RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 SPAARA0A1B0GVQ0 90 aa-0.08□□□□□ -2.42
SMCHD1-204ENST00000581226 HCG22E2RYF7 251 aa-0.08□□□□□ -2.42
SMCHD1-204ENST00000581226 S100A12P80511 92 aa-0.08□□□□□ -2.42
SMCHD1-204ENST00000581226 PAIP2BQ9ULR5 123 aaKnown RBP-0.08□□□□□ -2.42
SMCHD1-204ENST00000581226 HMCN2Q8NDA2 5059 aa-0.08□□□□□ -2.42
SMCHD1-204ENST00000581226 FLNCQ14315 2725 aa-0.08□□□□□ -2.42
SMCHD1-204ENST00000581226 PKD1L1Q8TDX9 2849 aa-0.09□□□□□ -2.42
SMCHD1-204ENST00000581226 AKAP6Q13023 2319 aa-0.09□□□□□ -2.42
SMCHD1-204ENST00000581226 FAM92AA1XBS5 289 aa-0.09□□□□□ -2.42
SMCHD1-204ENST00000581226 ZNF815PA8K554 130 aa-0.09□□□□□ -2.42
SMCHD1-204ENST00000581226 SIX6O95475 246 aa-0.09□□□□□ -2.42
SMCHD1-204ENST00000581226 SPINK1P00995 79 aa-0.09□□□□□ -2.42
SMCHD1-204ENST00000581226 CCL18P55774 89 aa-0.09□□□□□ -2.42
SMCHD1-204ENST00000581226 RBM3P98179 157 aaKnown RBP-0.09□□□□□ -2.42
SMCHD1-204ENST00000581226 PDCD10Q9BUL8 212 aa-0.09□□□□□ -2.42
SMCHD1-204ENST00000581226 VWFP04275 2813 aa-0.09□□□□□ -2.42
SMCHD1-204ENST00000581226 QRICH2Q9H0J4 1663 aa-0.09□□□□□ -2.42
SMCHD1-204ENST00000581226 MRC1P22897 1456 aa-0.1□□□□□ -2.42
SMCHD1-204ENST00000581226 PSME4Q14997 1843 aa-0.1□□□□□ -2.43
SMCHD1-204ENST00000581226 LOC100130705A0A1B0GUX0 176 aa-0.1□□□□□ -2.43
SMCHD1-204ENST00000581226 K7EP13 123 aa-0.1□□□□□ -2.43
SMCHD1-204ENST00000581226 ROBO1Q9Y6N7 1651 aa-0.11□□□□□ -2.43
SMCHD1-204ENST00000581226 SHROOM2Q13796 1616 aa-0.11□□□□□ -2.43
SMCHD1-204ENST00000581226 BIVM-ERCC5R4GMW8 1640 aa-0.11□□□□□ -2.43
SMCHD1-204ENST00000581226 SELENOWP63302 87 aa-0.11□□□□□ -2.43
SMCHD1-204ENST00000581226 CCDC58Q4VC31 144 aa-0.11□□□□□ -2.43
SMCHD1-204ENST00000581226 Q6AWC8 147 aa-0.11□□□□□ -2.43
SMCHD1-204ENST00000581226 ARL11Q969Q4 196 aa-0.11□□□□□ -2.43
SMCHD1-204ENST00000581226 SNRNP25Q9BV90 132 aaKnown RBP-0.11□□□□□ -2.43
SMCHD1-204ENST00000581226 SCP2D1Q9UJQ7 156 aa-0.11□□□□□ -2.43
SMCHD1-204ENST00000581226 FSIP2Q5CZC0 6907 aa-0.11□□□□□ -2.43
SMCHD1-204ENST00000581226 HUWE1Q7Z6Z7 4374 aaKnown RBP-0.11□□□□□ -2.43
SMCHD1-204ENST00000581226 UBE2DNLQ8IWF7 75 aa-0.12□□□□□ -2.43
SMCHD1-204ENST00000581226 FAM107BQ9H098 131 aa-0.12□□□□□ -2.43
SMCHD1-204ENST00000581226 RERGLQ9H628 205 aa-0.12□□□□□ -2.43
SMCHD1-204ENST00000581226 BCL9LQ86UU0 1499 aa-0.12□□□□□ -2.43
SMCHD1-204ENST00000581226 TRAV13-2A0A0B4J235 113 aa-0.13□□□□□ -2.43
SMCHD1-204ENST00000581226 HMGN1P05114 100 aa-0.13□□□□□ -2.43
SMCHD1-204ENST00000581226 MEIG1Q5JSS6 88 aa-0.13□□□□□ -2.43
SMCHD1-204ENST00000581226 BAGE3Q86Y29 109 aa-0.13□□□□□ -2.43
SMCHD1-204ENST00000581226 SERP1Q9Y6X1 66 aa-0.13□□□□□ -2.43
SMCHD1-204ENST00000581226 DOPEY2Q9Y3R5 2298 aa-0.13□□□□□ -2.43
SMCHD1-204ENST00000581226 MYCBP2O75592 4640 aa-0.14□□□□□ -2.43
SMCHD1-204ENST00000581226 CFAP126Q5VTH2 177 aa-0.14□□□□□ -2.43
SMCHD1-204ENST00000581226 KMT2AQ03164 3969 aa-0.14□□□□□ -2.43
SMCHD1-204ENST00000581226 PIEZO2Q9H5I5 2752 aa-0.14□□□□□ -2.43
SMCHD1-204ENST00000581226 USF3Q68DE3 2245 aa-0.14□□□□□ -2.43
SMCHD1-204ENST00000581226 GVINP1Q7Z2Y8 2422 aa-0.15□□□□□ -2.43
SMCHD1-204ENST00000581226 NSD1Q96L73 2696 aaPredicted RBP-0.15□□□□□ -2.43
SMCHD1-204ENST00000581226 PPP1R17O96001 155 aa-0.15□□□□□ -2.43
SMCHD1-204ENST00000581226 FAM213BQ8TBF2 198 aa-0.15□□□□□ -2.43
SMCHD1-204ENST00000581226 CYP4F30PQ9H0H9 118 aa-0.15□□□□□ -2.43
SMCHD1-204ENST00000581226 U3KQA8 63 aa-0.15□□□□□ -2.43
SMCHD1-204ENST00000581226 LRP6O75581 1613 aa-0.16□□□□□ -2.43
SMCHD1-204ENST00000581226 BTG2P78543 158 aa-0.16□□□□□ -2.44
SMCHD1-204ENST00000581226 SPTBN1Q01082 2364 aaKnown RBP-0.16□□□□□ -2.44
SMCHD1-204ENST00000581226 PKDREJQ9NTG1 2253 aa-0.16□□□□□ -2.44
SMCHD1-204ENST00000581226 SBF2Q86WG5 1849 aa-0.17□□□□□ -2.44
SMCHD1-204ENST00000581226 MYO7BQ6PIF6 2116 aa-0.17□□□□□ -2.44
SMCHD1-204ENST00000581226 M0R135 149 aa-0.17□□□□□ -2.44
SMCHD1-204ENST00000581226 C10orf128Q5T292 105 aa-0.17□□□□□ -2.44
SMCHD1-204ENST00000581226 ZNF436-AS1Q8NC38 126 aaPredicted RBP-0.17□□□□□ -2.44
SMCHD1-204ENST00000581226 AMELXQ99217 191 aa-0.17□□□□□ -2.44
SMCHD1-204ENST00000581226 CUL7Q14999 1698 aa-0.18□□□□□ -2.44
SMCHD1-204ENST00000581226 KIF21AQ7Z4S6 1674 aa-0.18□□□□□ -2.44
SMCHD1-204ENST00000581226 PPIP5K1Q6PFW1 1433 aa-0.18□□□□□ -2.44
SMCHD1-204ENST00000581226 PIN1P1O15428 100 aa-0.18□□□□□ -2.44
SMCHD1-204ENST00000581226 TTC9CQ8N5M4 171 aa-0.18□□□□□ -2.44
SMCHD1-204ENST00000581226 CNFNQ9BYD5 112 aa-0.18□□□□□ -2.44
SMCHD1-204ENST00000581226 LINC00472Q9H8W2 130 aa-0.18□□□□□ -2.44
SMCHD1-204ENST00000581226 LRRC37A2A6NM11 1700 aa-0.18□□□□□ -2.44
SMCHD1-204ENST00000581226 NALCNQ8IZF0 1738 aa-0.18□□□□□ -2.44
SMCHD1-204ENST00000581226 TNXBP22105 4242 aa-0.19□□□□□ -2.44
SMCHD1-204ENST00000581226 ZNF609O15014 1411 aa-0.19□□□□□ -2.44
SMCHD1-204ENST00000581226 FAT2Q9NYQ8 4349 aa-0.19□□□□□ -2.44
SMCHD1-204ENST00000581226 FAM25AB3EWG3 89 aa-0.19□□□□□ -2.44
SMCHD1-204ENST00000581226 FAM25CB3EWG5 89 aa-0.19□□□□□ -2.44
SMCHD1-204ENST00000581226 FAM25GB3EWG6 89 aa-0.19□□□□□ -2.44
SMCHD1-204ENST00000581226 SPINK8P0C7L1 97 aa-0.19□□□□□ -2.44
SMCHD1-204ENST00000581226 C12orf73Q69YU5 71 aa-0.19□□□□□ -2.44
SMCHD1-204ENST00000581226 TSLPQ969D9 159 aa-0.19□□□□□ -2.44
SMCHD1-204ENST00000581226 NAA60Q9H7X0 242 aa-0.19□□□□□ -2.44
SMCHD1-204ENST00000581226 SCN3BQ9NY72 215 aa-0.19□□□□□ -2.44
SMCHD1-204ENST00000581226 LENEPQ9Y5L5 61 aa-0.19□□□□□ -2.44
SMCHD1-204ENST00000581226 RIMS1Q86UR5 1692 aaKnown RBP-0.19□□□□□ -2.44
SMCHD1-204ENST00000581226 TCHHQ07283 1943 aa-0.19□□□□□ -2.44
SMCHD1-204ENST00000581226 NHSL1Q5SYE7 1610 aa-0.2□□□□□ -2.44
SMCHD1-204ENST00000581226 ZFHX3Q15911 3703 aa-0.2□□□□□ -2.44
SMCHD1-204ENST00000581226 TSC22D3Q99576 134 aa-0.2□□□□□ -2.44
SMCHD1-204ENST00000581226 PRO0255Q9UI72 69 aa-0.2□□□□□ -2.44
SMCHD1-204ENST00000581226 R4GMQ9 66 aa-0.2□□□□□ -2.44
SMCHD1-204ENST00000581226 BTAF1O14981 1849 aa-0.2□□□□□ -2.44
SMCHD1-204ENST00000581226 CPSF1Q10570 1443 aaKnown RBP-0.21□□□□□ -2.44
SMCHD1-204ENST00000581226 PTPN13Q12923 2485 aa-0.21□□□□□ -2.44
SMCHD1-204ENST00000581226 BCE1O60756 84 aa-0.21□□□□□ -2.44
SMCHD1-204ENST00000581226 SPAG11BQ08648 103 aa-0.21□□□□□ -2.44
SMCHD1-204ENST00000581226 Q56UQ5 140 aa-0.21□□□□□ -2.44
SMCHD1-204ENST00000581226 SPAG11AQ6PDA7 123 aa-0.21□□□□□ -2.44
SMCHD1-204ENST00000581226 COPS9Q8WXC6 57 aa-0.21□□□□□ -2.44
SMCHD1-204ENST00000581226 AQP10Q96PS8 301 aa-0.21□□□□□ -2.44
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms