RNA–Protein interactions for RNA: ENST00000575513.1

CIITA-210, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 516 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-210ENST00000575513 CHCHD5Q9BSY4 110 aa9.07□□□□□ -0.96
CIITA-210ENST00000575513 Q9HAA7 133 aa9.07□□□□□ -0.96
CIITA-210ENST00000575513 LRP1BQ9NZR2 4599 aa9.06□□□□□ -0.96
CIITA-210ENST00000575513 TRAV9-1A0A075B6T8 112 aa9.06□□□□□ -0.96
CIITA-210ENST00000575513 TRBV6-5A0A0K0K1A5 114 aa9.06□□□□□ -0.96
CIITA-210ENST00000575513 C7orf77A4D0Y5 90 aa9.06□□□□□ -0.96
CIITA-210ENST00000575513 LRCOL1A6NCL2 159 aa9.06□□□□□ -0.96
CIITA-210ENST00000575513 NDUFA5Q16718 116 aa9.06□□□□□ -0.96
CIITA-210ENST00000575513 ATRAIDQ6UW56 229 aa9.06□□□□□ -0.96
CIITA-210ENST00000575513 BTF3L4Q96K17 158 aa9.06□□□□□ -0.96
CIITA-210ENST00000575513 KLK12Q9UKR0 248 aa9.06□□□□□ -0.96
CIITA-210ENST00000575513 PPP1R17O96001 155 aa9.05□□□□□ -0.96
CIITA-210ENST00000575513 RPL39LQ96EH5 51 aaKnown RBP9.05□□□□□ -0.96
CIITA-210ENST00000575513 KIAA1109Q2LD37 5005 aa9.05□□□□□ -0.96
CIITA-210ENST00000575513 A0A1B0GUV1 79 aa9.04□□□□□ -0.96
CIITA-210ENST00000575513 NCR2O95944 276 aa9.04□□□□□ -0.96
CIITA-210ENST00000575513 APOC3P02656 99 aa9.04□□□□□ -0.96
CIITA-210ENST00000575513 COTL1Q14019 142 aa9.04□□□□□ -0.96
CIITA-210ENST00000575513 MRPL51Q4U2R6 128 aaKnown RBP9.04□□□□□ -0.96
CIITA-210ENST00000575513 MPV17L2Q567V2 206 aa9.04□□□□□ -0.96
CIITA-210ENST00000575513 SVBPQ8N300 66 aa9.04□□□□□ -0.96
CIITA-210ENST00000575513 TMEM243Q9BU79 118 aa9.04□□□□□ -0.96
CIITA-210ENST00000575513 DNAH5Q8TE73 4624 aa9.03□□□□□ -0.96
CIITA-210ENST00000575513 HERC2O95714 4834 aa9.03□□□□□ -0.96
CIITA-210ENST00000575513 SDHAF1A6NFY7 115 aa9.03□□□□□ -0.96
CIITA-210ENST00000575513 CDK2AP2O75956 126 aa9.03□□□□□ -0.96
CIITA-210ENST00000575513 GAS8-AS1O95177 125 aa9.03□□□□□ -0.96
CIITA-210ENST00000575513 SNAPINO95295 136 aa9.03□□□□□ -0.96
CIITA-210ENST00000575513 NTN5Q8WTR8 489 aaPredicted RBP9.03□□□□□ -0.96
CIITA-210ENST00000575513 UBE2WQ96B02 151 aa9.03□□□□□ -0.96
CIITA-210ENST00000575513 RPS10P5Q9NQ39 176 aa9.03□□□□□ -0.96
CIITA-210ENST00000575513 PPBPP02775 128 aa9.02□□□□□ -0.97
CIITA-210ENST00000575513 ANGP03950 147 aaKnown RBP9.02□□□□□ -0.97
CIITA-210ENST00000575513 S100PP25815 95 aa9.02□□□□□ -0.97
CIITA-210ENST00000575513 RPS10P46783 165 aaKnown RBP9.02□□□□□ -0.97
CIITA-210ENST00000575513 RBX1P62877 108 aa9.02□□□□□ -0.97
CIITA-210ENST00000575513 MIAQ16674 131 aa9.02□□□□□ -0.97
CIITA-210ENST00000575513 ENHOQ6UWT2 76 aa9.02□□□□□ -0.97
CIITA-210ENST00000575513 NRACQ8N912 160 aa9.02□□□□□ -0.97
CIITA-210ENST00000575513 ST20Q9HBF5 79 aa9.02□□□□□ -0.97
CIITA-210ENST00000575513 PRR34Q9NV39 138 aa9.02□□□□□ -0.97
CIITA-210ENST00000575513 H7C423 109 aa9.01□□□□□ -0.97
CIITA-210ENST00000575513 CRPP02741 224 aa9.01□□□□□ -0.97
CIITA-210ENST00000575513 POLR2KP53803 58 aaKnown RBP9.01□□□□□ -0.97
CIITA-210ENST00000575513 GAGE6Q13070 117 aa9.01□□□□□ -0.97
CIITA-210ENST00000575513 Q8N814 137 aa9.01□□□□□ -0.97
CIITA-210ENST00000575513 Q8N976 141 aa9.01□□□□□ -0.97
CIITA-210ENST00000575513 TMEM70Q9BUB7 260 aa9.01□□□□□ -0.97
CIITA-210ENST00000575513 TRBV24-1A0A075B6N3 115 aa9□□□□□ -0.97
