RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 FASNP49327 2511 aaKnown RBP-1.1□□□□□ -2.59
SS18-214ENST00000580003 MYH9P35579 1960 aaKnown RBP-1.1□□□□□ -2.59
SS18-214ENST00000580003 C2CD3Q4AC94 2353 aa-1.11□□□□□ -2.59
SS18-214ENST00000580003 ANK3Q12955 4377 aaKnown RBP-1.11□□□□□ -2.59
SS18-214ENST00000580003 VPS13DQ5THJ4 4388 aa-1.11□□□□□ -2.59
SS18-214ENST00000580003 ZNF609O15014 1411 aa-1.11□□□□□ -2.59
SS18-214ENST00000580003 ANKRD11Q6UB99 2663 aaPredicted RBP-1.11□□□□□ -2.59
SS18-214ENST00000580003 DYNC1H1Q14204 4646 aaKnown RBP-1.11□□□□□ -2.59
SS18-214ENST00000580003 PPRC1Q5VV67 1664 aaKnown RBP-1.11□□□□□ -2.59
SS18-214ENST00000580003 NBEAL2Q6ZNJ1 2754 aa-1.11□□□□□ -2.59
SS18-214ENST00000580003 USP9XQ93008 2570 aaPredicted RBP-1.11□□□□□ -2.59
SS18-214ENST00000580003 APOC4-APOC2K7ER74 178 aa-1.12□□□□□ -2.59
SS18-214ENST00000580003 NPFFO15130 113 aa-1.12□□□□□ -2.59
SS18-214ENST00000580003 S100A3P33764 101 aa-1.12□□□□□ -2.59
SS18-214ENST00000580003 SPRR2AP35326 72 aa-1.12□□□□□ -2.59
SS18-214ENST00000580003 C9orf116Q5BN46 136 aaPredicted RBP-1.12□□□□□ -2.59
SS18-214ENST00000580003 BAGE3Q86Y29 109 aa-1.12□□□□□ -2.59
SS18-214ENST00000580003 ERCC6Q03468 1493 aa-1.12□□□□□ -2.59
SS18-214ENST00000580003 XIRP1Q702N8 1843 aaKnown RBP-1.12□□□□□ -2.59
SS18-214ENST00000580003 CTAGE3PQ8IX95 158 aa-1.13□□□□□ -2.59
SS18-214ENST00000580003 PARP14Q460N5 1801 aa-1.13□□□□□ -2.59
SS18-214ENST00000580003 CHD8Q9HCK8 2581 aa-1.13□□□□□ -2.59
SS18-214ENST00000580003 PIEZO2Q9H5I5 2752 aa-1.14□□□□□ -2.59
SS18-214ENST00000580003 FAM92AA1XBS5 289 aa-1.14□□□□□ -2.59
SS18-214ENST00000580003 UBE2D1P51668 147 aa-1.14□□□□□ -2.59
SS18-214ENST00000580003 ANKHD1Q8IWZ3 2542 aaKnown RBP-1.14□□□□□ -2.59
SS18-214ENST00000580003 HTTP42858 3142 aa-1.15□□□□□ -2.59
SS18-214ENST00000580003 PIRTP0C851 137 aa-1.15□□□□□ -2.59
SS18-214ENST00000580003 CUBNO60494 3623 aa-1.15□□□□□ -2.59
SS18-214ENST00000580003 ZMYM4Q5VZL5 1548 aa-1.15□□□□□ -2.59
SS18-214ENST00000580003 DAPK1P53355 1430 aa-1.15□□□□□ -2.59
SS18-214ENST00000580003 PKD1P98161 4303 aa-1.16□□□□□ -2.59
SS18-214ENST00000580003 KRTAP20-1Q3LI63 56 aa-1.16□□□□□ -2.6
SS18-214ENST00000580003 MORN2Q502X0 79 aa-1.16□□□□□ -2.6
SS18-214ENST00000580003 ZNF818PQ6ZRF7 136 aa-1.16□□□□□ -2.6
SS18-214ENST00000580003 TEX15Q9BXT5 2789 aa-1.16□□□□□ -2.6
SS18-214ENST00000580003 SIPA1L3O60292 1781 aaPredicted RBP-1.16□□□□□ -2.6
SS18-214ENST00000580003 MAP1BP46821 2468 aaKnown RBP-1.16□□□□□ -2.6
SS18-214ENST00000580003 H0YJX3 145 aa-1.17□□□□□ -2.6
SS18-214ENST00000580003 KLK9Q2XQG4 91 aa-1.17□□□□□ -2.6
SS18-214ENST00000580003 CFAP126Q5VTH2 177 aa-1.17□□□□□ -2.6
SS18-214ENST00000580003 NPVFQ9HCQ7 196 aa-1.17□□□□□ -2.6
SS18-214ENST00000580003 SCN3BQ9NY72 215 aa-1.17□□□□□ -2.6
SS18-214ENST00000580003 AKAP13Q12802 2813 aa-1.17□□□□□ -2.6
SS18-214ENST00000580003 WNK1Q9H4A3 2382 aa-1.18□□□□□ -2.6
SS18-214ENST00000580003 APOBP04114 4563 aaKnown RBP-1.18□□□□□ -2.6
SS18-214ENST00000580003 SPRR2FQ96RM1 72 aa-1.18□□□□□ -2.6
SS18-214ENST00000580003 SELENOSQ9BQE4 189 aa-1.18□□□□□ -2.6
SS18-214ENST00000580003 LAMC1P11047 1609 aa-1.18□□□□□ -2.6
SS18-214ENST00000580003 PIPP12273 146 aaPredicted RBP-1.19□□□□□ -2.6
SS18-214ENST00000580003 S100A5P33763 92 aa-1.19□□□□□ -2.6
SS18-214ENST00000580003 C10orf82Q8WW14 230 aa-1.19□□□□□ -2.6
SS18-214ENST00000580003 LRRC37A3O60309 1634 aa-1.19□□□□□ -2.6
SS18-214ENST00000580003 ITPR1Q14643 2758 aa-1.19□□□□□ -2.6
SS18-214ENST00000580003 CLPSL1A2RUU4 121 aa-1.2□□□□□ -2.6
SS18-214ENST00000580003 NBEAP1P0C6P0 100 aa-1.2□□□□□ -2.6
SS18-214ENST00000580003 DCDP81605 110 aaKnown RBP-1.2□□□□□ -2.6
SS18-214ENST00000580003 SRCAPQ6ZRS2 3230 aa-1.2□□□□□ -2.6
SS18-214ENST00000580003 SACSQ9NZJ4 4579 aa-1.2□□□□□ -2.6
SS18-214ENST00000580003 A0A0C4DFX4 3053 aa-1.21□□□□□ -2.6
SS18-214ENST00000580003 NBEAQ8NFP9 2946 aa-1.21□□□□□ -2.6
SS18-214ENST00000580003 ATRQ13535 2644 aa-1.21□□□□□ -2.6
SS18-214ENST00000580003 GNG14A0A1W2PPG7 69 aa-1.21□□□□□ -2.6
SS18-214ENST00000580003 MIC13Q5XKP0 118 aa-1.21□□□□□ -2.6
SS18-214ENST00000580003 BCL9LQ86UU0 1499 aa-1.21□□□□□ -2.6
SS18-214ENST00000580003 OVOS2A0A0J9YW53 1432 aa-1.22□□□□□ -2.6
SS18-214ENST00000580003 OVOS2Q6IE36 1432 aa-1.22□□□□□ -2.6
SS18-214ENST00000580003 PI4KAP42356 2102 aa-1.22□□□□□ -2.6
SS18-214ENST00000580003 CNOT1A5YKK6 2376 aaKnown RBP-1.22□□□□□ -2.6
SS18-214ENST00000580003 SPTBN1Q01082 2364 aaKnown RBP-1.22□□□□□ -2.6
SS18-214ENST00000580003 UBE2G1P62253 170 aa-1.22□□□□□ -2.6
SS18-214ENST00000580003 PSMG3Q9BT73 122 aaPredicted RBP-1.22□□□□□ -2.6
SS18-214ENST00000580003 MRPL40Q9NQ50 206 aaKnown RBP-1.22□□□□□ -2.6
SS18-214ENST00000580003 CHD7Q9P2D1 2997 aa-1.22□□□□□ -2.6
SS18-214ENST00000580003 TMEM2Q9UHN6 1383 aa-1.22□□□□□ -2.61
SS18-214ENST00000580003 IFT172Q9UG01 1749 aa-1.23□□□□□ -2.61
SS18-214ENST00000580003 ARFGEF1Q9Y6D6 1849 aa-1.23□□□□□ -2.61
SS18-214ENST00000580003 NEFHP12036 1026 aa-1.23□□□□□ -2.61
SS18-214ENST00000580003 CBLN1P23435 193 aa-1.23□□□□□ -2.61
SS18-214ENST00000580003 ITPR2Q14571 2701 aa-1.23□□□□□ -2.61
SS18-214ENST00000580003 CMYA5Q8N3K9 4069 aa-1.24□□□□□ -2.61
SS18-214ENST00000580003 PCNX1Q96RV3 2341 aa-1.24□□□□□ -2.61
SS18-214ENST00000580003 PRKDCP78527 4128 aaKnown RBP-1.24□□□□□ -2.61
SS18-214ENST00000580003 SMIM4Q8WVI0 70 aa-1.24□□□□□ -2.61
SS18-214ENST00000580003 EYSQ5T1H1 3165 aa-1.24□□□□□ -2.61
SS18-214ENST00000580003 ARHGEF10O15013 1369 aa-1.24□□□□□ -2.61
SS18-214ENST00000580003 DISP2A7MBM2 1401 aa-1.24□□□□□ -2.61
SS18-214ENST00000580003 C10orf71Q711Q0 1435 aa-1.24□□□□□ -2.61
SS18-214ENST00000580003 PLCE1Q9P212 2302 aa-1.24□□□□□ -2.61
SS18-214ENST00000580003 VPS13BQ7Z7G8 4022 aa-1.24□□□□□ -2.61
SS18-214ENST00000580003 MUC22E2RYF6 1773 aaPredicted RBP-1.25□□□□□ -2.61
SS18-214ENST00000580003 J3QR89 54 aa-1.25□□□□□ -2.61
SS18-214ENST00000580003 IL5P05113 134 aa-1.25□□□□□ -2.61
SS18-214ENST00000580003 HIST1H1AQ02539 215 aaPredicted RBP-1.25□□□□□ -2.61
SS18-214ENST00000580003 TP53AIP1Q9HCN2 124 aa-1.25□□□□□ -2.61
SS18-214ENST00000580003 MTORP42345 2549 aa-1.25□□□□□ -2.61
SS18-214ENST00000580003 DNAH1Q9P2D7 4330 aa-1.25□□□□□ -2.61
SS18-214ENST00000580003 BCE1O60756 84 aa-1.26□□□□□ -2.61
SS18-214ENST00000580003 NCR2O95944 276 aa-1.26□□□□□ -2.61
SS18-214ENST00000580003 AIF1LQ9BQI0 150 aa-1.26□□□□□ -2.61
Retrieved 100 of 20,778 RNA–protein pairs in 93.8 ms