RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 GAGE12FP0CL80 117 aa4.62□□□□□ -1.67
VPS53-213ENST00000572334 GAGE12GP0CL81 117 aa4.62□□□□□ -1.67
VPS53-213ENST00000572334 GAGE12IP0CL82 117 aa4.62□□□□□ -1.67
VPS53-213ENST00000572334 MGST1P10620 155 aaKnown RBP4.62□□□□□ -1.67
VPS53-213ENST00000572334 MIC13Q5XKP0 118 aa4.62□□□□□ -1.67
VPS53-213ENST00000572334 Q6ZQT7 251 aa4.62□□□□□ -1.67
VPS53-213ENST00000572334 Q6ZTI0 123 aa4.62□□□□□ -1.67
VPS53-213ENST00000572334 ATOH7Q8N100 152 aa4.62□□□□□ -1.67
VPS53-213ENST00000572334 Q8N1X5 172 aa4.62□□□□□ -1.67
VPS53-213ENST00000572334 FAM19A2Q8N3H0 131 aa4.62□□□□□ -1.67
VPS53-213ENST00000572334 DAZAP1Q96EP5 407 aaKnown RBP4.62□□□□□ -1.67
VPS53-213ENST00000572334 ODF3Q96PU9 254 aa4.62□□□□□ -1.67
VPS53-213ENST00000572334 SLC25A2Q9BXI2 301 aa4.62□□□□□ -1.67
VPS53-213ENST00000572334 GTSF1LQ9H1H1 148 aa4.62□□□□□ -1.67
VPS53-213ENST00000572334 HERC1Q15751 4861 aa4.61□□□□□ -1.67
VPS53-213ENST00000572334 DNAH8Q96JB1 4490 aa4.61□□□□□ -1.67
VPS53-213ENST00000572334 TRAV12-3A0A0B4J271 114 aa4.61□□□□□ -1.67
VPS53-213ENST00000572334 IGHV1-24A0A0C4DH33 117 aa4.61□□□□□ -1.67
VPS53-213ENST00000572334 FBLL1A6NHQ2 334 aaKnown RBP4.61□□□□□ -1.67
VPS53-213ENST00000572334 KLLNB2CW77 178 aa4.61□□□□□ -1.67
VPS53-213ENST00000572334 H3BNG1 76 aa4.61□□□□□ -1.67
VPS53-213ENST00000572334 M0R3E3 92 aa4.61□□□□□ -1.67
VPS53-213ENST00000572334 COX7A2P2O60397 106 aa4.61□□□□□ -1.67
VPS53-213ENST00000572334 DAZ2Q13117 558 aaKnown RBP4.61□□□□□ -1.67
VPS53-213ENST00000572334 ERCC8Q13216 396 aa4.61□□□□□ -1.67
VPS53-213ENST00000572334 RIGQ13278 110 aa4.61□□□□□ -1.67
VPS53-213ENST00000572334 PRR9Q5T870 116 aa4.61□□□□□ -1.67
VPS53-213ENST00000572334 C10orf113Q5VZT2 155 aa4.61□□□□□ -1.67
VPS53-213ENST00000572334 OR1L4Q8NGR5 311 aa4.61□□□□□ -1.67
VPS53-213ENST00000572334 OR10J6PQ8NGY7 276 aa4.61□□□□□ -1.67
VPS53-213ENST00000572334 C18orf15Q96N68 181 aa4.61□□□□□ -1.67
VPS53-213ENST00000572334 ANAPC13Q9BS18 74 aa4.61□□□□□ -1.67
VPS53-213ENST00000572334 TMEM126AQ9H061 195 aa4.61□□□□□ -1.67
VPS53-213ENST00000572334 AP5S1Q9NUS5 200 aa4.61□□□□□ -1.67
VPS53-213ENST00000572334 ERG28Q9UKR5 140 aa4.61□□□□□ -1.67
VPS53-213ENST00000572334 FLG2Q5D862 2391 aaPredicted RBP4.61□□□□□ -1.67
VPS53-213ENST00000572334 TRBV19A0A075B6N1 114 aa4.6□□□□□ -1.67
VPS53-213ENST00000572334 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.6□□□□□ -1.67
VPS53-213ENST00000572334 H3BMG7 143 aa4.6□□□□□ -1.67
VPS53-213ENST00000572334 FUSP35637 526 aaKnown RBP eCLIP4.6□□□□□ -1.67
VPS53-213ENST00000572334 KIAA1644Q3SXP7 199 aa4.6□□□□□ -1.67
VPS53-213ENST00000572334 GAGE13Q4V321 117 aa4.6□□□□□ -1.67
VPS53-213ENST00000572334 GCSAMLQ5JQS6 135 aa4.6□□□□□ -1.67
VPS53-213ENST00000572334 S100A7AQ86SG5 101 aa4.6□□□□□ -1.67
VPS53-213ENST00000572334 MRPL53Q96EL3 112 aaKnown RBP4.6□□□□□ -1.67
VPS53-213ENST00000572334 FAM167A-AS1Q96KT0 104 aa4.6□□□□□ -1.67
VPS53-213ENST00000572334 LINC00467Q9BRT7 94 aa4.6□□□□□ -1.67
VPS53-213ENST00000572334 AGPAT4-IT1Q9H0P7 198 aa4.6□□□□□ -1.67
VPS53-213ENST00000572334 ZNF492Q9P255 531 aa4.6□□□□□ -1.67
VPS53-213ENST00000572334 KLF12Q9Y4X4 402 aa4.6□□□□□ -1.67
VPS53-213ENST00000572334 MYCBP2O75592 4640 aa4.6□□□□□ -1.67
VPS53-213ENST00000572334 TRBV20OR9-2A0A075B6H5 130 aa4.59□□□□□ -1.67
VPS53-213ENST00000572334 K7EN84 100 aa4.59□□□□□ -1.67
VPS53-213ENST00000572334 SPINK4O60575 86 aa4.59□□□□□ -1.67
VPS53-213ENST00000572334 SLC25A5P05141 298 aaKnown RBP4.59□□□□□ -1.67
VPS53-213ENST00000572334 SPINK8P0C7L1 97 aa4.59□□□□□ -1.67
VPS53-213ENST00000572334 PYYP10082 97 aa4.59□□□□□ -1.67
VPS53-213ENST00000572334 LEPP41159 167 aa4.59□□□□□ -1.67
VPS53-213ENST00000572334 ASIPP42127 132 aa4.59□□□□□ -1.67
VPS53-213ENST00000572334 LINC00315P59091 139 aa4.59□□□□□ -1.67
VPS53-213ENST00000572334 ANXA2RQ3ZCQ2 193 aa4.59□□□□□ -1.67
VPS53-213ENST00000572334 TTC32Q5I0X7 151 aa4.59□□□□□ -1.67
VPS53-213ENST00000572334 C9orf47Q6ZRZ4 202 aa4.59□□□□□ -1.67
VPS53-213ENST00000572334 EXOC3-AS1Q8N2X6 119 aa4.59□□□□□ -1.67
VPS53-213ENST00000572334 ZFAND2AQ8N6M9 145 aa4.59□□□□□ -1.67
VPS53-213ENST00000572334 PRSS3P2Q8NHM4 247 aa4.59□□□□□ -1.67
VPS53-213ENST00000572334 FMC1Q96HJ9 113 aa4.59□□□□□ -1.67
VPS53-213ENST00000572334 KRTAP9-2Q9BYQ4 174 aa4.59□□□□□ -1.67
VPS53-213ENST00000572334 TMEM14CQ9P0S9 112 aa4.59□□□□□ -1.67
VPS53-213ENST00000572334 DMBT1Q9UGM3 2413 aaPredicted RBP4.59□□□□□ -1.67
VPS53-213ENST00000572334 TNFRSF18Q9Y5U5 241 aa4.59□□□□□ -1.67
VPS53-213ENST00000572334 TRBV20-1A0A075B6N2 111 aa4.58□□□□□ -1.68
VPS53-213ENST00000572334 hDV102S1A0JD36 115 aa4.58□□□□□ -1.68
VPS53-213ENST00000572334 F2Z2F3 143 aa4.58□□□□□ -1.68
VPS53-213ENST00000572334 APOMO95445 188 aa4.58□□□□□ -1.68
VPS53-213ENST00000572334 P01737 135 aa4.58□□□□□ -1.68
VPS53-213ENST00000572334 GCSHP23434 173 aa4.58□□□□□ -1.68
VPS53-213ENST00000572334 XGP55808 180 aa4.58□□□□□ -1.68
VPS53-213ENST00000572334 Q6ZVH6 145 aa4.58□□□□□ -1.68
VPS53-213ENST00000572334 NUP35Q8NFH5 326 aa4.58□□□□□ -1.68
VPS53-213ENST00000572334 GTSF1Q8WW33 167 aa4.58□□□□□ -1.68
VPS53-213ENST00000572334 LINC00477Q96M19 166 aa4.58□□□□□ -1.68
VPS53-213ENST00000572334 MAP1LC3AQ9H492 121 aa4.58□□□□□ -1.68
VPS53-213ENST00000572334 RPP21Q9H633 154 aaKnown RBP4.58□□□□□ -1.68
VPS53-213ENST00000572334 SPANXB1Q9NS25 103 aaPredicted RBP4.58□□□□□ -1.68
VPS53-213ENST00000572334 PGPEP1Q9NXJ5 209 aa4.58□□□□□ -1.68
VPS53-213ENST00000572334 IGKV2-40A0A087WW87 121 aaPredicted RBP4.57□□□□□ -1.68
VPS53-213ENST00000572334 TRGV1A0A0A0MS02 117 aa4.57□□□□□ -1.68
VPS53-213ENST00000572334 TRBV7-9A0A0J9YWB2 115 aa4.57□□□□□ -1.68
VPS53-213ENST00000572334 A0A1B0GXF2 115 aa4.57□□□□□ -1.68
VPS53-213ENST00000572334 GAGE12JA6NER3 117 aa4.57□□□□□ -1.68
VPS53-213ENST00000572334 HIGD1CA8MV81 97 aa4.57□□□□□ -1.68
VPS53-213ENST00000572334 ATP5LO75964 103 aa4.57□□□□□ -1.68
VPS53-213ENST00000572334 IGKV2D-40P01614 121 aaPredicted RBP4.57□□□□□ -1.68
VPS53-213ENST00000572334 GAGE4Q13068 117 aa4.57□□□□□ -1.68
VPS53-213ENST00000572334 PDE6HQ13956 83 aa4.57□□□□□ -1.68
VPS53-213ENST00000572334 FHL2Q14192 279 aa4.57□□□□□ -1.68
VPS53-213ENST00000572334 TWIST1Q15672 202 aa4.57□□□□□ -1.68
VPS53-213ENST00000572334 MRPL23Q16540 153 aaKnown RBP4.57□□□□□ -1.68
VPS53-213ENST00000572334 Q6Q795 121 aa4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms