.79
LIG3-205ENST00000585941 HSD52Q0P140 79 aa10.09□□□□□ -0.79
LIG3-205ENST00000585941 LURAP1LQ8IV03 231 aa10.09□□□□□ -0.79
LIG3-205ENST00000585941 GTSF1LQ9H1H1 148 aa10.09□□□□□ -0.79
LIG3-205ENST00000585941 UBE2D4Q9Y2X8 147 aa10.09□□□□□ -0.79
LIG3-205ENST00000585941 MRPS36P82909 103 aaKnown RBP10.08□□□□□ -0.8
LIG3-205ENST00000585941 FHL2Q14192 279 aa10.08□□□□□ -0.8
LIG3-205ENST00000585941 BVES-AS1Q5T3Y7 98 aa10.08□□□□□ -0.8
LIG3-205ENST00000585941 OPRPNQ99935 248 aaPredicted RBP10.07□□□□□ -0.8
LIG3-205ENST00000585941 TRAV8-6A0A0B4J262 113 aa10.06□□□□□ -0.8
LIG3-205ENST00000585941 GAGE12JA6NER3 117 aa10.06□□□□□ -0.8
LIG3-205ENST00000585941 IGHV4-30-4P0DP06 118 aa10.06□□□□□ -0.8
LIG3-205ENST00000585941 MIFP14174 115 aa10.06□□□□□ -0.8
LIG3-205ENST00000585941 SEC11AP67812 179 aa10.06□□□□□ -0.8
LIG3-205ENST00000585941 GAGE1Q13065 139 aa10.06□□□□□ -0.8
LIG3-205ENST00000585941 GAGE4Q13068 117 aa10.06□□□□□ -0.8
LIG3-205ENST00000585941 GAGE5Q13069 117 aa10.06□□□□□ -0.8
LIG3-205ENST00000585941 DEFB135Q30KP9 77 aa10.06□□□□□ -0.8
LIG3-205ENST00000585941 GAGE13Q4V321 117 aa10.06□□□□□ -0.8
LIG3-205ENST00000585941 CHAC1Q9BUX1 264 aa10.06□□□□□ -0.8
LIG3-205ENST00000585941 CSDC2Q9Y534 153 aaKnown RBP10.06□□□□□ -0.8
LIG3-205ENST00000585941 TRBV25-1A0A075B6N4 114 aa10.06□□□□□ -0.8
LIG3-205ENST00000585941 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.06□□□□□ -0.8
LIG3-205ENST00000585941 IGKV2-29A2NJV5 120 aaPredicted RBP10.06□□□□□ -0.8
LIG3-205ENST00000585941 DEFB130BP0DP73 79 aa10.06□□□□□ -0.8
LIG3-205ENST00000585941 DEFB130AP0DP74 79 aa10.06□□□□□ -0.8
LIG3-205ENST00000585941 TMEM170BQ5T4T1 132 aa10.06□□□□□ -0.8
LIG3-205ENST00000585941 DGAT2L7PQ6IED9 249 aa10.06□□□□□ -0.8
LIG3-205ENST00000585941 MYMXA0A1B0GTQ4 84 aa10.05□□□□□ -0.8
LIG3-205ENST00000585941 H7C423 109 aa10.05□□□□□ -0.8
LIG3-205ENST00000585941 EGFEM1PQ0D2K5 195 aa10.04□□□□□ -0.8
LIG3-205ENST00000585941 FAM104AQ969W3 186 aa10.04□□□□□ -0.8
LIG3-205ENST00000585941 RNF183Q96D59 192 aa10.04□□□□□ -0.8
LIG3-205ENST00000585941 A8MZ25 164 aa10.03□□□□□ -0.8
LIG3-205ENST00000585941 TAL2Q16559 108 aa10.03□□□□□ -0.8
LIG3-205ENST00000585941 FAM222AQ5U5X8 452 aa10.03□□□□□ -0.8
LIG3-205ENST00000585941 PRIMA1Q86XR5 153 aa10.03□□□□□ -0.8
LIG3-205ENST00000585941 ORAOV1Q8WV07 137 aa10.03□□□□□ -0.8
LIG3-205ENST00000585941 TMEM243Q9BU79 118 aa10.03□□□□□ -0.8
LIG3-205ENST00000585941 TTTY13Q9BZ97 58 aa10.03□□□□□ -0.8
LIG3-205ENST00000585941 TINCRA0A1B0GVN0 87 aa10.02□□□□□ -0.8
LIG3-205ENST00000585941 A6NDN8 102 aa10.02□□□□□ -0.8
LIG3-205ENST00000585941 CEMP1Q6PRD7 247 aaPredicted RBP10.02□□□□□ -0.8
LIG3-205ENST00000585941 NTM-AS1Q6ZSK4 140 aa10.02□□□□□ -0.8
LIG3-205ENST00000585941 SBSPONQ8IVN8 264 aa10.02□□□□□ -0.8
LIG3-205ENST00000585941 MAPKAPK5-AS1Q8N8E1 139 aa10.02□□□□□ -0.8
LIG3-205ENST00000585941 PRO0255Q9UI72 69 aa10.02□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms