RNA–Protein interactions for RNA: ENST00000574755.5

VPS33B-208, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 2,356 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-208ENST00000574755 MYMXA0A1B0GTQ4 84 aa10.12□□□□□ -0.79
VPS33B-208ENST00000574755 VAMP3Q15836 100 aa10.12□□□□□ -0.79
VPS33B-208ENST00000574755 TMEM170BQ5T4T1 132 aa10.12□□□□□ -0.79
VPS33B-208ENST00000574755 Q6ZTI0 123 aa10.12□□□□□ -0.79
VPS33B-208ENST00000574755 HERVK_113P61574 105 aa10.11□□□□□ -0.79
VPS33B-208ENST00000574755 ZNRF2Q8NHG8 242 aa10.11□□□□□ -0.79
VPS33B-208ENST00000574755 IGLV4-3A0A075B6K6 122 aa10.11□□□□□ -0.79
VPS33B-208ENST00000574755 IGHV3-38A0A0C4DH36 116 aa10.11□□□□□ -0.79
VPS33B-208ENST00000574755 PTTG1IPP53801 180 aa10.11□□□□□ -0.79
VPS33B-208ENST00000574755 PHLDA1Q8WV24 401 aaPredicted RBP10.11□□□□□ -0.79
VPS33B-208ENST00000574755 ZNF479Q96JC4 524 aa10.11□□□□□ -0.79
VPS33B-208ENST00000574755 VCX2Q9H322 139 aa10.11□□□□□ -0.79
VPS33B-208ENST00000574755 NOP10Q9NPE3 64 aaKnown RBP10.11□□□□□ -0.79
VPS33B-208ENST00000574755 FN1P02751 2386 aaKnown RBP10.11□□□□□ -0.79
VPS33B-208ENST00000574755 HIVEP1P15822 2718 aa10.11□□□□□ -0.79
VPS33B-208ENST00000574755 C16orf74Q96GX8 76 aa10.1□□□□□ -0.79
VPS33B-208ENST00000574755 UBE2V1Q13404 147 aa10.1□□□□□ -0.79
VPS33B-208ENST00000574755 PYGO1Q9Y3Y4 419 aa10.1□□□□□ -0.79
VPS33B-208ENST00000574755 FLNBO75369 2602 aaKnown RBP10.09□□□□□ -0.79
VPS33B-208ENST00000574755 ZNF815PA8K554 130 aa10.09□□□□□ -0.79
VPS33B-208ENST00000574755 K7EP13 123 aa10.09□□□□□ -0.79
VPS33B-208ENST00000574755 FXYD2P54710 66 aa10.09□□□□□ -0.79
VPS33B-208ENST00000574755 COTL1Q14019 142 aa10.09□□□□□ -0.79
VPS33B-208ENST00000574755 CEND1Q8N111 149 aa10.09□□□□□ -0.79
VPS33B-208ENST00000574755 H3BRM9 83 aa10.09□□□□□ -0.79
VPS33B-208ENST00000574755 CEMP1Q6PRD7 247 aaPredicted RBP10.09□□□□□ -0.79
VPS33B-208ENST00000574755 CSNK1G2-AS1Q8NCQ2 148 aa10.09□□□□□ -0.79
VPS33B-208ENST00000574755 CHCHD7Q9BUK0 85 aa10.09□□□□□ -0.79
VPS33B-208ENST00000574755 TRAV4A0A0B4J268 109 aa10.08□□□□□ -0.8
VPS33B-208ENST00000574755 CCL25O15444 150 aa10.08□□□□□ -0.8
VPS33B-208ENST00000574755 DAZ2Q13117 558 aaKnown RBP10.08□□□□□ -0.8
VPS33B-208ENST00000574755 RRN3P1Q2M238 152 aa10.08□□□□□ -0.8
VPS33B-208ENST00000574755 NFE4Q86UQ8 179 aa10.08□□□□□ -0.8
VPS33B-208ENST00000574755 RAB37Q96AX2 223 aa10.08□□□□□ -0.8
VPS33B-208ENST00000574755 HIST1H4GQ99525 98 aa10.08□□□□□ -0.8
VPS33B-208ENST00000574755 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.07□□□□□ -0.8
VPS33B-208ENST00000574755 PLAC8L1A1L4L8 177 aa10.07□□□□□ -0.8
VPS33B-208ENST00000574755 IGKV2-29A2NJV5 120 aaPredicted RBP10.07□□□□□ -0.8
VPS33B-208ENST00000574755 FOSL1P15407 271 aa10.07□□□□□ -0.8
VPS33B-208ENST00000574755 TAL2Q16559 108 aa10.07□□□□□ -0.8
VPS33B-208ENST00000574755 SCGB1D4Q6XE38 83 aa10.07□□□□□ -0.8
VPS33B-208ENST00000574755 TM2D2Q9BX73 214 aa10.07□□□□□ -0.8
VPS33B-208ENST00000574755 TRBV7-3A0A075B6L6 115 aa10.07□□□□□ -0.8
VPS33B-208ENST00000574755 K7EQD1 137 aa10.07□□□□□ -0.8
VPS33B-208ENST00000574755 CRLF1O75462 422 aa10.07□□□□□ -0.8
VPS33B-208ENST00000574755 AMMECR1LQ6DCA0 310 aa10.07□□□□□ -0.8
VPS33B-208ENST00000574755 VWFP04275 2813 aa10.06□□□□□ -0.8
VPS33B-208ENST00000574755 TRGV2A0A075B6R0 118 aa10.06□□□□□ -0.8
VPS33B-208ENST00000574755 A0A0J9YXV3 536 aa10.06□□□□□ -0.8
VPS33B-208ENST00000574755 C9orf118A6NHY6 69 aa10.06□□□□□ -0.8
VPS33B-208ENST00000574755 UBE2D4Q9Y2X8 147 aa10.06□□□□□ -0.8
VPS33B-208ENST00000574755 GAGE12BA1L429 117 aa10.06□□□□□ -0.8
VPS33B-208ENST00000574755 GAGE7O76087 117 aa10.06□□□□□ -0.8
VPS33B-208ENST00000574755 GAGE12FP0CL80 117 aa10.06□□□□□ -0.8
VPS33B-208ENST00000574755 GAGE12GP0CL81 117 aa10.06□□□□□ -0.8
VPS33B-208ENST00000574755 GAGE12IP0CL82 117 aa10.06□□□□□ -0.8
VPS33B-208ENST00000574755 SMIM13P0DJ93 91 aa10.06□□□□□ -0.8
VPS33B-208ENST00000574755 RPL36AP83881 106 aaKnown RBP10.06□□□□□ -0.8
VPS33B-208ENST00000574755 RNASE13Q5GAN3 156 aaKnown RBP10.06□□□□□ -0.8
VPS33B-208ENST00000574755 RPL36ALQ969Q0 106 aaKnown RBP10.06□□□□□ -0.8
VPS33B-208ENST00000574755 FAM104AQ969W3 186 aa10.06□□□□□ -0.8
VPS33B-208ENST00000574755 AMELXQ99217 191 aa10.06□□□□□ -0.8
VPS33B-208ENST00000574755 SPANXA1Q9NS26 97 aa10.06□□□□□ -0.8
VPS33B-208ENST00000574755 TENM1Q9UKZ4 2725 aa10.05□□□□□ -0.8
VPS33B-208ENST00000574755 TRBV10-1A0A0K0K1A3 114 aa10.05□□□□□ -0.8
VPS33B-208ENST00000574755 H3BUT2 72 aa10.05□□□□□ -0.8
VPS33B-208ENST00000574755 INSL3P51460 131 aa10.05□□□□□ -0.8
VPS33B-208ENST00000574755 SLC25A29Q8N8R3 303 aa10.05□□□□□ -0.8
VPS33B-208ENST00000574755 NHP2Q9NX24 153 aaKnown RBP10.05□□□□□ -0.8
VPS33B-208ENST00000574755 ZNF22P17026 224 aaPredicted RBP10.04□□□□□ -0.8
VPS33B-208ENST00000574755 CRYBA4P53673 196 aa10.04□□□□□ -0.8
VPS33B-208ENST00000574755 SPATA3Q8NHX4 192 aa10.04□□□□□ -0.8
VPS33B-208ENST00000574755 NAA38Q9BRA0 125 aaKnown RBP10.04□□□□□ -0.8
VPS33B-208ENST00000574755 TSPEAR-AS2P59090 65 aa10.04□□□□□ -0.8
VPS33B-208ENST00000574755 C9orf66Q5T8R8 295 aa10.04□□□□□ -0.8
VPS33B-208ENST00000574755 PLEKHB2Q96CS7 222 aa10.04□□□□□ -0.8
VPS33B-208ENST00000574755 TMEM223A0PJW6 202 aa10.03□□□□□ -0.8
VPS33B-208ENST00000574755 J3QQQ9 107 aa10.03□□□□□ -0.8
VPS33B-208ENST00000574755 K7ERJ3 54 aa10.03□□□□□ -0.8
VPS33B-208ENST00000574755 LGALS3P17931 250 aaKnown RBP10.03□□□□□ -0.8
VPS33B-208ENST00000574755 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.03□□□□□ -0.8
VPS33B-208ENST00000574755 OVOL2Q9BRP0 275 aa10.03□□□□□ -0.8
VPS33B-208ENST00000574755 IGHV3-64A0A075B6Q5 118 aa10.02□□□□□ -0.8
VPS33B-208ENST00000574755 MRPS36P82909 103 aaKnown RBP10.02□□□□□ -0.8
VPS33B-208ENST00000574755 Q6ZUT4 128 aa10.02□□□□□ -0.8
VPS33B-208ENST00000574755 GAGE12JA6NER3 117 aa10.02□□□□□ -0.81
VPS33B-208ENST00000574755 GAGE4Q13068 117 aa10.02□□□□□ -0.81
VPS33B-208ENST00000574755 GAGE5Q13069 117 aa10.02□□□□□ -0.81
VPS33B-208ENST00000574755 GAGE13Q4V321 117 aa10.02□□□□□ -0.81
VPS33B-208ENST00000574755 DAZ4Q86SG3 579 aaKnown RBP10.02□□□□□ -0.81
VPS33B-208ENST00000574755 DAZ3Q9NR90 486 aaKnown RBP10.02□□□□□ -0.81
VPS33B-208ENST00000574755 SRSF9Q13242 221 aaKnown RBP eCLIP10.01□□□□□ -0.81
VPS33B-208ENST00000574755 DGAT2L7PQ6IED9 249 aa10.01□□□□□ -0.81
VPS33B-208ENST00000574755 LEPROTO15243 131 aa10.01□□□□□ -0.81
VPS33B-208ENST00000574755 UBE2D3P61077 147 aa10.01□□□□□ -0.81
VPS33B-208ENST00000574755 UBE2D2P62837 147 aa10.01□□□□□ -0.81
VPS33B-208ENST00000574755 CITED1Q99966 193 aa10.01□□□□□ -0.81
VPS33B-208ENST00000574755 TRGV4A0A0C4DH28 118 aa10□□□□□ -0.81
VPS33B-208ENST00000574755 ATRQ13535 2644 aa10□□□□□ -0.81
VPS33B-208ENST00000574755 A0A0J9YY99 117 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms