RNA–Protein interactions for RNA: ENST00000584541.1

RFFL-211, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 563 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-211ENST00000584541 RAB5BP61020 215 aa12.59□□□□□ -0.39
RFFL-211ENST00000584541 IQCJQ1A5X6 159 aa12.59□□□□□ -0.39
RFFL-211ENST00000584541 FA2HQ7L5A8 372 aa12.59□□□□□ -0.39
RFFL-211ENST00000584541 TMEM243Q9BU79 118 aa12.59□□□□□ -0.39
RFFL-211ENST00000584541 LGALS9CQ6DKI2 356 aa12.58□□□□□ -0.4
RFFL-211ENST00000584541 CHCHD5Q9BSY4 110 aa12.58□□□□□ -0.4
RFFL-211ENST00000584541 STARD9Q9P2P6 4700 aa12.57□□□□□ -0.4
RFFL-211ENST00000584541 UBE2L6O14933 153 aa12.57□□□□□ -0.4
RFFL-211ENST00000584541 PKIAP61925 76 aa12.57□□□□□ -0.4
RFFL-211ENST00000584541 ORMDL2Q53FV1 153 aa12.57□□□□□ -0.4
RFFL-211ENST00000584541 UPK3BQ9BT76 320 aa12.57□□□□□ -0.4
RFFL-211ENST00000584541 KMT2CQ8NEZ4 4911 aaKnown RBP12.56□□□□□ -0.4
RFFL-211ENST00000584541 Q0VG73 95 aa12.56□□□□□ -0.4
RFFL-211ENST00000584541 LAGE3Q14657 143 aa12.56□□□□□ -0.4
RFFL-211ENST00000584541 BAGE3Q86Y29 109 aa12.56□□□□□ -0.4
RFFL-211ENST00000584541 TMEM18Q96B42 140 aa12.56□□□□□ -0.4
RFFL-211ENST00000584541 LINC00614P0C842 121 aa12.55□□□□□ -0.4
RFFL-211ENST00000584541 G0S2P27469 103 aa12.55□□□□□ -0.4
RFFL-211ENST00000584541 NIT1Q86X76 327 aa12.55□□□□□ -0.4
RFFL-211ENST00000584541 TMEM262E9PQX1 116 aa12.54□□□□□ -0.4
RFFL-211ENST00000584541 H7C423 109 aa12.54□□□□□ -0.4
RFFL-211ENST00000584541 SIVA1O15304 175 aa12.54□□□□□ -0.4
RFFL-211ENST00000584541 HIST1H2BKO60814 126 aa12.54□□□□□ -0.4
RFFL-211ENST00000584541 HIST1H2BJP06899 126 aa12.54□□□□□ -0.4
RFFL-211ENST00000584541 ESDP10768 282 aa12.54□□□□□ -0.4
RFFL-211ENST00000584541 HIST1H2BOP23527 126 aa12.54□□□□□ -0.4
RFFL-211ENST00000584541 HIST1H2BBP33778 126 aa12.54□□□□□ -0.4
RFFL-211ENST00000584541 HIST1H2BDP58876 126 aa12.54□□□□□ -0.4
RFFL-211ENST00000584541 HIST1H2BCP62807 126 aa12.54□□□□□ -0.4
RFFL-211ENST00000584541 SMAGPQ0VAQ4 97 aa12.54□□□□□ -0.4
RFFL-211ENST00000584541 HIST2H2BEQ16778 126 aa12.54□□□□□ -0.4
RFFL-211ENST00000584541 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.54□□□□□ -0.4
RFFL-211ENST00000584541 RNASEKQ6P5S7 137 aaKnown RBP12.54□□□□□ -0.4
RFFL-211ENST00000584541 WFDC10BQ8IUB3 73 aa12.54□□□□□ -0.4
RFFL-211ENST00000584541 HIST1H2BHQ93079 126 aa12.54□□□□□ -0.4
RFFL-211ENST00000584541 HIST1H2BNQ99877 126 aa12.54□□□□□ -0.4
RFFL-211ENST00000584541 HIST1H2BMQ99879 126 aa12.54□□□□□ -0.4
RFFL-211ENST00000584541 CHCHD7Q9BUK0 85 aa12.54□□□□□ -0.4
RFFL-211ENST00000584541 AP5S1Q9NUS5 200 aa12.54□□□□□ -0.4
RFFL-211ENST00000584541 LINC01546A6NGU7 62 aa12.53□□□□□ -0.4
RFFL-211ENST00000584541 LY6G6CO95867 125 aa12.53□□□□□ -0.4
RFFL-211ENST00000584541 GAGE6Q13070 117 aa12.53□□□□□ -0.4
RFFL-211ENST00000584541 LINC00476Q8WZB0 136 aa12.53□□□□□ -0.4
RFFL-211ENST00000584541 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.52□□□□□ -0.41
RFFL-211ENST00000584541 A0A087WX48 190 aa12.52□□□□□ -0.41
RFFL-211ENST00000584541 IGKV2-29A2NJV5 120 aaPredicted RBP12.52□□□□□ -0.41
RFFL-211ENST00000584541 C20orf203Q8NBC4 194 aa12.52□□□□□ -0.41
RFFL-211ENST00000584541 CHCHD1Q96BP2 118 aaKnown RBP12.52□□□□□ -0.41
RFFL-211ENST00000584541 Q9H8V8 135 aa12.52□□□□□ -0.41
RFFL-211ENST00000584541 RYR3Q15413 4870 aa12.52□□□□□ -0.41
RFFL-211ENST00000584541 AMMECR1LQ6DCA0 310 aa12.51□□□□□ -0.41
RFFL-211ENST00000584541 TENM2Q9NT68 2774 aa12.51□□□□□ -0.41
RFFL-211ENST00000584541 BTF3P20290 206 aaKnown RBP12.5□□□□□ -0.41
RFFL-211ENST00000584541 URB1-AS1Q96HZ7 61 aa12.5□□□□□ -0.41
RFFL-211ENST00000584541 CYSLTR1Q9Y271 337 aa12.5□□□□□ -0.41
RFFL-211ENST00000584541 LINC01549A6NIU2 74 aa12.49□□□□□ -0.41
RFFL-211ENST00000584541 DNAH10OSP0CZ25 163 aa12.49□□□□□ -0.41
RFFL-211ENST00000584541 LINC01556Q5JQF7 62 aa12.49□□□□□ -0.41
RFFL-211ENST00000584541 TMEM101Q96IK0 257 aa12.49□□□□□ -0.41
RFFL-211ENST00000584541 TRAV9-2A0A087WT02 112 aa12.48□□□□□ -0.41
RFFL-211ENST00000584541 HSBP1O75506 76 aa12.48□□□□□ -0.41
RFFL-211ENST00000584541 IGHV3-30P01768 117 aa12.48□□□□□ -0.41
RFFL-211ENST00000584541 IGHV3-33P01772 117 aa12.48□□□□□ -0.41
RFFL-211ENST00000584541 IGHV3-30-3P0DP02 117 aa12.48□□□□□ -0.41
RFFL-211ENST00000584541 IGHV3-30-5P0DP03 117 aa12.48□□□□□ -0.41
RFFL-211ENST00000584541 FGF6P10767 208 aa12.48□□□□□ -0.41
RFFL-211ENST00000584541 ZNF25P17030 456 aaPredicted RBP12.48□□□□□ -0.41
RFFL-211ENST00000584541 DGAT2L7PQ6IED9 249 aa12.48□□□□□ -0.41
RFFL-211ENST00000584541 C2orf66Q6UXQ4 117 aa12.48□□□□□ -0.41
RFFL-211ENST00000584541 PLECQ15149 4684 aaKnown RBP12.48□□□□□ -0.41
RFFL-211ENST00000584541 A0A1B0GUV1 79 aa12.47□□□□□ -0.41
RFFL-211ENST00000584541 SERF1AO75920 110 aa12.47□□□□□ -0.41
RFFL-211ENST00000584541 RPL39P62891 51 aaKnown RBP12.47□□□□□ -0.41
RFFL-211ENST00000584541 MPV17L2Q567V2 206 aa12.47□□□□□ -0.41
RFFL-211ENST00000584541 K7EP13 123 aa12.46□□□□□ -0.41
RFFL-211ENST00000584541 NDUFA6P56556 154 aa12.46□□□□□ -0.41
RFFL-211ENST00000584541 RBX1P62877 108 aa12.46□□□□□ -0.41
RFFL-211ENST00000584541 MRPL52Q86TS9 123 aaKnown RBP12.46□□□□□ -0.41
RFFL-211ENST00000584541 C10orf126Q8N4M7 172 aa12.46□□□□□ -0.41
RFFL-211ENST00000584541 OR5A1Q8NGJ0 315 aa12.46□□□□□ -0.41
RFFL-211ENST00000584541 TIMM21Q9BVV7 248 aa12.46□□□□□ -0.41
RFFL-211ENST00000584541 SPANXA1Q9NS26 97 aa12.46□□□□□ -0.41
RFFL-211ENST00000584541 HBDP02042 147 aa12.45□□□□□ -0.42
RFFL-211ENST00000584541 TTC32Q5I0X7 151 aa12.45□□□□□ -0.42
RFFL-211ENST00000584541 Q8N976 141 aa12.45□□□□□ -0.42
RFFL-211ENST00000584541 TOMM6Q96B49 74 aa12.45□□□□□ -0.42
RFFL-211ENST00000584541 UBE2D4Q9Y2X8 147 aa12.45□□□□□ -0.42
RFFL-211ENST00000584541 ANGP03950 147 aaKnown RBP12.44□□□□□ -0.42
RFFL-211ENST00000584541 CSDC2Q9Y534 153 aaKnown RBP12.44□□□□□ -0.42
RFFL-211ENST00000584541 LCE6AA0A183 80 aa12.43□□□□□ -0.42
RFFL-211ENST00000584541 PMCHL1Q16048 86 aa12.43□□□□□ -0.42
RFFL-211ENST00000584541 Q8N3U1 123 aa12.43□□□□□ -0.42
RFFL-211ENST00000584541 PYGO1Q9Y3Y4 419 aa12.43□□□□□ -0.42
RFFL-211ENST00000584541 IGLV4-60A0A075B6I1 120 aa12.42□□□□□ -0.42
RFFL-211ENST00000584541 S100A6P06703 90 aa12.42□□□□□ -0.42
RFFL-211ENST00000584541 LINC00310P59036 64 aa12.42□□□□□ -0.42
RFFL-211ENST00000584541 COA6Q5JTJ3 125 aaKnown RBP12.42□□□□□ -0.42
RFFL-211ENST00000584541 SCGB3A1Q96QR1 104 aa12.42□□□□□ -0.42
RFFL-211ENST00000584541 KLK12Q9UKR0 248 aa12.42□□□□□ -0.42
RFFL-211ENST00000584541 NBDYA0A0U1RRE5 68 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms