RNA–Protein interactions for RNA: ENST00000575338.1

SMG6-217, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 4

Gene SMG6, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-217ENST00000575338 PTTG1IPP53801 180 aa4.92□□□□□ -1.62
SMG6-217ENST00000575338 TMEM170BQ5T4T1 132 aa4.92□□□□□ -1.62
SMG6-217ENST00000575338 DGAT2L7PQ6IED9 249 aa4.92□□□□□ -1.62
SMG6-217ENST00000575338 NEGR1Q7Z3B1 354 aa4.92□□□□□ -1.62
SMG6-217ENST00000575338 PCP2Q8IVA1 136 aa4.92□□□□□ -1.62
SMG6-217ENST00000575338 KIR2DL5BQ8NHK3 375 aa4.92□□□□□ -1.62
SMG6-217ENST00000575338 CHAC1Q9BUX1 264 aa4.92□□□□□ -1.62
SMG6-217ENST00000575338 C19orf73Q9NVV2 129 aa4.92□□□□□ -1.62
SMG6-217ENST00000575338 IGHV3-73A0A0B4J1V6 119 aa4.91□□□□□ -1.62
SMG6-217ENST00000575338 H3BRM9 83 aa4.91□□□□□ -1.62
SMG6-217ENST00000575338 RPL39P62891 51 aaKnown RBP4.91□□□□□ -1.62
SMG6-217ENST00000575338 MRPS36P82909 103 aaKnown RBP4.91□□□□□ -1.62
SMG6-217ENST00000575338 SCGB1D4Q6XE38 83 aa4.91□□□□□ -1.62
SMG6-217ENST00000575338 PLEKHB2Q96CS7 222 aa4.91□□□□□ -1.62
SMG6-217ENST00000575338 CITED1Q99966 193 aa4.91□□□□□ -1.62
SMG6-217ENST00000575338 PRADC1Q9BSG0 188 aa4.91□□□□□ -1.62
SMG6-217ENST00000575338 GTSF1LQ9H1H1 148 aa4.91□□□□□ -1.62
SMG6-217ENST00000575338 CSDC2Q9Y534 153 aaKnown RBP4.91□□□□□ -1.62
SMG6-217ENST00000575338 IGLV4-69A0A075B6H9 119 aa4.9□□□□□ -1.63
SMG6-217ENST00000575338 IGLV4-3A0A075B6K6 122 aa4.9□□□□□ -1.63
SMG6-217ENST00000575338 IGKV2D-26A0A0A0MRZ7 120 aa4.9□□□□□ -1.63
SMG6-217ENST00000575338 TRGV4A0A0C4DH28 118 aa4.9□□□□□ -1.63
SMG6-217ENST00000575338 ZNF815PA8K554 130 aa4.9□□□□□ -1.63
SMG6-217ENST00000575338 UBE2L6O14933 153 aa4.9□□□□□ -1.63
SMG6-217ENST00000575338 SMIM13P0DJ93 91 aa4.9□□□□□ -1.63
SMG6-217ENST00000575338 P0DMU3 169 aa4.9□□□□□ -1.63
SMG6-217ENST00000575338 FAM231AP0DMU4 169 aa4.9□□□□□ -1.63
SMG6-217ENST00000575338 FAM231CP0DMU5 169 aa4.9□□□□□ -1.63
SMG6-217ENST00000575338 LGALS3P17931 250 aaKnown RBP4.9□□□□□ -1.63
SMG6-217ENST00000575338 GTF2H5Q6ZYL4 71 aa4.9□□□□□ -1.63
SMG6-217ENST00000575338 CEND1Q8N111 149 aa4.9□□□□□ -1.63
SMG6-217ENST00000575338 CSNK1G2-AS1Q8NCQ2 148 aa4.9□□□□□ -1.63
SMG6-217ENST00000575338 TMEM101Q96IK0 257 aa4.9□□□□□ -1.63
SMG6-217ENST00000575338 AMELXQ99217 191 aa4.9□□□□□ -1.63
SMG6-217ENST00000575338 HIST1H4GQ99525 98 aa4.9□□□□□ -1.63
SMG6-217ENST00000575338 TM2D2Q9BX73 214 aa4.9□□□□□ -1.63
SMG6-217ENST00000575338 NOP10Q9NPE3 64 aaKnown RBP4.9□□□□□ -1.63
SMG6-217ENST00000575338 TINCRA0A1B0GVN0 87 aa4.89□□□□□ -1.63
SMG6-217ENST00000575338 LYRM9A8MSI8 78 aa4.89□□□□□ -1.63
SMG6-217ENST00000575338 LEPROTO15243 131 aa4.89□□□□□ -1.63
SMG6-217ENST00000575338 WIPF1O43516 503 aa4.89□□□□□ -1.63
SMG6-217ENST00000575338 GCSHP23434 173 aa4.89□□□□□ -1.63
SMG6-217ENST00000575338 KRTAP10-3P60369 221 aa4.89□□□□□ -1.63
SMG6-217ENST00000575338 VAMP3Q15836 100 aa4.89□□□□□ -1.63
SMG6-217ENST00000575338 HIST2H2BDQ6DRA6 164 aa4.89□□□□□ -1.63
SMG6-217ENST00000575338 Q6ZTI0 123 aa4.89□□□□□ -1.63
SMG6-217ENST00000575338 ZNRF2Q8NHG8 242 aa4.89□□□□□ -1.63
SMG6-217ENST00000575338 UBE2D4Q9Y2X8 147 aa4.89□□□□□ -1.63
SMG6-217ENST00000575338 ACANP16112 2415 aa4.88□□□□□ -1.63
SMG6-217ENST00000575338 TEX48A0A1B0GUV7 120 aa4.88□□□□□ -1.63
SMG6-217ENST00000575338 GAGE12BA1L429 117 aa4.88□□□□□ -1.63
SMG6-217ENST00000575338 C9orf118A6NHY6 69 aa4.88□□□□□ -1.63
SMG6-217ENST00000575338 TMEM238C9JI98 176 aa4.88□□□□□ -1.63
SMG6-217ENST00000575338 J3QQQ9 107 aa4.88□□□□□ -1.63
SMG6-217ENST00000575338 TAX1BP3O14907 124 aa4.88□□□□□ -1.63
SMG6-217ENST00000575338 GAGE7O76087 117 aa4.88□□□□□ -1.63
SMG6-217ENST00000575338 GIG44P09565 113 aaPredicted RBP4.88□□□□□ -1.63
SMG6-217ENST00000575338 GAGE12FP0CL80 117 aa4.88□□□□□ -1.63
SMG6-217ENST00000575338 GAGE12GP0CL81 117 aa4.88□□□□□ -1.63
SMG6-217ENST00000575338 GAGE12IP0CL82 117 aa4.88□□□□□ -1.63
SMG6-217ENST00000575338 UBE2D3P61077 147 aa4.88□□□□□ -1.63
SMG6-217ENST00000575338 UBE2D2P62837 147 aa4.88□□□□□ -1.63
SMG6-217ENST00000575338 HERVK_113P63121 156 aa4.88□□□□□ -1.63
SMG6-217ENST00000575338 SRSF9Q13242 221 aaKnown RBP eCLIP4.88□□□□□ -1.63
SMG6-217ENST00000575338 UBE2V1Q13404 147 aa4.88□□□□□ -1.63
SMG6-217ENST00000575338 KRTAP21-3Q3LHN1 58 aa4.88□□□□□ -1.63
SMG6-217ENST00000575338 AMMECR1LQ6DCA0 310 aa4.88□□□□□ -1.63
SMG6-217ENST00000575338 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.88□□□□□ -1.63
SMG6-217ENST00000575338 WFDC9Q8NEX5 89 aa4.88□□□□□ -1.63
SMG6-217ENST00000575338 ZNF479Q96JC4 524 aa4.88□□□□□ -1.63
SMG6-217ENST00000575338 CHCHD7Q9BUK0 85 aa4.88□□□□□ -1.63
SMG6-217ENST00000575338 GEMIN7Q9H840 131 aaKnown RBP4.88□□□□□ -1.63
SMG6-217ENST00000575338 SPANXB1Q9NS25 103 aaPredicted RBP4.88□□□□□ -1.63
SMG6-217ENST00000575338 AKAP9Q99996 3911 aa4.88□□□□□ -1.63
SMG6-217ENST00000575338 TMEM223A0PJW6 202 aa4.87□□□□□ -1.63
SMG6-217ENST00000575338 MIFP14174 115 aa4.87□□□□□ -1.63
SMG6-217ENST00000575338 ZNF22P17026 224 aaPredicted RBP4.87□□□□□ -1.63
SMG6-217ENST00000575338 TCTAP57738 103 aa4.87□□□□□ -1.63
SMG6-217ENST00000575338 TIRAPP58753 221 aa4.87□□□□□ -1.63
SMG6-217ENST00000575338 LYRM7Q5U5X0 104 aa4.87□□□□□ -1.63
SMG6-217ENST00000575338 Q6ZSN1 163 aa4.87□□□□□ -1.63
SMG6-217ENST00000575338 Q6ZVH6 145 aa4.87□□□□□ -1.63
SMG6-217ENST00000575338 SLC25A29Q8N8R3 303 aa4.87□□□□□ -1.63
SMG6-217ENST00000575338 PHLDA1Q8WV24 401 aaPredicted RBP4.87□□□□□ -1.63
SMG6-217ENST00000575338 COPS9Q8WXC6 57 aa4.87□□□□□ -1.63
SMG6-217ENST00000575338 TMEM243Q9BU79 118 aa4.87□□□□□ -1.63
SMG6-217ENST00000575338 WFDC10AQ9H1F0 79 aa4.87□□□□□ -1.63
SMG6-217ENST00000575338 TP73-AS1Q9UF72 201 aa4.87□□□□□ -1.63
SMG6-217ENST00000575338 IGHV1-58A0A0C4DH39 117 aa4.86□□□□□ -1.63
SMG6-217ENST00000575338 PLAC8L1A1L4L8 177 aa4.86□□□□□ -1.63
SMG6-217ENST00000575338 GAGE12JA6NER3 117 aa4.86□□□□□ -1.63
SMG6-217ENST00000575338 PRM2P04554 102 aa4.86□□□□□ -1.63
SMG6-217ENST00000575338 FABP2P12104 132 aa4.86□□□□□ -1.63
SMG6-217ENST00000575338 GAGE4Q13068 117 aa4.86□□□□□ -1.63
SMG6-217ENST00000575338 GAGE5Q13069 117 aa4.86□□□□□ -1.63
SMG6-217ENST00000575338 GAGE13Q4V321 117 aa4.86□□□□□ -1.63
SMG6-217ENST00000575338 FAM19A3Q7Z5A8 133 aa4.86□□□□□ -1.63
SMG6-217ENST00000575338 LINC00612Q8N6U2 182 aa4.86□□□□□ -1.63
SMG6-217ENST00000575338 OR5A1Q8NGJ0 315 aa4.86□□□□□ -1.63
SMG6-217ENST00000575338 ANK3Q12955 4377 aaKnown RBP4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms