RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 DEFB112Q30KQ8 113 aa7.91□□□□□ -1.14
CCDC40-207ENST00000572253 SETD2Q9BYW2 2564 aaPredicted RBP7.91□□□□□ -1.14
CCDC40-207ENST00000572253 ELANEP08246 267 aa7.91□□□□□ -1.14
CCDC40-207ENST00000572253 ZNF415Q09FC8 603 aa7.91□□□□□ -1.14
CCDC40-207ENST00000572253 TRBV10-2A0A0K0K1G8 114 aa7.91□□□□□ -1.14
CCDC40-207ENST00000572253 DSCR9P59020 149 aa7.91□□□□□ -1.14
CCDC40-207ENST00000572253 C10orf99Q6UWK7 81 aa7.91□□□□□ -1.14
CCDC40-207ENST00000572253 TRAV8-4A0A0B4J246 113 aa7.9□□□□□ -1.14
CCDC40-207ENST00000572253 TRAV8-3A0A0A6YYJ7 113 aa7.9□□□□□ -1.14
CCDC40-207ENST00000572253 TINCRA0A1B0GVN0 87 aa7.9□□□□□ -1.14
CCDC40-207ENST00000572253 KNCNA6PVL3 124 aa7.9□□□□□ -1.14
CCDC40-207ENST00000572253 AVPP01185 164 aa7.9□□□□□ -1.14
CCDC40-207ENST00000572253 HOXD3P31249 432 aaPredicted RBP7.9□□□□□ -1.14
CCDC40-207ENST00000572253 RNF152Q8N8N0 203 aa7.9□□□□□ -1.14
CCDC40-207ENST00000572253 SPANXDQ9BXN6 97 aa7.9□□□□□ -1.14
CCDC40-207ENST00000572253 SPANXCQ9NY87 97 aa7.9□□□□□ -1.14
CCDC40-207ENST00000572253 EIF4EBP3O60516 100 aaPredicted RBP7.9□□□□□ -1.15
CCDC40-207ENST00000572253 C2orf82Q6UX34 121 aa7.9□□□□□ -1.15
CCDC40-207ENST00000572253 ICOSQ9Y6W8 199 aa7.9□□□□□ -1.15
CCDC40-207ENST00000572253 SORL1Q92673 2214 aa7.9□□□□□ -1.15
CCDC40-207ENST00000572253 H3BMM0 161 aa7.89□□□□□ -1.15
CCDC40-207ENST00000572253 DEFB131AP59861 70 aa7.89□□□□□ -1.15
CCDC40-207ENST00000572253 MIAQ16674 131 aa7.89□□□□□ -1.15
CCDC40-207ENST00000572253 UBE2WQ96B02 151 aa7.89□□□□□ -1.15
CCDC40-207ENST00000572253 TRIAP1O43715 76 aa7.89□□□□□ -1.15
CCDC40-207ENST00000572253 DGAT2L7PQ6IED9 249 aa7.89□□□□□ -1.15
CCDC40-207ENST00000572253 RNASE13Q5GAN3 156 aaKnown RBP7.89□□□□□ -1.15
CCDC40-207ENST00000572253 CEMP1Q6PRD7 247 aaPredicted RBP7.89□□□□□ -1.15
CCDC40-207ENST00000572253 VSIG2Q96IQ7 327 aa7.89□□□□□ -1.15
CCDC40-207ENST00000572253 CIRBPQ14011 172 aaKnown RBP7.88□□□□□ -1.15
CCDC40-207ENST00000572253 PIK3CD-AS1Q5SR53 167 aa7.88□□□□□ -1.15
CCDC40-207ENST00000572253 LINC01356Q8N9X3 169 aa7.88□□□□□ -1.15
CCDC40-207ENST00000572253 UBE2E2Q96LR5 201 aa7.88□□□□□ -1.15
CCDC40-207ENST00000572253 IFITM1P13164 125 aa7.88□□□□□ -1.15
CCDC40-207ENST00000572253 PROK1P58294 105 aa7.87□□□□□ -1.15
CCDC40-207ENST00000572253 DNAJC30Q96LL9 226 aa7.87□□□□□ -1.15
CCDC40-207ENST00000572253 PRRC2AP48634 2157 aaKnown RBP7.87□□□□□ -1.15
CCDC40-207ENST00000572253 H3BT86 120 aa7.87□□□□□ -1.15
CCDC40-207ENST00000572253 RNF183Q96D59 192 aa7.87□□□□□ -1.15
CCDC40-207ENST00000572253 J3QLI3 93 aa7.87□□□□□ -1.15
CCDC40-207ENST00000572253 LINC01587Q99440 93 aa7.87□□□□□ -1.15
CCDC40-207ENST00000572253 LITAFQ99732 161 aa7.87□□□□□ -1.15
CCDC40-207ENST00000572253 NPC2P61916 151 aa7.86□□□□□ -1.15
CCDC40-207ENST00000572253 PRORYQ9H606 182 aa7.86□□□□□ -1.15
CCDC40-207ENST00000572253 VPREB3Q9UKI3 123 aa7.86□□□□□ -1.15
CCDC40-207ENST00000572253 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.86□□□□□ -1.15
CCDC40-207ENST00000572253 IGKV2-29A2NJV5 120 aaPredicted RBP7.86□□□□□ -1.15
CCDC40-207ENST00000572253 TIMM17BO60830 172 aa7.86□□□□□ -1.15
CCDC40-207ENST00000572253 UBE2D4Q9Y2X8 147 aa7.86□□□□□ -1.15
CCDC40-207ENST00000572253 RBMY1A1P0DJD3 496 aaKnown RBP7.86□□□□□ -1.15
CCDC40-207ENST00000572253 RBMY1CP0DJD4 496 aa7.86□□□□□ -1.15
CCDC40-207ENST00000572253 HERV-K104P63124 156 aa7.86□□□□□ -1.15
CCDC40-207ENST00000572253 RBMY1FQ15415 496 aaKnown RBP7.86□□□□□ -1.15
CCDC40-207ENST00000572253 LINC01600Q96MT4 127 aa7.86□□□□□ -1.15
CCDC40-207ENST00000572253 USP9YO00507 2555 aaPredicted RBP7.86□□□□□ -1.15
CCDC40-207ENST00000572253 ADAMTSL4-AS1Q5T5F5 129 aa7.86□□□□□ -1.15
CCDC40-207ENST00000572253 COPS9Q8WXC6 57 aa7.86□□□□□ -1.15
CCDC40-207ENST00000572253 CHCHD7Q9BUK0 85 aa7.86□□□□□ -1.15
CCDC40-207ENST00000572253 PEMTQ9UBM1 199 aa7.86□□□□□ -1.15
CCDC40-207ENST00000572253 TEX49A0A1B0GTD5 131 aa7.85□□□□□ -1.15
CCDC40-207ENST00000572253 RELNP78509 3460 aa7.85□□□□□ -1.15
CCDC40-207ENST00000572253 DYNLRB2Q8TF09 96 aa7.85□□□□□ -1.15
CCDC40-207ENST00000572253 ASH1LQ9NR48 2969 aaKnown RBP7.85□□□□□ -1.15
CCDC40-207ENST00000572253 TMEM61Q8N0U2 210 aa7.85□□□□□ -1.15
CCDC40-207ENST00000572253 LINC00467Q9BRT7 94 aa7.85□□□□□ -1.15
CCDC40-207ENST00000572253 INSP01308 110 aa7.84□□□□□ -1.15
CCDC40-207ENST00000572253 IGHV3-53P01767 116 aa7.84□□□□□ -1.15
CCDC40-207ENST00000572253 OR13C6PQ8NH95 151 aa7.84□□□□□ -1.15
CCDC40-207ENST00000572253 C2CD3Q4AC94 2353 aa7.84□□□□□ -1.15
CCDC40-207ENST00000572253 IGHV3-38A0A0C4DH36 116 aa7.84□□□□□ -1.16
CCDC40-207ENST00000572253 TIRAPP58753 221 aa7.84□□□□□ -1.16
CCDC40-207ENST00000572253 C15orf53Q8NAA6 179 aa7.84□□□□□ -1.16
CCDC40-207ENST00000572253 ZFYVE26Q68DK2 2539 aa7.84□□□□□ -1.16
CCDC40-207ENST00000572253 SLURP1P55000 103 aa7.83□□□□□ -1.16
CCDC40-207ENST00000572253 FAM104AQ969W3 186 aa7.83□□□□□ -1.16
CCDC40-207ENST00000572253 H7C423 109 aa7.83□□□□□ -1.16
CCDC40-207ENST00000572253 NDUFA1O15239 70 aa7.83□□□□□ -1.16
CCDC40-207ENST00000572253 GAGE5Q13069 117 aa7.83□□□□□ -1.16
CCDC40-207ENST00000572253 GAGE6Q13070 117 aa7.83□□□□□ -1.16
CCDC40-207ENST00000572253 A8MZ25 164 aa7.83□□□□□ -1.16
CCDC40-207ENST00000572253 LST1O00453 97 aa7.83□□□□□ -1.16
CCDC40-207ENST00000572253 CLEC2BQ92478 149 aa7.83□□□□□ -1.16
CCDC40-207ENST00000572253 NAV2Q8IVL1 2488 aa7.82□□□□□ -1.16
CCDC40-207ENST00000572253 A8MTW9 85 aa7.82□□□□□ -1.16
CCDC40-207ENST00000572253 HERVK_113P63121 156 aa7.82□□□□□ -1.16
CCDC40-207ENST00000572253 Q6Q795 121 aa7.82□□□□□ -1.16
CCDC40-207ENST00000572253 Q6ZSN1 163 aa7.82□□□□□ -1.16
CCDC40-207ENST00000572253 ZNF702PQ9H963 129 aa7.82□□□□□ -1.16
CCDC40-207ENST00000572253 CDKN2A-AS1Q9UH64 79 aa7.82□□□□□ -1.16
CCDC40-207ENST00000572253 USP9XQ93008 2570 aaPredicted RBP7.82□□□□□ -1.16
CCDC40-207ENST00000572253 TRAV4A0A0B4J268 109 aa7.82□□□□□ -1.16
CCDC40-207ENST00000572253 MRPL23Q16540 153 aaKnown RBP7.82□□□□□ -1.16
CCDC40-207ENST00000572253 NDUFV3P56181 108 aaKnown RBP7.81□□□□□ -1.16
CCDC40-207ENST00000572253 RBMY1BA6NDE4 496 aaKnown RBP7.81□□□□□ -1.16
CCDC40-207ENST00000572253 RBMY1EA6NEQ0 496 aaKnown RBP7.81□□□□□ -1.16
CCDC40-207ENST00000572253 RBMY1DP0C7P1 496 aaKnown RBP7.81□□□□□ -1.16
CCDC40-207ENST00000572253 DEFB136Q30KP8 78 aa7.81□□□□□ -1.16
CCDC40-207ENST00000572253 RS1O15537 224 aa7.81□□□□□ -1.16
CCDC40-207ENST00000572253 PRM2P04554 102 aa7.81□□□□□ -1.16
CCDC40-207ENST00000572253 TMEM101Q96IK0 257 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms