RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 FAM231BA6NCW3 169 aa8.23□□□□□ -1.09
SS18-225ENST00000585121 CRPP02741 224 aa8.23□□□□□ -1.09
SS18-225ENST00000585121 WDR73Q6P4I2 378 aa8.23□□□□□ -1.09
SS18-225ENST00000585121 RPP21Q9H633 154 aaKnown RBP8.23□□□□□ -1.09
SS18-225ENST00000585121 SMIM27A0A1W2PRY6 76 aa8.22□□□□□ -1.09
SS18-225ENST00000585121 A8MWL6 223 aa8.22□□□□□ -1.09
SS18-225ENST00000585121 NTF3P20783 257 aa8.22□□□□□ -1.09
SS18-225ENST00000585121 GFRA4Q9GZZ7 299 aa8.22□□□□□ -1.09
SS18-225ENST00000585121 DPH3P1Q9H4G8 78 aa8.22□□□□□ -1.09
SS18-225ENST00000585121 TRBV25-1A0A075B6N4 114 aa8.21□□□□□ -1.1
SS18-225ENST00000585121 M0QY20 66 aa8.21□□□□□ -1.1
SS18-225ENST00000585121 LECT2O14960 151 aa8.21□□□□□ -1.1
SS18-225ENST00000585121 RAB5AP20339 215 aa8.21□□□□□ -1.1
SS18-225ENST00000585121 TWIST1Q15672 202 aa8.21□□□□□ -1.1
SS18-225ENST00000585121 SUMO4Q6EEV6 95 aa8.21□□□□□ -1.1
SS18-225ENST00000585121 SMIM15Q7Z3B0 74 aa8.21□□□□□ -1.1
SS18-225ENST00000585121 Q8N976 141 aa8.21□□□□□ -1.1
SS18-225ENST00000585121 TSKUQ8WUA8 353 aa8.21□□□□□ -1.1
SS18-225ENST00000585121 BAALCQ8WXS3 180 aa8.21□□□□□ -1.1
SS18-225ENST00000585121 TGIF2-C20orf24A0A0A6YYL0 155 aa8.2□□□□□ -1.1
SS18-225ENST00000585121 EPM2AB3EWF7 344 aa8.2□□□□□ -1.1
SS18-225ENST00000585121 ANGP03950 147 aaKnown RBP8.2□□□□□ -1.1
SS18-225ENST00000585121 FOXA3P55318 350 aaPredicted RBP8.2□□□□□ -1.1
SS18-225ENST00000585121 XGP55808 180 aa8.2□□□□□ -1.1
SS18-225ENST00000585121 RASL11AQ6T310 242 aa8.2□□□□□ -1.1
SS18-225ENST00000585121 TMEM70Q9BUB7 260 aa8.2□□□□□ -1.1
SS18-225ENST00000585121 C1orf43Q9BWL3 253 aa8.2□□□□□ -1.1
SS18-225ENST00000585121 IGHV1-24A0A0C4DH33 117 aa8.19□□□□□ -1.1
SS18-225ENST00000585121 CTRLP40313 264 aa8.19□□□□□ -1.1
SS18-225ENST00000585121 MPV17L2Q567V2 206 aa8.19□□□□□ -1.1
SS18-225ENST00000585121 FRZBQ92765 325 aa8.19□□□□□ -1.1
SS18-225ENST00000585121 NAT8BQ9UHF3 227 aa8.19□□□□□ -1.1
SS18-225ENST00000585121 GAGE6Q13070 117 aa8.19□□□□□ -1.1
SS18-225ENST00000585121 WFDC2Q14508 124 aa8.19□□□□□ -1.1
SS18-225ENST00000585121 COX19Q49B96 90 aa8.19□□□□□ -1.1
SS18-225ENST00000585121 NTM-AS1Q6ZSK4 140 aa8.19□□□□□ -1.1
SS18-225ENST00000585121 NIT2Q9NQR4 276 aa8.19□□□□□ -1.1
SS18-225ENST00000585121 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.18□□□□□ -1.1
SS18-225ENST00000585121 RPS10P46783 165 aaKnown RBP8.18□□□□□ -1.1
SS18-225ENST00000585121 MIAQ16674 131 aa8.18□□□□□ -1.1
SS18-225ENST00000585121 IQCJQ1A5X6 159 aa8.18□□□□□ -1.1
SS18-225ENST00000585121 C14orf177Q52M58 125 aa8.18□□□□□ -1.1
SS18-225ENST00000585121 CNFNQ9BYD5 112 aa8.18□□□□□ -1.1
SS18-225ENST00000585121 DNAH8Q96JB1 4490 aa8.17□□□□□ -1.1
SS18-225ENST00000585121 ENHOQ6UWT2 76 aa8.17□□□□□ -1.1
SS18-225ENST00000585121 NUP35Q8NFH5 326 aa8.17□□□□□ -1.1
SS18-225ENST00000585121 BORCS7Q96B45 105 aa8.17□□□□□ -1.1
SS18-225ENST00000585121 HIGD1CA8MV81 97 aa8.16□□□□□ -1.1
SS18-225ENST00000585121 FAM229AH3BQW9 127 aa8.16□□□□□ -1.1
SS18-225ENST00000585121 RBX1P62877 108 aa8.16□□□□□ -1.1
SS18-225ENST00000585121 COTL1Q14019 142 aa8.16□□□□□ -1.1
SS18-225ENST00000585121 ATP5L2Q7Z4Y8 100 aa8.16□□□□□ -1.1
SS18-225ENST00000585121 TMEM243Q9BU79 118 aa8.16□□□□□ -1.1
SS18-225ENST00000585121 FAT1Q14517 4588 aa8.16□□□□□ -1.1
SS18-225ENST00000585121 C1orf196B1AJZ1 125 aa8.15□□□□□ -1.1
SS18-225ENST00000585121 UBE2L6O14933 153 aa8.15□□□□□ -1.1
SS18-225ENST00000585121 GTSF1Q8WW33 167 aa8.15□□□□□ -1.1
SS18-225ENST00000585121 PGLYRP4Q96LB8 373 aa8.15□□□□□ -1.1
SS18-225ENST00000585121 SMR3BP02814 79 aaPredicted RBP8.14□□□□□ -1.11
SS18-225ENST00000585121 Q5VSD8 79 aa8.14□□□□□ -1.11
SS18-225ENST00000585121 LINC00269Q8N2A0 174 aa8.14□□□□□ -1.11
SS18-225ENST00000585121 GNB1LQ9BYB4 327 aa8.14□□□□□ -1.11
SS18-225ENST00000585121 VPS13BQ7Z7G8 4022 aa8.14□□□□□ -1.11
SS18-225ENST00000585121 A0A1B0GW15 77 aa8.13□□□□□ -1.11
SS18-225ENST00000585121 MT-ND6P03923 174 aa8.13□□□□□ -1.11
SS18-225ENST00000585121 AMTP48728 403 aa8.13□□□□□ -1.11
SS18-225ENST00000585121 RAB5BP61020 215 aa8.13□□□□□ -1.11
SS18-225ENST00000585121 CLPSL2Q6UWE3 100 aa8.13□□□□□ -1.11
SS18-225ENST00000585121 GATD1Q8NB37 220 aa8.13□□□□□ -1.11
SS18-225ENST00000585121 PRR34Q9NV39 138 aa8.13□□□□□ -1.11
SS18-225ENST00000585121 A0A1B0GUV1 79 aa8.13□□□□□ -1.11
SS18-225ENST00000585121 HLA-DQA1P01909 254 aa8.13□□□□□ -1.11
SS18-225ENST00000585121 TRGC2P03986 189 aa8.13□□□□□ -1.11
SS18-225ENST00000585121 HAMPP81172 84 aa8.13□□□□□ -1.11
SS18-225ENST00000585121 TMA7Q9Y2S6 64 aaKnown RBP8.13□□□□□ -1.11
SS18-225ENST00000585121 TRAV26-2A0A0B4J265 109 aa8.12□□□□□ -1.11
SS18-225ENST00000585121 A0A1B0GUT8 65 aa8.12□□□□□ -1.11
SS18-225ENST00000585121 INAFM2P0DMQ5 153 aa8.12□□□□□ -1.11
SS18-225ENST00000585121 REG3AQ06141 175 aa8.12□□□□□ -1.11
SS18-225ENST00000585121 RIGQ13278 110 aa8.12□□□□□ -1.11
SS18-225ENST00000585121 FAM30AQ9NZY2 134 aa8.12□□□□□ -1.11
SS18-225ENST00000585121 TRAPPC1Q9Y5R8 145 aa8.12□□□□□ -1.11
SS18-225ENST00000585121 TRAV8-4A0A0B4J246 113 aa8.11□□□□□ -1.11
SS18-225ENST00000585121 A0A1B0GXF2 115 aa8.11□□□□□ -1.11
SS18-225ENST00000585121 USP17L23D6RBM5 183 aa8.11□□□□□ -1.11
SS18-225ENST00000585121 S100A8P05109 93 aa8.11□□□□□ -1.11
SS18-225ENST00000585121 MRPL54Q6P161 138 aaKnown RBP8.11□□□□□ -1.11
SS18-225ENST00000585121 DEFB104AQ8WTQ1 72 aa8.11□□□□□ -1.11
SS18-225ENST00000585121 PHOX2AO14813 284 aa8.1□□□□□ -1.11
SS18-225ENST00000585121 NCR2O95944 276 aa8.1□□□□□ -1.11
SS18-225ENST00000585121 HBBP68871 147 aa8.1□□□□□ -1.11
SS18-225ENST00000585121 FABP9Q0Z7S8 132 aa8.1□□□□□ -1.11
SS18-225ENST00000585121 TMEM136Q6ZRR5 245 aa8.1□□□□□ -1.11
SS18-225ENST00000585121 APCSP02743 223 aa8.09□□□□□ -1.11
SS18-225ENST00000585121 PMCHP20382 165 aa8.09□□□□□ -1.11
SS18-225ENST00000585121 LINC01620Q4KN68 170 aa8.09□□□□□ -1.11
SS18-225ENST00000585121 AMMECR1LQ6DCA0 310 aa8.09□□□□□ -1.11
SS18-225ENST00000585121 Q6ZSA8 131 aa8.09□□□□□ -1.11
SS18-225ENST00000585121 C20orf203Q8NBC4 194 aa8.09□□□□□ -1.11
SS18-225ENST00000585121 RPL39LQ96EH5 51 aaKnown RBP8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 146.1 ms