CIITA-210ENST00000575513 IGKV2D-24A0A075B6R9 120 aa9□□□□□ -0.97
CIITA-210ENST00000575513 TRBV27A0A0K0K1C4 114 aa9□□□□□ -0.97
CIITA-210ENST00000575513 SMKR1H3BMG3 65 aa9□□□□□ -0.97
CIITA-210ENST00000575513 I3L3M4 83 aa9□□□□□ -0.97
CIITA-210ENST00000575513 PHOX2AO14813 284 aa9□□□□□ -0.97
CIITA-210ENST00000575513 CKS2P33552 79 aa9□□□□□ -0.97
CIITA-210ENST00000575513 AMTP48728 403 aa9□□□□□ -0.97
CIITA-210ENST00000575513 RPL32P62910 135 aaKnown RBP9□□□□□ -0.97
CIITA-210ENST00000575513 SLC7A5P1Q8MH63 180 aa9□□□□□ -0.97
CIITA-210ENST00000575513 MAPKAPK5-AS1Q8N8E1 139 aa9□□□□□ -0.97
CIITA-210ENST00000575513 C20orf78Q9BR46 151 aa9□□□□□ -0.97
CIITA-210ENST00000575513 C1orf43Q9BWL3 253 aa9□□□□□ -0.97
CIITA-210ENST00000575513 D6R8Y8 96 aa8.99□□□□□ -0.97
CIITA-210ENST00000575513 UBE2L6O14933 153 aa8.99□□□□□ -0.97
CIITA-210ENST00000575513 SUMO2P61956 95 aaKnown RBP8.99□□□□□ -0.97
CIITA-210ENST00000575513 VCYO14598 125 aa8.98□□□□□ -0.97
CIITA-210ENST00000575513 PMCHP20382 165 aa8.98□□□□□ -0.97
CIITA-210ENST00000575513 COX19Q49B96 90 aa8.98□□□□□ -0.97
CIITA-210ENST00000575513 TMEM136Q6ZRR5 245 aa8.98□□□□□ -0.97
CIITA-210ENST00000575513 ORMDL3Q8N138 153 aa8.98□□□□□ -0.97
CIITA-210ENST00000575513 LINC00269Q8N2A0 174 aa8.98□□□□□ -0.97
CIITA-210ENST00000575513 RYR1P21817 5038 aa8.97□□□□□ -0.97
CIITA-210ENST00000575513 TRAV8-4A0A0B4J246 113 aa8.97□□□□□ -0.97
CIITA-210ENST00000575513 TNFRSF6BO95407 300 aa8.97□□□□□ -0.97
CIITA-210ENST00000575513 APCSP02743 223 aa8.97□□□□□ -0.97
CIITA-210ENST00000575513 GCSHP23434 173 aa8.97□□□□□ -0.97
CIITA-210ENST00000575513 REG3AQ06141 175 aa8.97□□□□□ -0.97
CIITA-210ENST00000575513 C20orf203Q8NBC4 194 aa8.97□□□□□ -0.97
CIITA-210ENST00000575513 LAMTOR2Q9Y2Q5 125 aa8.97□□□□□ -0.97
CIITA-210ENST00000575513 IGLV5-52A0A0A0MRZ9 124 aa8.96□□□□□ -0.98
CIITA-210ENST00000575513 TSHBP01222 138 aa8.96□□□□□ -0.98
CIITA-210ENST00000575513 NPYP01303 97 aa8.96□□□□□ -0.98
CIITA-210ENST00000575513 HLA-DQA1P01909 254 aa8.96□□□□□ -0.98
CIITA-210ENST00000575513 BAALCQ8WXS3 180 aa8.96□□□□□ -0.98
CIITA-210ENST00000575513 PRELID3AQ96N28 172 aa8.96□□□□□ -0.98
CIITA-210ENST00000575513 GNB1LQ9BYB4 327 aa8.96□□□□□ -0.98
CIITA-210ENST00000575513 HSPG2P98160 4391 aa8.96□□□□□ -0.98
CIITA-210ENST00000575513 APOBP04114 4563 aaKnown RBP8.95□□□□□ -0.98
CIITA-210ENST00000575513 IGLV4-60A0A075B6I1 120 aa8.95□□□□□ -0.98
CIITA-210ENST00000575513 PRSS47A8MTI9 375 aa8.95□□□□□ -0.98
CIITA-210ENST00000575513 ESDP10768 282 aa8.95□□□□□ -0.98
CIITA-210ENST00000575513 ZNF25P17030 456 aaPredicted RBP8.95□□□□□ -0.98
CIITA-210ENST00000575513 WFDC2Q14508 124 aa8.95□□□□□ -0.98
CIITA-210ENST00000575513 C14orf177Q52M58 125 aa8.95□□□□□ -0.98
CIITA-210ENST00000575513 DEFB104AQ8WTQ1 72 aa8.95□□□□□ -0.98
CIITA-210ENST00000575513 KIR2DL4Q99706 377 aa8.95□□□□□ -0.98
CIITA-210ENST00000575513 SMIM2Q9BVW6 85 aa8.95□□□□□ -0.98
CIITA-210ENST00000575513 TCAPO15273 167 aa8.94□□□□□ -0.98
CIITA-210ENST00000575513 MT-ND6P03923 174 aa8.94□□□□□ -0.98
CIITA-210ENST00000575513 AMMECR1LQ6DCA0 310 aa8.94□□□□□ -0.98
CIITA-210ENST00000575513 KRTAP26-1Q6PEX3 210 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms