RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 LSM10Q969L4 123 aaKnown RBP0.1□□□□□ -2.39
SMCHD1-209ENST00000583441 PPP3R2Q96LZ3 170 aa0.1□□□□□ -2.39
SMCHD1-209ENST00000583441 ANK2Q01484 3957 aa0.1□□□□□ -2.39
SMCHD1-209ENST00000583441 SIPA1L3O60292 1781 aaPredicted RBP0.09□□□□□ -2.39
SMCHD1-209ENST00000583441 IGSF10Q6WRI0 2623 aa0.09□□□□□ -2.39
SMCHD1-209ENST00000583441 DOCK11Q5JSL3 2073 aa0.09□□□□□ -2.39
SMCHD1-209ENST00000583441 LRP1Q07954 4544 aaKnown RBP0.09□□□□□ -2.39
SMCHD1-209ENST00000583441 TTC9CQ8N5M4 171 aa0.09□□□□□ -2.4
SMCHD1-209ENST00000583441 NPVFQ9HCQ7 196 aa0.09□□□□□ -2.4
SMCHD1-209ENST00000583441 MACF1Q9UPN3 7388 aaKnown RBP0.09□□□□□ -2.4
SMCHD1-209ENST00000583441 CHD9Q3L8U1 2897 aa0.08□□□□□ -2.4
SMCHD1-209ENST00000583441 M0R135 149 aa0.08□□□□□ -2.4
SMCHD1-209ENST00000583441 IFITM1P13164 125 aa0.08□□□□□ -2.4
SMCHD1-209ENST00000583441 S100A3P33764 101 aa0.08□□□□□ -2.4
SMCHD1-209ENST00000583441 SPAG11BQ08648 103 aa0.08□□□□□ -2.4
SMCHD1-209ENST00000583441 SPAG11AQ6PDA7 123 aa0.08□□□□□ -2.4
SMCHD1-209ENST00000583441 ZNF436-AS1Q8NC38 126 aaPredicted RBP0.08□□□□□ -2.4
SMCHD1-209ENST00000583441 SCN3BQ9NY72 215 aa0.08□□□□□ -2.4
SMCHD1-209ENST00000583441 HRNRQ86YZ3 2850 aaPredicted RBP0.08□□□□□ -2.4
SMCHD1-209ENST00000583441 ANKRD17O75179 2603 aaKnown RBP0.08□□□□□ -2.4
SMCHD1-209ENST00000583441 UNC79Q9P2D8 2635 aa0.08□□□□□ -2.4
SMCHD1-209ENST00000583441 NCOR2Q9Y618 2525 aa0.08□□□□□ -2.4
SMCHD1-209ENST00000583441 PPIP5K1Q6PFW1 1433 aa0.07□□□□□ -2.4
SMCHD1-209ENST00000583441 IGF2RP11717 2491 aa0.06□□□□□ -2.4
SMCHD1-209ENST00000583441 CTXND1A0A1B0GTU2 59 aa0.06□□□□□ -2.4
SMCHD1-209ENST00000583441 APOC2P02655 101 aa0.06□□□□□ -2.4
SMCHD1-209ENST00000583441 C8orf59Q8N0T1 100 aaPredicted RBP0.06□□□□□ -2.4
SMCHD1-209ENST00000583441 PRO0255Q9UI72 69 aa0.06□□□□□ -2.4
SMCHD1-209ENST00000583441 SPCS1Q9Y6A9 102 aa0.06□□□□□ -2.4
SMCHD1-209ENST00000583441 SSPOA2VEC9 5147 aa0.06□□□□□ -2.4
SMCHD1-209ENST00000583441 ARFGEF1Q9Y6D6 1849 aa0.06□□□□□ -2.4
SMCHD1-209ENST00000583441 CFDP00746 253 aaPredicted RBP0.05□□□□□ -2.4
SMCHD1-209ENST00000583441 IFNGP01579 166 aa0.05□□□□□ -2.4
