RNA–Protein interactions for RNA: ENST00000577300.1

SMCHD1-202, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 506 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-202ENST00000577300 SLX4Q8IY92 1834 aa1.91□□□□□ -2.1
SMCHD1-202ENST00000577300 C4AP0C0L4 1744 aa1.91□□□□□ -2.1
SMCHD1-202ENST00000577300 C4BP0C0L5 1744 aa1.91□□□□□ -2.1
SMCHD1-202ENST00000577300 DEPDC5O75140 1603 aa1.91□□□□□ -2.1
SMCHD1-202ENST00000577300 TANC2Q9HCD6 1990 aa1.9□□□□□ -2.1
SMCHD1-202ENST00000577300 CPAMD8Q8IZJ3 1885 aa1.9□□□□□ -2.1
SMCHD1-202ENST00000577300 LOC285556D6RIA3 1793 aa1.9□□□□□ -2.1
SMCHD1-202ENST00000577300 RREB1Q92766 1687 aa1.9□□□□□ -2.1
SMCHD1-202ENST00000577300 hDV103S1A0JD37 113 aa1.9□□□□□ -2.11
SMCHD1-202ENST00000577300 TMEM223A0PJW6 202 aa1.9□□□□□ -2.11
SMCHD1-202ENST00000577300 C5orf67F2Z3F1 127 aa1.9□□□□□ -2.11
SMCHD1-202ENST00000577300 C19orf84I3L1E1 186 aa1.9□□□□□ -2.11
SMCHD1-202ENST00000577300 IFI6P09912 130 aa1.9□□□□□ -2.11
SMCHD1-202ENST00000577300 TLX1NBP0CAT3 122 aa1.9□□□□□ -2.11
SMCHD1-202ENST00000577300 CGB3P0DN86 165 aa1.9□□□□□ -2.11
SMCHD1-202ENST00000577300 CGB7P0DN87 165 aa1.9□□□□□ -2.11
SMCHD1-202ENST00000577300 CCL3P10147 92 aa1.9□□□□□ -2.11
SMCHD1-202ENST00000577300 Q5VV11 94 aa1.9□□□□□ -2.11
SMCHD1-202ENST00000577300 Q8IYB0 196 aa1.9□□□□□ -2.11
SMCHD1-202ENST00000577300 CLECL1Q8IZS7 167 aa1.9□□□□□ -2.11
SMCHD1-202ENST00000577300 PFN4Q8NHR9 129 aa1.9□□□□□ -2.11
SMCHD1-202ENST00000577300 KLF14Q8TD94 323 aaPredicted RBP1.9□□□□□ -2.11
SMCHD1-202ENST00000577300 TAC3Q9UHF0 121 aa1.9□□□□□ -2.11
SMCHD1-202ENST00000577300 NINQ8N4C6 2090 aa1.9□□□□□ -2.11
SMCHD1-202ENST00000577300 MAST2Q6P0Q8 1798 aa1.9□□□□□ -2.11
SMCHD1-202ENST00000577300 C3P01024 1663 aa1.9□□□□□ -2.11
SMCHD1-202ENST00000577300 ADAMTS7Q9UKP4 1686 aa1.9□□□□□ -2.11
SMCHD1-202ENST00000577300 OBSL1O75147 1896 aa1.89□□□□□ -2.11
SMCHD1-202ENST00000577300 NYNRINQ9P2P1 1898 aaKnown RBP1.89□□□□□ -2.11
SMCHD1-202ENST00000577300 A0A1B0GW54 56 aa1.89□□□□□ -2.11
SMCHD1-202ENST00000577300 SPINK4O60575 86 aa1.89□□□□□ -2.11
SMCHD1-202ENST00000577300 FCER1GP30273 86 aa1.89□□□□□ -2.11
SMCHD1-202ENST00000577300 SPINT3P49223 89 aa1.89□□□□□ -2.11
SMCHD1-202ENST00000577300 FXYD6P3P58550 94 aa1.89□□□□□ -2.11
SMCHD1-202ENST00000577300 TSPEAR-AS2P59090 65 aa1.89□□□□□ -2.11
SMCHD1-202ENST00000577300 SERF2P84101 59 aa1.89□□□□□ -2.11
SMCHD1-202ENST00000577300 C9orf116Q5BN46 136 aaPredicted RBP1.89□□□□□ -2.11
SMCHD1-202ENST00000577300 ZNF818PQ6ZRF7 136 aa1.89□□□□□ -2.11
SMCHD1-202ENST00000577300 RPS27LQ71UM5 84 aaKnown RBP1.89□□□□□ -2.11
SMCHD1-202ENST00000577300 MIR17HGQ75NE6 70 aa1.89□□□□□ -2.11
SMCHD1-202ENST00000577300 ORMDL3Q8N138 153 aa1.89□□□□□ -2.11
SMCHD1-202ENST00000577300 DYNAPQ8N1N2 210 aa1.89□□□□□ -2.11
SMCHD1-202ENST00000577300 Q8N6K4 173 aa1.89□□□□□ -2.11
SMCHD1-202ENST00000577300 SPTSSBQ8NFR3 76 aa1.89□□□□□ -2.11
SMCHD1-202ENST00000577300 TIMM21Q9BVV7 248 aa1.89□□□□□ -2.11
SMCHD1-202ENST00000577300 PHLDA3Q9Y5J5 127 aa1.89□□□□□ -2.11
SMCHD1-202ENST00000577300 ANKRD36A6QL64 1941 aa1.89□□□□□ -2.11
SMCHD1-202ENST00000577300 ANKRD12Q6UB98 2062 aa1.89□□□□□ -2.11
SMCHD1-202ENST00000577300 ERCC6L2Q5T890 1561 aa1.89□□□□□ -2.11
SMCHD1-202ENST00000577300 LY75O60449 1722 aa1.88□□□□□ -2.11
SMCHD1-202ENST00000577300 NRXN3Q9Y4C0 1643 aa1.88□□□□□ -2.11
SMCHD1-202ENST00000577300 IGKV3D-7A0A0C4DH55 119 aa1.88□□□□□ -2.11
SMCHD1-202ENST00000577300 CTXND1A0A1B0GTU2 59 aa1.88□□□□□ -2.11
SMCHD1-202ENST00000577300 IGHV3-33P01772 117 aa1.88□□□□□ -2.11
SMCHD1-202ENST00000577300 TFF1P04155 84 aa1.88□□□□□ -2.11
SMCHD1-202ENST00000577300 BAALC-AS2P0C853 105 aa1.88□□□□□ -2.11
SMCHD1-202ENST00000577300 PRB4P10163 310 aaPredicted RBP1.88□□□□□ -2.11
SMCHD1-202ENST00000577300 RPL28P46779 137 aaKnown RBP1.88□□□□□ -2.11
SMCHD1-202ENST00000577300 CMC4P56277 68 aaPredicted RBP1.88□□□□□ -2.11
SMCHD1-202ENST00000577300 PLGLAQ15195 96 aa1.88□□□□□ -2.11
SMCHD1-202ENST00000577300 SPANXN1Q5VSR9 72 aa1.88□□□□□ -2.11
SMCHD1-202ENST00000577300 LYPD2Q6UXB3 125 aa1.88□□□□□ -2.11
SMCHD1-202ENST00000577300 RPRMLQ8N4K4 120 aa1.88□□□□□ -2.11
SMCHD1-202ENST00000577300 ZFAND2AQ8N6M9 145 aa1.88□□□□□ -2.11
SMCHD1-202ENST00000577300 Q8N814 137 aa1.88□□□□□ -2.11
SMCHD1-202ENST00000577300 DYNLRB2Q8TF09 96 aa1.88□□□□□ -2.11
SMCHD1-202ENST00000577300 Q96M85 177 aa1.88□□□□□ -2.11
SMCHD1-202ENST00000577300 TXNDC17Q9BRA2 123 aa1.88□□□□□ -2.11
SMCHD1-202ENST00000577300 CYP4F30PQ9H0H9 118 aa1.88□□□□□ -2.11
SMCHD1-202ENST00000577300 LINC00597Q9H2U6 94 aa1.88□□□□□ -2.11
SMCHD1-202ENST00000577300 PRO1854Q9UHT4 67 aa1.88□□□□□ -2.11
SMCHD1-202ENST00000577300 TIMM9Q9Y5J7 89 aa1.88□□□□□ -2.11
SMCHD1-202ENST00000577300 NUP98P52948 1817 aa1.88□□□□□ -2.11
SMCHD1-202ENST00000577300 TRPM6Q9BX84 2022 aa1.88□□□□□ -2.11
SMCHD1-202ENST00000577300 SHANK1Q9Y566 2161 aa1.88□□□□□ -2.11
SMCHD1-202ENST00000577300 DLG5Q8TDM6 1919 aa1.87□□□□□ -2.11
SMCHD1-202ENST00000577300 LTBP2Q14767 1821 aa1.87□□□□□ -2.11
SMCHD1-202ENST00000577300 LAMA4Q16363 1823 aa1.87□□□□□ -2.11
SMCHD1-202ENST00000577300 A0A087WVE0 104 aa1.87□□□□□ -2.11
SMCHD1-202ENST00000577300 IGHV3-72A0A0B4J1Y9 119 aa1.87□□□□□ -2.11
SMCHD1-202ENST00000577300 TRBV30A0A0K0K1B3 111 aa1.87□□□□□ -2.11
SMCHD1-202ENST00000577300 SDHAF1A6NFY7 115 aa1.87□□□□□ -2.11
SMCHD1-202ENST00000577300 MGAMO43451 1857 aa1.87□□□□□ -2.11
SMCHD1-202ENST00000577300 LY6HO94772 140 aa1.87□□□□□ -2.11
SMCHD1-202ENST00000577300 IGKV1D-33P01593 117 aa1.87□□□□□ -2.11
SMCHD1-202ENST00000577300 IGKV1-33P01594 117 aa1.87□□□□□ -2.11
SMCHD1-202ENST00000577300 BGLAPP02818 100 aa1.87□□□□□ -2.11
SMCHD1-202ENST00000577300 RPL27AP46776 148 aaKnown RBP1.87□□□□□ -2.11
SMCHD1-202ENST00000577300 DDX60LQ5H9U9 1706 aaKnown RBP1.87□□□□□ -2.11
SMCHD1-202ENST00000577300 C1orf134Q5TEV5 83 aa1.87□□□□□ -2.11
SMCHD1-202ENST00000577300 Q8NDZ9 215 aa1.87□□□□□ -2.11
SMCHD1-202ENST00000577300 TMEM263Q8WUH6 116 aaKnown RBP1.87□□□□□ -2.11
SMCHD1-202ENST00000577300 FAM167A-AS1Q96KT0 104 aa1.87□□□□□ -2.11
SMCHD1-202ENST00000577300 RETNLBQ9BQ08 111 aa1.87□□□□□ -2.11
SMCHD1-202ENST00000577300 CDC42SE1Q9NRR8 79 aa1.87□□□□□ -2.11
SMCHD1-202ENST00000577300 TMEM14BQ9NUH8 114 aa1.87□□□□□ -2.11
SMCHD1-202ENST00000577300 PARP4Q9UKK3 1724 aaKnown RBP1.87□□□□□ -2.11
SMCHD1-202ENST00000577300 SNURFQ9Y675 71 aa1.87□□□□□ -2.11
SMCHD1-202ENST00000577300 GREB1Q4ZG55 1949 aa1.87□□□□□ -2.11
SMCHD1-202ENST00000577300 NUMA1Q14980 2115 aa1.87□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms