RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 ADAMTSL4-AS1Q5T5F5 129 aa11.41□□□□□ -0.58
NUP88-207ENST00000573584 DSCR9P59020 149 aa11.41□□□□□ -0.58
NUP88-207ENST00000573584 Q6ZSN1 163 aa11.41□□□□□ -0.58
NUP88-207ENST00000573584 H3BMM0 161 aa11.4□□□□□ -0.58
NUP88-207ENST00000573584 LINC01620Q4KN68 170 aa11.4□□□□□ -0.58
NUP88-207ENST00000573584 VPREB3Q9UKI3 123 aa11.4□□□□□ -0.58
NUP88-207ENST00000573584 TRBV30A0A0K0K1B3 111 aa11.4□□□□□ -0.58
NUP88-207ENST00000573584 TRIAP1O43715 76 aa11.4□□□□□ -0.58
NUP88-207ENST00000573584 MAPK1IP1LQ8NDC0 245 aa11.4□□□□□ -0.58
NUP88-207ENST00000573584 VSIG2Q96IQ7 327 aa11.4□□□□□ -0.58
NUP88-207ENST00000573584 ZANQ9Y493 2812 aa11.39□□□□□ -0.59
NUP88-207ENST00000573584 TINCRA0A1B0GVN0 87 aa11.39□□□□□ -0.59
NUP88-207ENST00000573584 A8MZ25 164 aa11.39□□□□□ -0.59
NUP88-207ENST00000573584 NTN5Q8WTR8 489 aaPredicted RBP11.39□□□□□ -0.59
NUP88-207ENST00000573584 CHCHD7Q9BUK0 85 aa11.39□□□□□ -0.59
NUP88-207ENST00000573584 UTP20O75691 2785 aaKnown RBP11.39□□□□□ -0.59
NUP88-207ENST00000573584 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.39□□□□□ -0.59
NUP88-207ENST00000573584 IGKV2-29A2NJV5 120 aaPredicted RBP11.39□□□□□ -0.59
NUP88-207ENST00000573584 RBMY1BA6NDE4 496 aaKnown RBP11.39□□□□□ -0.59
NUP88-207ENST00000573584 RBMY1EA6NEQ0 496 aaKnown RBP11.39□□□□□ -0.59
NUP88-207ENST00000573584 RBMY1DP0C7P1 496 aaKnown RBP11.39□□□□□ -0.59
NUP88-207ENST00000573584 SLURP1P55000 103 aa11.39□□□□□ -0.59
NUP88-207ENST00000573584 DEFB136Q30KP8 78 aa11.39□□□□□ -0.59
NUP88-207ENST00000573584 UBE2D4Q9Y2X8 147 aa11.39□□□□□ -0.59
NUP88-207ENST00000573584 Q5PR19 223 aa11.39□□□□□ -0.59
NUP88-207ENST00000573584 ZNF702PQ9H963 129 aa11.39□□□□□ -0.59
NUP88-207ENST00000573584 SPANXA1Q9NS26 97 aa11.39□□□□□ -0.59
NUP88-207ENST00000573584 USP9YO00507 2555 aaPredicted RBP11.39□□□□□ -0.59
NUP88-207ENST00000573584 PRRC2AP48634 2157 aaKnown RBP11.38□□□□□ -0.59
NUP88-207ENST00000573584 SPANXDQ9BXN6 97 aa11.38□□□□□ -0.59
NUP88-207ENST00000573584 SPANXCQ9NY87 97 aa11.38□□□□□ -0.59
NUP88-207ENST00000573584 ZNF415Q09FC8 603 aa11.38□□□□□ -0.59
NUP88-207ENST00000573584 DOPEY1Q5JWR5 2465 aa11.37□□□□□ -0.59
NUP88-207ENST00000573584 NPC2P61916 151 aa11.37□□□□□ -0.59
NUP88-207ENST00000573584 C18orf65Q6ZTR6 163 aa11.37□□□□□ -0.59
NUP88-207ENST00000573584 PKD1L2Q7Z442 2459 aa11.37□□□□□ -0.59
NUP88-207ENST00000573584 IGHV3-38A0A0C4DH36 116 aa11.37□□□□□ -0.59
NUP88-207ENST00000573584 MIAQ16674 131 aa11.37□□□□□ -0.59
NUP88-207ENST00000573584 TRAV26-1A0A087WT03 109 aa11.36□□□□□ -0.59
NUP88-207ENST00000573584 A8MTW9 85 aa11.36□□□□□ -0.59
NUP88-207ENST00000573584 J3QLI3 93 aa11.36□□□□□ -0.59
NUP88-207ENST00000573584 LINC00467Q9BRT7 94 aa11.36□□□□□ -0.59
NUP88-207ENST00000573584 USP9XQ93008 2570 aaPredicted RBP11.36□□□□□ -0.59
NUP88-207ENST00000573584 TRBV10-2A0A0K0K1G8 114 aa11.36□□□□□ -0.59
NUP88-207ENST00000573584 PIK3CD-AS1Q5SR53 167 aa11.36□□□□□ -0.59
NUP88-207ENST00000573584 LINC01587Q99440 93 aa11.36□□□□□ -0.59
NUP88-207ENST00000573584 ICOSQ9Y6W8 199 aa11.36□□□□□ -0.59
NUP88-207ENST00000573584 MXRA5Q9NR99 2828 aa11.36□□□□□ -0.59
NUP88-207ENST00000573584 Q6YL49 198 aa11.35□□□□□ -0.59
NUP88-207ENST00000573584 TMEM61Q8N0U2 210 aa11.35□□□□□ -0.59
NUP88-207ENST00000573584 TEX49A0A1B0GTD5 131 aa11.35□□□□□ -0.59
NUP88-207ENST00000573584 Q6ZSV7 163 aa11.35□□□□□ -0.59
NUP88-207ENST00000573584 ZFAND6Q6FIF0 208 aa11.34□□□□□ -0.59
NUP88-207ENST00000573584 IGHV3-53P01767 116 aa11.34□□□□□ -0.59
NUP88-207ENST00000573584 COX6CP09669 75 aa11.34□□□□□ -0.59
NUP88-207ENST00000573584 TEX29Q8N6K0 151 aa11.34□□□□□ -0.59
NUP88-207ENST00000573584 A0A096LNT2 108 aa11.33□□□□□ -0.6
NUP88-207ENST00000573584 LINC01600Q96MT4 127 aa11.33□□□□□ -0.6
NUP88-207ENST00000573584 C11orf72Q8NBR9 251 aa11.33□□□□□ -0.6
NUP88-207ENST00000573584 YAE1D1Q9NRH1 226 aa11.33□□□□□ -0.6
NUP88-207ENST00000573584 CDKN2A-AS1Q9UH64 79 aa11.33□□□□□ -0.6
NUP88-207ENST00000573584 RPL13AP40429 203 aaKnown RBP11.32□□□□□ -0.6
NUP88-207ENST00000573584 DNAJC30Q96LL9 226 aa11.32□□□□□ -0.6
NUP88-207ENST00000573584 NACAE9PAV3 2078 aa11.32□□□□□ -0.6
NUP88-207ENST00000573584 C2orf82Q6UX34 121 aa11.32□□□□□ -0.6
NUP88-207ENST00000573584 DGAT2L7PQ6IED9 249 aa11.32□□□□□ -0.6
NUP88-207ENST00000573584 DAND5Q8N907 189 aa11.32□□□□□ -0.6
NUP88-207ENST00000573584 CITED1Q99966 193 aa11.32□□□□□ -0.6
NUP88-207ENST00000573584 MAP6D1Q9H9H5 199 aa11.32□□□□□ -0.6
NUP88-207ENST00000573584 PEMTQ9UBM1 199 aa11.32□□□□□ -0.6
NUP88-207ENST00000573584 H7C423 109 aa11.31□□□□□ -0.6
NUP88-207ENST00000573584 RNF183Q96D59 192 aa11.31□□□□□ -0.6
NUP88-207ENST00000573584 ANAPC13Q9BS18 74 aa11.31□□□□□ -0.6
NUP88-207ENST00000573584 SNCGO76070 127 aa11.3□□□□□ -0.6
NUP88-207ENST00000573584 CLEC2BQ92478 149 aa11.3□□□□□ -0.6
NUP88-207ENST00000573584 UBE2WQ96B02 151 aa11.3□□□□□ -0.6
NUP88-207ENST00000573584 POLQO75417 2590 aa11.3□□□□□ -0.6
NUP88-207ENST00000573584 TIMM17BO60830 172 aa11.3□□□□□ -0.6
NUP88-207ENST00000573584 BEAN1Q3B7T3 259 aa11.3□□□□□ -0.6
NUP88-207ENST00000573584 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.3□□□□□ -0.6
NUP88-207ENST00000573584 TMEM101Q96IK0 257 aa11.3□□□□□ -0.6
NUP88-207ENST00000573584 TRAV8-4A0A0B4J246 113 aa11.29□□□□□ -0.6
NUP88-207ENST00000573584 INSP01308 110 aa11.29□□□□□ -0.6
NUP88-207ENST00000573584 IFITM1P13164 125 aa11.29□□□□□ -0.6
NUP88-207ENST00000573584 TIRAPP58753 221 aa11.29□□□□□ -0.6
NUP88-207ENST00000573584 KHDC1LQ5JSQ8 128 aa11.29□□□□□ -0.6
NUP88-207ENST00000573584 DYNLRB2Q8TF09 96 aa11.29□□□□□ -0.6
NUP88-207ENST00000573584 CLUHP3Q96NS8 147 aa11.29□□□□□ -0.6
NUP88-207ENST00000573584 ANKRD17O75179 2603 aaKnown RBP11.29□□□□□ -0.6
NUP88-207ENST00000573584 NDUFA1O15239 70 aa11.29□□□□□ -0.6
NUP88-207ENST00000573584 RS1O15537 224 aa11.29□□□□□ -0.6
NUP88-207ENST00000573584 GAGE2BQ13066 116 aa11.29□□□□□ -0.6
NUP88-207ENST00000573584 GAGE2EQ4V326 116 aa11.29□□□□□ -0.6
NUP88-207ENST00000573584 GAGE2DQ9UEU5 116 aa11.29□□□□□ -0.6
NUP88-207ENST00000573584 TRAV4A0A0B4J268 109 aa11.28□□□□□ -0.6
NUP88-207ENST00000573584 CRLF1O75462 422 aa11.28□□□□□ -0.6
NUP88-207ENST00000573584 FSHBP01225 129 aa11.28□□□□□ -0.6
NUP88-207ENST00000573584 MYO18BQ8IUG5 2567 aa11.28□□□□□ -0.6
NUP88-207ENST00000573584 IGLV5-45A0A087WSX0 123 aa11.28□□□□□ -0.6
NUP88-207ENST00000573584 COX6A2Q02221 97 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms