RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 IQCJQ1A5X6 159 aa14.02□□□□□ -0.17
VPS53-210ENST00000571456 ORMDL3Q8N138 153 aa14.02□□□□□ -0.17
VPS53-210ENST00000571456 RPL39LQ96EH5 51 aaKnown RBP14.02□□□□□ -0.17
VPS53-210ENST00000571456 URGCP-MRPS24S4R325 110 aa14.02□□□□□ -0.17
VPS53-210ENST00000571456 IGHV1-24A0A0C4DH33 117 aa14.01□□□□□ -0.17
VPS53-210ENST00000571456 I3L3M4 83 aa14.01□□□□□ -0.17
VPS53-210ENST00000571456 TCAPO15273 167 aa14.01□□□□□ -0.17
VPS53-210ENST00000571456 MT-ND6P03923 174 aa14.01□□□□□ -0.17
VPS53-210ENST00000571456 RPL32P62910 135 aaKnown RBP14.01□□□□□ -0.17
VPS53-210ENST00000571456 GNB1LQ9BYB4 327 aa14.01□□□□□ -0.17
VPS53-210ENST00000571456 TRBV27A0A0K0K1C4 114 aa14□□□□□ -0.17
VPS53-210ENST00000571456 POLR2KP53803 58 aaKnown RBP14□□□□□ -0.17
VPS53-210ENST00000571456 SUMO2P61956 95 aaKnown RBP14□□□□□ -0.17
VPS53-210ENST00000571456 MAPKAPK5-AS1Q8N8E1 139 aa14□□□□□ -0.17
VPS53-210ENST00000571456 NRACQ8N912 160 aa14□□□□□ -0.17
VPS53-210ENST00000571456 TMEM70Q9BUB7 260 aa14□□□□□ -0.17
VPS53-210ENST00000571456 D6R8Y8 96 aa13.99□□□□□ -0.17
VPS53-210ENST00000571456 VCYO14598 125 aa13.99□□□□□ -0.17
VPS53-210ENST00000571456 PMCHP20382 165 aa13.98□□□□□ -0.17
VPS53-210ENST00000571456 RPS10P46783 165 aaKnown RBP13.98□□□□□ -0.17
VPS53-210ENST00000571456 ELOBQ15370 118 aa13.98□□□□□ -0.17
VPS53-210ENST00000571456 TMEM136Q6ZRR5 245 aa13.98□□□□□ -0.17
VPS53-210ENST00000571456 NIT1Q86X76 327 aa13.98□□□□□ -0.17
VPS53-210ENST00000571456 A0A087WX48 190 aa13.97□□□□□ -0.17
VPS53-210ENST00000571456 TNFRSF6BO95407 300 aa13.97□□□□□ -0.17
VPS53-210ENST00000571456 NTM-AS1Q6ZSK4 140 aa13.97□□□□□ -0.17
VPS53-210ENST00000571456 CHCHD5Q9BSY4 110 aa13.97□□□□□ -0.17
VPS53-210ENST00000571456 TMEM243Q9BU79 118 aa13.97□□□□□ -0.17
VPS53-210ENST00000571456 H7C423 109 aa13.96□□□□□ -0.17
VPS53-210ENST00000571456 M0R2N4 97 aa13.96□□□□□ -0.17
VPS53-210ENST00000571456 CDK2AP2O75956 126 aa13.96□□□□□ -0.17
VPS53-210ENST00000571456 APCSP02743 223 aa13.96□□□□□ -0.17
VPS53-210ENST00000571456 AMTP48728 403 aa13.96□□□□□ -0.17
VPS53-210ENST00000571456 LAGE3Q14657 143 aa13.96□□□□□ -0.17
VPS53-210ENST00000571456 C1orf134Q5TEV5 83 aa13.96□□□□□ -0.17
VPS53-210ENST00000571456 NFE4Q86UQ8 179 aa13.96□□□□□ -0.17
VPS53-210ENST00000571456 PRELID3AQ96N28 172 aa13.96□□□□□ -0.17
VPS53-210ENST00000571456 KIR2DL4Q99706 377 aa13.96□□□□□ -0.17
VPS53-210ENST00000571456 SMCO4Q9NRQ5 59 aa13.96□□□□□ -0.17
VPS53-210ENST00000571456 SMKR1H3BMG3 65 aa13.95□□□□□ -0.18
VPS53-210ENST00000571456 GAS8-AS1O95177 125 aa13.95□□□□□ -0.18
VPS53-210ENST00000571456 PRSS47A8MTI9 375 aa13.94□□□□□ -0.18
VPS53-210ENST00000571456 C6orf223Q8N319 242 aa13.94□□□□□ -0.18
VPS53-210ENST00000571456 IBA57-AS1B1ANH7 110 aa13.93□□□□□ -0.18
VPS53-210ENST00000571456 TMEM262E9PQX1 116 aa13.93□□□□□ -0.18
VPS53-210ENST00000571456 UBE2L6O14933 153 aa13.93□□□□□ -0.18
VPS53-210ENST00000571456 SMAGPQ0VAQ4 97 aa13.93□□□□□ -0.18
VPS53-210ENST00000571456 A0A1B0GUV1 79 aa13.92□□□□□ -0.18
VPS53-210ENST00000571456 NPYP01303 97 aa13.92□□□□□ -0.18
VPS53-210ENST00000571456 SMIM2Q9BVW6 85 aa13.92□□□□□ -0.18