SMCHD1-209ENST00000583441 COX17Q14061 63 aa0.05□□□□□ -2.4
SMCHD1-209ENST00000583441 V9GYH0 126 aa0.05□□□□□ -2.4
SMCHD1-209ENST00000583441 F8P00451 2351 aa0.05□□□□□ -2.4
SMCHD1-209ENST00000583441 CACNA1CQ13936 2221 aa0.05□□□□□ -2.4
SMCHD1-209ENST00000583441 NWD2Q9ULI1 1742 aa0.04□□□□□ -2.4
SMCHD1-209ENST00000583441 COL7A1Q02388 2944 aa0.04□□□□□ -2.4
SMCHD1-209ENST00000583441 MRC1P22897 1456 aa0.04□□□□□ -2.4
SMCHD1-209ENST00000583441 SPANXDQ9BXN6 97 aa0.04□□□□□ -2.4
SMCHD1-209ENST00000583441 SPRR2GQ9BYE4 73 aa0.04□□□□□ -2.4
SMCHD1-209ENST00000583441 IFT172Q9UG01 1749 aa0.04□□□□□ -2.4
SMCHD1-209ENST00000583441 EFCAB10A6NFE3 127 aa0.03□□□□□ -2.4
SMCHD1-209ENST00000583441 C10orf142B7Z368 130 aa0.03□□□□□ -2.4
SMCHD1-209ENST00000583441 SSSCA1O60232 199 aa0.03□□□□□ -2.4
SMCHD1-209ENST00000583441 MGST2Q99735 147 aa0.03□□□□□ -2.4
SMCHD1-209ENST00000583441 DMBT1Q9UGM3 2413 aaPredicted RBP0.03□□□□□ -2.41
SMCHD1-209ENST00000583441 SPEF2Q9C093 1822 aa0.02□□□□□ -2.41
SMCHD1-209ENST00000583441 TRAV22A0A0B4J277 110 aa0.02□□□□□ -2.41
SMCHD1-209ENST00000583441 MIF4GDA9UHW6 222 aaKnown RBP0.02□□□□□ -2.41
SMCHD1-209ENST00000583441 M0R3E3 92 aa0.02□□□□□ -2.41
SMCHD1-209ENST00000583441 AKAIN1P0CW23 69 aa0.02□□□□□ -2.41
SMCHD1-209ENST00000583441 TPPP2P59282 170 aa0.02□□□□□ -2.41
SMCHD1-209ENST00000583441 AMELXQ99217 191 aa0.02□□□□□ -2.41
SMCHD1-209ENST00000583441 DYNLRB1Q9NP97 96 aa0.02□□□□□ -2.41
SMCHD1-209ENST00000583441 HIVEP3Q5T1R4 2406 aa0.02□□□□□ -2.41
SMCHD1-209ENST00000583441 TRBV7-3A0A075B6L6 115 aa0.01□□□□□ -2.41
SMCHD1-209ENST00000583441 LOC285095A0A1B0GVY8 99 aa0.01□□□□□ -2.41
SMCHD1-209ENST00000583441 UQCR11O14957 56 aa0.01□□□□□ -2.41
SMCHD1-209ENST00000583441 HAMPP81172 84 aa0.01□□□□□ -2.41
SMCHD1-209ENST00000583441 CATR1Q13166 79 aa0.01□□□□□ -2.41
SMCHD1-209ENST00000583441 WFDC2Q14508 124 aa0.01□□□□□ -2.41
SMCHD1-209ENST00000583441 TMEM170BQ5T4T1 132 aa0.01□□□□□ -2.41
SMCHD1-209ENST00000583441 BAGE2Q86Y30 109 aa0.01□□□□□ -2.41
SMCHD1-209ENST00000583441 PP6455Q8WZ26 134 aa0.01□□□□□ -2.41
SMCHD1-209ENST00000583441 NDUFA4L2Q9NRX3 87 aa0.01□□□□□ -2.41
SMCHD1-209ENST00000583441 MBD5Q9P267 1494 aa0.01□□□□□ -2.41
SMCHD1-209ENST00000583441 ASXL3Q9C0F0 2248 aa0.01□□□□□ -2.41
SMCHD1-209ENST00000583441 F8VRH5 84 aa0□□□□□ -2.41
SMCHD1-209ENST00000583441 APOC3P02656 99 aa0□□□□□ -2.41
SMCHD1-209ENST00000583441 RPL13AP3Q6NVV1 102 aa0□□□□□ -2.41
SMCHD1-209ENST00000583441 COMMD6Q7Z4G1 85 aa0□□□□□ -2.41
SMCHD1-209ENST00000583441 C5orf38Q86SI9 138 aa0□□□□□ -2.41
SMCHD1-209ENST00000583441 BCL9LQ86UU0 1499 aa0□□□□□ -2.41
SMCHD1-209ENST00000583441 BIVM-ERCC5R4GMW8 1640 aa-0.01□□□□□ -2.41
SMCHD1-209ENST00000583441 CPSF1Q10570 1443 aaKnown RBP-0.01□□□□□ -2.41
SMCHD1-209ENST00000583441 KTN1Q86UP2 1357 aaKnown RBP-0.01□□□□□ -2.41
SMCHD1-209ENST00000583441 LOC100130705A0A1B0GUX0 176 aa-0.01□□□□□ -2.41
SMCHD1-209ENST00000583441 Q8IZM0 81 aa-0.01□□□□□ -2.41
SMCHD1-209ENST00000583441 ARAP2Q8WZ64 1704 aa-0.01□□□□□ -2.41
SMCHD1-209ENST00000583441 BCE1O60756 84 aa-0.02□□□□□ -2.41
SMCHD1-209ENST00000583441 TNFP01375 233 aa-0.02□□□□□ -2.41
SMCHD1-209ENST00000583441 Q5VSD8 79 aa-0.02□□□□□ -2.41
SMCHD1-209ENST00000583441 MYOZ3Q8TDC0 251 aa-0.02□□□□□ -2.41
SMCHD1-209ENST00000583441 FAM208BQ5VWN6 2430 aa-0.02□□□□□ -2.41
SMCHD1-209ENST00000583441 LRRC37A2A6NM11 1700 aa-0.02□□□□□ -2.41
SMCHD1-209ENST00000583441 NHSL1Q5SYE7 1610 aa-0.02□□□□□ -2.41
SMCHD1-209ENST00000583441 CELSR1Q9NYQ6 3014 aa-0.03□□□□□ -2.41
SMCHD1-209ENST00000583441 ROCK2O75116 1388 aaKnown RBP-0.03□□□□□ -2.41
SMCHD1-209ENST00000583441 PRDM2Q13029 1718 aa-0.03□□□□□ -2.41
SMCHD1-209ENST00000583441 LINC01558Q9Y6Z2 57 aa-0.03□□□□□ -2.41
SMCHD1-209ENST00000583441 AHCTF1Q8WYP5 2266 aa-0.04□□□□□ -2.42
SMCHD1-209ENST00000583441 IGLC7A0M8Q6 106 aa-0.04□□□□□ -2.42
SMCHD1-209ENST00000583441 SARNPP82979 210 aaKnown RBP-0.04□□□□□ -2.42
SMCHD1-209ENST00000583441 MRPL54Q6P161 138 aaKnown RBP-0.04□□□□□ -2.42
SMCHD1-209ENST00000583441 LINC00472Q9H8W2 130 aa-0.04□□□□□ -2.42
SMCHD1-209ENST00000583441 A2ML1A8K2U0 1454 aa-0.04□□□□□ -2.42
SMCHD1-209ENST00000583441 ERCC6L2Q5T890 1561 aa-0.05□□□□□ -2.42
SMCHD1-209ENST00000583441 DCDP81605 110 aaKnown RBP-0.05□□□□□ -2.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms