RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 MEIKINA0A087WXM9 373 aa3.24□□□□□ -1.89
VPS53-219ENST00000576019 TRGV10A0A0A0MS01 117 aa3.24□□□□□ -1.89
VPS53-219ENST00000576019 A0A1B0GVG6 124 aa3.24□□□□□ -1.89
VPS53-219ENST00000576019 PSCAO43653 123 aa3.24□□□□□ -1.89
VPS53-219ENST00000576019 DPM2O94777 84 aa3.24□□□□□ -1.89
VPS53-219ENST00000576019 TCL1BO95988 128 aa3.24□□□□□ -1.89
VPS53-219ENST00000576019 MT-ND4LP03901 98 aa3.24□□□□□ -1.89
VPS53-219ENST00000576019 SCTP09683 121 aa3.24□□□□□ -1.89
VPS53-219ENST00000576019 METTL15P1P0C7V9 234 aa3.24□□□□□ -1.89
VPS53-219ENST00000576019 NFYAP23511 347 aaPredicted RBP3.24□□□□□ -1.89
VPS53-219ENST00000576019 RBP2P50120 134 aa3.24□□□□□ -1.89
VPS53-219ENST00000576019 NDUFA6P56556 154 aa3.24□□□□□ -1.89
VPS53-219ENST00000576019 KRTAP10-6P60371 365 aaPredicted RBP3.24□□□□□ -1.89
VPS53-219ENST00000576019 FAM27BQ5VT28 67 aa3.24□□□□□ -1.89
VPS53-219ENST00000576019 EIF5AL1Q6IS14 154 aaKnown RBP3.24□□□□□ -1.89
VPS53-219ENST00000576019 LINC00305Q7Z4B0 112 aa3.24□□□□□ -1.89
VPS53-219ENST00000576019 SLC30A7Q8NEW0 376 aa3.24□□□□□ -1.89
VPS53-219ENST00000576019 ZNF714Q96N38 554 aa3.24□□□□□ -1.89
VPS53-219ENST00000576019 ZNF471Q9BX82 626 aaPredicted RBP3.24□□□□□ -1.89
VPS53-219ENST00000576019 HHLA3Q9XRX5 114 aa3.24□□□□□ -1.89
VPS53-219ENST00000576019 LOC107984640A0A0U1RRK4 108 aa3.23□□□□□ -1.89
VPS53-219ENST00000576019 TSPAN19P0C672 248 aa3.23□□□□□ -1.89
VPS53-219ENST00000576019 KRTAP10-1P60331 282 aa3.23□□□□□ -1.89
VPS53-219ENST00000576019 MORN2Q502X0 79 aa3.23□□□□□ -1.89
VPS53-219ENST00000576019 Q5XG85 94 aa3.23□□□□□ -1.89
VPS53-219ENST00000576019 AQP3Q92482 292 aa3.23□□□□□ -1.89
VPS53-219ENST00000576019 AP1S3Q96PC3 154 aa3.23□□□□□ -1.89
VPS53-219ENST00000576019 IGHV1-58A0A0C4DH39 117 aa3.22□□□□□ -1.89
VPS53-219ENST00000576019 A0A0D9SG52 128 aa3.22□□□□□ -1.89
VPS53-219ENST00000576019 TRBV10-2A0A0K0K1G8 114 aa3.22□□□□□ -1.89
VPS53-219ENST00000576019 MEIS3P1A6NDR6 274 aa3.22□□□□□ -1.89
VPS53-219ENST00000576019 K7ERU9 68 aa3.22□□□□□ -1.89
VPS53-219ENST00000576019 KDELR1P24390 212 aa3.22□□□□□ -1.89
VPS53-219ENST00000576019 KRTAP10-4P60372 401 aaPredicted RBP3.22□□□□□ -1.89
VPS53-219ENST00000576019 DYNLT1P63172 113 aa3.22□□□□□ -1.89
VPS53-219ENST00000576019 TMEM244Q5VVB8 128 aa3.22□□□□□ -1.89
VPS53-219ENST00000576019 PHF5AQ7RTV0 110 aaKnown RBP3.22□□□□□ -1.89
VPS53-219ENST00000576019 SH2D6Q7Z4S9 175 aa3.22□□□□□ -1.89
VPS53-219ENST00000576019 M0R2Z0 102 aa3.21□□□□□ -1.9
VPS53-219ENST00000576019 IGLV1-51P01701 117 aa3.21□□□□□ -1.9
VPS53-219ENST00000576019 SHBGP04278 402 aa3.21□□□□□ -1.9
VPS53-219ENST00000576019 FXYD2P54710 66 aa3.21□□□□□ -1.9
VPS53-219ENST00000576019 LINC00315P59091 139 aa3.21□□□□□ -1.9
VPS53-219ENST00000576019 SELENOWP63302 87 aa3.21□□□□□ -1.9
VPS53-219ENST00000576019 KRTAP6-3Q3LI67 103 aa3.21□□□□□ -1.9
VPS53-219ENST00000576019 LCE3CQ5T5A8 94 aa3.21□□□□□ -1.9
VPS53-219ENST00000576019 HCP5Q6MZN7 132 aa3.21□□□□□ -1.9
VPS53-219ENST00000576019 LCN15Q6UWW0 184 aa3.21□□□□□ -1.9
VPS53-219ENST00000576019 OR51A4Q8NGJ6 313 aa3.21□□□□□ -1.9
VPS53-219ENST00000576019 BRK1Q8WUW1 75 aa3.21□□□□□ -1.9
VPS53-219ENST00000576019 GNG8Q9UK08 70 aa3.21□□□□□ -1.9
VPS53-219ENST00000576019 ERG28Q9UKR5 140 aa3.21□□□□□ -1.9
VPS53-219ENST00000576019 BAIAP2Q9UQB8 552 aa3.21□□□□□ -1.9
VPS53-219ENST00000576019 LRCOL1A6NCL2 159 aa3.2□□□□□ -1.9
VPS53-219ENST00000576019 H3BMG7 143 aa3.2□□□□□ -1.9
VPS53-219ENST00000576019 HIST1H2BKO60814 126 aa3.2□□□□□ -1.9
VPS53-219ENST00000576019 HIST1H2BJP06899 126 aa3.2□□□□□ -1.9
VPS53-219ENST00000576019 RPL35P42766 123 aaKnown RBP3.2□□□□□ -1.9
VPS53-219ENST00000576019 SSR2P43308 183 aa3.2□□□□□ -1.9
VPS53-219ENST00000576019 KRTAP10-7P60409 375 aaPredicted RBP3.2□□□□□ -1.9
VPS53-219ENST00000576019 KRTAP10-12P60413 245 aa3.2□□□□□ -1.9
VPS53-219ENST00000576019 HES1Q14469 280 aa3.2□□□□□ -1.9
VPS53-219ENST00000576019 LINC00301Q8NCQ3 95 aa3.2□□□□□ -1.9
VPS53-219ENST00000576019 C4orf3Q8WVX3 66 aa3.2□□□□□ -1.9
VPS53-219ENST00000576019 PPP3R2Q96LZ3 170 aa3.2□□□□□ -1.9
VPS53-219ENST00000576019 TRAV13-1A0A0B4J241 112 aa3.19□□□□□ -1.9
VPS53-219ENST00000576019 A0A1W2PNM2 257 aa3.19□□□□□ -1.9
VPS53-219ENST00000576019 C7orf71A4D174 169 aa3.19□□□□□ -1.9
VPS53-219ENST00000576019 RER1O15258 196 aa3.19□□□□□ -1.9
VPS53-219ENST00000576019 EVI2AP22794 236 aa3.19□□□□□ -1.9
VPS53-219ENST00000576019 RAB5CP51148 216 aa3.19□□□□□ -1.9
VPS53-219ENST00000576019 MYL5Q02045 173 aa3.19□□□□□ -1.9
VPS53-219ENST00000576019 OCIAD2Q56VL3 154 aa3.19□□□□□ -1.9
VPS53-219ENST00000576019 PABPC1L2AQ5JQF8 200 aa3.19□□□□□ -1.9
VPS53-219ENST00000576019 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.19□□□□□ -1.9
VPS53-219ENST00000576019 AAED1Q7RTV5 226 aa3.19□□□□□ -1.9
VPS53-219ENST00000576019 C15orf53Q8NAA6 179 aa3.19□□□□□ -1.9
VPS53-219ENST00000576019 LINC00470Q9BZP3 86 aa3.19□□□□□ -1.9
VPS53-219ENST00000576019 TRBV7-6A0A0J9YX20 115 aa3.18□□□□□ -1.9
VPS53-219ENST00000576019 G3V3Q6 166 aa3.18□□□□□ -1.9
VPS53-219ENST00000576019 MT-ND6P03923 174 aa3.18□□□□□ -1.9
VPS53-219ENST00000576019 TRGC1P0CF51 173 aa3.18□□□□□ -1.9
VPS53-219ENST00000576019 ZNF181Q2M3W8 571 aa3.18□□□□□ -1.9
VPS53-219ENST00000576019 Q6ZQT0 140 aa3.18□□□□□ -1.9
VPS53-219ENST00000576019 TP53RKQ96S44 253 aa3.18□□□□□ -1.9
VPS53-219ENST00000576019 TAF9BQ9HBM6 251 aa3.18□□□□□ -1.9
VPS53-219ENST00000576019 BCL2L10Q9HD36 194 aa3.18□□□□□ -1.9
VPS53-219ENST00000576019 NIT2Q9NQR4 276 aa3.18□□□□□ -1.9
VPS53-219ENST00000576019 OR5AC2Q9NZP5 309 aa3.18□□□□□ -1.9
VPS53-219ENST00000576019 MUC12Q9UKN1 5478 aa3.17□□□□□ -1.9
VPS53-219ENST00000576019 IGHV3-64A0A075B6Q5 118 aa3.17□□□□□ -1.9
VPS53-219ENST00000576019 TRAV3A0A0B4J244 114 aa3.17□□□□□ -1.9
VPS53-219ENST00000576019 ODF3BA8MYP8 253 aa3.17□□□□□ -1.9
VPS53-219ENST00000576019 GNG7O60262 68 aa3.17□□□□□ -1.9
VPS53-219ENST00000576019 TIMM17BO60830 172 aa3.17□□□□□ -1.9
VPS53-219ENST00000576019 CTSGP08311 255 aa3.17□□□□□ -1.9
VPS53-219ENST00000576019 FUSP35637 526 aaKnown RBP eCLIP3.17□□□□□ -1.9
VPS53-219ENST00000576019 OR5D16Q8NGK9 328 aa3.17□□□□□ -1.9
VPS53-219ENST00000576019 OR5H6Q8NGV6 325 aa3.17□□□□□ -1.9
VPS53-219ENST00000576019 ARL11Q969Q4 196 aa3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 107.8 ms