VPS53-210ENST00000571456 FCER1GP30273 86 aa13.91□□□□□ -0.18
VPS53-210ENST00000571456 ATRAIDQ6UW56 229 aa13.91□□□□□ -0.18
VPS53-210ENST00000571456 Q8N1X5 172 aa13.91□□□□□ -0.18
VPS53-210ENST00000571456 KRTAP1-5Q9BYS1 174 aa13.91□□□□□ -0.18
VPS53-210ENST00000571456 MAP1LC3AQ9H492 121 aa13.91□□□□□ -0.18
VPS53-210ENST00000571456 APOBP04114 4563 aaKnown RBP13.91□□□□□ -0.18
VPS53-210ENST00000571456 LRP1BQ9NZR2 4599 aa13.91□□□□□ -0.18
VPS53-210ENST00000571456 TRAV8-3A0A0A6YYJ7 113 aa13.9□□□□□ -0.18
VPS53-210ENST00000571456 K7EMI3 77 aa13.9□□□□□ -0.18
VPS53-210ENST00000571456 TSHBP01222 138 aa13.9□□□□□ -0.18
VPS53-210ENST00000571456 IGHV3-30P01768 117 aa13.9□□□□□ -0.18
VPS53-210ENST00000571456 IGHV3-33P01772 117 aa13.9□□□□□ -0.18
VPS53-210ENST00000571456 IGHV3-30-3P0DP02 117 aa13.9□□□□□ -0.18
VPS53-210ENST00000571456 IGHV3-30-5P0DP03 117 aa13.9□□□□□ -0.18
VPS53-210ENST00000571456 TGIF2-C20orf24A0A0A6YYL0 155 aa13.89□□□□□ -0.19
VPS53-210ENST00000571456 TMEM18Q96B42 140 aa13.89□□□□□ -0.19
VPS53-210ENST00000571456 ESDP10768 282 aa13.88□□□□□ -0.19
VPS53-210ENST00000571456 ZNF25P17030 456 aaPredicted RBP13.88□□□□□ -0.19
VPS53-210ENST00000571456 Q0VG73 95 aa13.88□□□□□ -0.19
VPS53-210ENST00000571456 YPEL4Q96NS1 127 aa13.88□□□□□ -0.19
VPS53-210ENST00000571456 MRPL18Q9H0U6 180 aaKnown RBP13.88□□□□□ -0.19
VPS53-210ENST00000571456 GAGE6Q13070 117 aa13.87□□□□□ -0.19
VPS53-210ENST00000571456 MPV17L2Q567V2 206 aa13.87□□□□□ -0.19
VPS53-210ENST00000571456 RMI2Q96E14 147 aa13.87□□□□□ -0.19
VPS53-210ENST00000571456 TRAPPC1Q9Y5R8 145 aa13.87□□□□□ -0.19
VPS53-210ENST00000571456 COX11Q9Y6N1 276 aa13.87□□□□□ -0.19
VPS53-210ENST00000571456 RAB5AP20339 215 aa13.86□□□□□ -0.19
VPS53-210ENST00000571456 RBX1P62877 108 aa13.86□□□□□ -0.19
VPS53-210ENST00000571456 FABP9Q0Z7S8 132 aa13.86□□□□□ -0.19
VPS53-210ENST00000571456 NXT2Q9NPJ8 142 aaKnown RBP13.86□□□□□ -0.19
VPS53-210ENST00000571456 AMMECR1LQ6DCA0 310 aa13.85□□□□□ -0.19
VPS53-210ENST00000571456 Q8N8P6 123 aa13.85□□□□□ -0.19
VPS53-210ENST00000571456 TM2D2Q9BX73 214 aa13.85□□□□□ -0.19
VPS53-210ENST00000571456 C16orf90A8MZG2 172 aa13.84□□□□□ -0.19
VPS53-210ENST00000571456 CRPP02741 224 aa13.84□□□□□ -0.19
VPS53-210ENST00000571456 ANGP03950 147 aaKnown RBP13.84□□□□□ -0.19
VPS53-210ENST00000571456 G0S2P27469 103 aa13.84□□□□□ -0.19
VPS53-210ENST00000571456 MRPL52Q86TS9 123 aaKnown RBP13.84□□□□□ -0.19
VPS53-210ENST00000571456 CBLN2Q8IUK8 224 aa13.84□□□□□ -0.19
VPS53-210ENST00000571456 KLK12Q9UKR0 248 aa13.84□□□□□ -0.19
VPS53-210ENST00000571456 S100A1P23297 94 aa13.83□□□□□ -0.2
VPS53-210ENST00000571456 TMEM101Q96IK0 257 aa13.83□□□□□ -0.2
VPS53-210ENST00000571456 ALKBH7Q9BT30 221 aaPredicted RBP13.83□□□□□ -0.2
VPS53-210ENST00000571456 CSDC2Q9Y534 153 aaKnown RBP13.83□□□□□ -0.2
VPS53-210ENST00000571456 FGF6P10767 208 aa13.82□□□□□ -0.2
VPS53-210ENST00000571456 MIAQ16674 131 aa13.82□□□□□ -0.2
VPS53-210ENST00000571456 KIAA1644Q3SXP7 199 aa13.82□□□□□ -0.2
VPS53-210ENST00000571456 Q8N3U1 123 aa13.82□□□□□ -0.2
VPS53-210ENST00000571456 Q8N976 141 aa13.82□□□□□ -0.2
VPS53-210ENST00000571456 C20orf203Q8NBC4 194 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms