RNA–Protein interactions for RNA: ENST00000569117.1

CDH3-210, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 576 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-210ENST00000569117 SDHAF1A6NFY7 115 aa7.23□□□□□ -1.25
CDH3-210ENST00000569117 C3orf84H3BNL1 204 aa7.23□□□□□ -1.25
CDH3-210ENST00000569117 NUDT3O95989 172 aa7.23□□□□□ -1.25
CDH3-210ENST00000569117 TRGC2P03986 189 aa7.23□□□□□ -1.25
CDH3-210ENST00000569117 RPL32P62910 135 aaKnown RBP7.23□□□□□ -1.25
CDH3-210ENST00000569117 NEGR1Q7Z3B1 354 aa7.23□□□□□ -1.25
CDH3-210ENST00000569117 DAZ4Q86SG3 579 aaKnown RBP7.23□□□□□ -1.25
CDH3-210ENST00000569117 TMEM70Q9BUB7 260 aa7.23□□□□□ -1.25
CDH3-210ENST00000569117 SMIM2Q9BVW6 85 aa7.23□□□□□ -1.25
CDH3-210ENST00000569117 DAZ3Q9NR90 486 aaKnown RBP7.23□□□□□ -1.25
CDH3-210ENST00000569117 TRBV27A0A0K0K1C4 114 aa7.22□□□□□ -1.25
CDH3-210ENST00000569117 POLR2KP53803 58 aaKnown RBP7.22□□□□□ -1.25
CDH3-210ENST00000569117 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.22□□□□□ -1.25
CDH3-210ENST00000569117 ATP6V0E2Q8NHE4 81 aa7.22□□□□□ -1.25
CDH3-210ENST00000569117 MAP1LC3AQ9H492 121 aa7.22□□□□□ -1.25
CDH3-210ENST00000569117 APLNQ9ULZ1 77 aa7.22□□□□□ -1.25
CDH3-210ENST00000569117 CASC10Q5T4H9 136 aa7.21□□□□□ -1.26
CDH3-210ENST00000569117 GTSF1LQ9H1H1 148 aa7.21□□□□□ -1.26
CDH3-210ENST00000569117 IGHV3-38A0A0C4DH36 116 aa7.2□□□□□ -1.26
CDH3-210ENST00000569117 KRTAP23-1A1A580 65 aa7.2□□□□□ -1.26
CDH3-210ENST00000569117 I3L3M4 83 aa7.2□□□□□ -1.26
CDH3-210ENST00000569117 PMCHP20382 165 aa7.2□□□□□ -1.26
CDH3-210ENST00000569117 TMEM97Q5BJF2 176 aa7.2□□□□□ -1.26
CDH3-210ENST00000569117 C18orf32Q8TCD1 76 aa7.2□□□□□ -1.26
CDH3-210ENST00000569117 TENM2Q9NT68 2774 aa7.2□□□□□ -1.26
CDH3-210ENST00000569117 IGLV2-18A0A075B6J9 118 aa7.19□□□□□ -1.26
CDH3-210ENST00000569117 VCYO14598 125 aa7.19□□□□□ -1.26
CDH3-210ENST00000569117 TSHBP01222 138 aa7.19□□□□□ -1.26
CDH3-210ENST00000569117 COTL1Q14019 142 aa7.19□□□□□ -1.26
CDH3-210ENST00000569117 LYPD5Q6UWN5 251 aa7.19□□□□□ -1.26
CDH3-210ENST00000569117 KIR2DL4Q99706 377 aa7.19□□□□□ -1.26
CDH3-210ENST00000569117 NXT2Q9NPJ8 142 aaKnown RBP7.19□□□□□ -1.26
CDH3-210ENST00000569117 TRBV6-8A0A0A6YYG3 113 aa7.18□□□□□ -1.26
CDH3-210ENST00000569117 K7EMI3 77 aa7.18□□□□□ -1.26
CDH3-210ENST00000569117 PRYO14603 147 aa7.18□□□□□ -1.26
CDH3-210ENST00000569117 TCAPO15273 167 aa7.18□□□□□ -1.26
CDH3-210ENST00000569117 IQCJQ1A5X6 159 aa7.18□□□□□ -1.26
CDH3-210ENST00000569117 ESRGQ1W209 222 aa7.18□□□□□ -1.26
CDH3-210ENST00000569117 LELP1Q5T871 98 aa7.18□□□□□ -1.26
CDH3-210ENST00000569117 NTM-AS1Q6ZSK4 140 aa7.18□□□□□ -1.26
CDH3-210ENST00000569117 Q8N8P6 123 aa7.18□□□□□ -1.26
CDH3-210ENST00000569117 PLECQ15149 4684 aaKnown RBP7.17□□□□□ -1.26
CDH3-210ENST00000569117 TRBV25-1A0A075B6N4 114 aa7.17□□□□□ -1.26
CDH3-210ENST00000569117 LOC389332A0A1B0GUA5 103 aa7.17□□□□□ -1.26
CDH3-210ENST00000569117 LINC01546A6NGU7 62 aa7.17□□□□□ -1.26
CDH3-210ENST00000569117 HIST1H2BKO60814 126 aa7.17□□□□□ -1.26
CDH3-210ENST00000569117 HIST1H2BJP06899 126 aa7.17□□□□□ -1.26
CDH3-210ENST00000569117 HIST1H2BOP23527 126 aa7.17□□□□□ -1.26
CDH3-210ENST00000569117 FCER1GP30273 86 aa7.17□□□□□ -1.26
CDH3-210ENST00000569117 HIST1H2BBP33778 126 aa7.17□□□□□ -1.26
CDH3-210ENST00000569117 IFI27P40305 119 aaPredicted RBP7.17□□□□□ -1.26
CDH3-210ENST00000569117 AMTP48728 403 aa7.17□□□□□ -1.26
CDH3-210ENST00000569117 CCL18P55774 89 aa7.17□□□□□ -1.26
CDH3-210ENST00000569117 HIST1H2BDP58876 126 aa7.17□□□□□ -1.26
CDH3-210ENST00000569117 HIST1H2BCP62807 126 aa7.17□□□□□ -1.26
CDH3-210ENST00000569117 HIST2H2BEQ16778 126 aa7.17□□□□□ -1.26
CDH3-210ENST00000569117 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.17□□□□□ -1.26
CDH3-210ENST00000569117 HIST1H2BHQ93079 126 aa7.17□□□□□ -1.26
CDH3-210ENST00000569117 HIST1H2BNQ99877 126 aa7.17□□□□□ -1.26
CDH3-210ENST00000569117 HIST1H2BMQ99879 126 aa7.17□□□□□ -1.26
CDH3-210ENST00000569117 MRPS16Q9Y3D3 137 aaKnown RBP7.17□□□□□ -1.26
CDH3-210ENST00000569117 IGHV1-24A0A0C4DH33 117 aa7.16□□□□□ -1.26
CDH3-210ENST00000569117 C1orf196B1AJZ1 125 aa7.16□□□□□ -1.26
CDH3-210ENST00000569117 Q0VG73 95 aa7.16□□□□□ -1.26
CDH3-210ENST00000569117 SERTAD4-AS1Q5TG53 156 aa7.16□□□□□ -1.26
CDH3-210ENST00000569117 PRSS3P2Q8NHM4 247 aa7.16□□□□□ -1.26
CDH3-210ENST00000569117 URB1-AS1Q96HZ7 61 aa7.16□□□□□ -1.26
CDH3-210ENST00000569117 UPK3BQ9BT76 320 aa7.16□□□□□ -1.26
CDH3-210ENST00000569117 LINC00588Q9Y4M8 146 aa7.16□□□□□ -1.26
CDH3-210ENST00000569117 ESDP10768 282 aa7.15□□□□□ -1.26
CDH3-210ENST00000569117 RAB5BP61020 215 aa7.15□□□□□ -1.26
CDH3-210ENST00000569117 FA2HQ7L5A8 372 aa7.15□□□□□ -1.26
CDH3-210ENST00000569117 DEFB104AQ8WTQ1 72 aa7.15□□□□□ -1.26
CDH3-210ENST00000569117 LYSTQ99698 3801 aa7.15□□□□□ -1.26
CDH3-210ENST00000569117 TMEM243Q9BU79 118 aa7.15□□□□□ -1.26
CDH3-210ENST00000569117 CHCHD7Q9BUK0 85 aa7.15□□□□□ -1.26
CDH3-210ENST00000569117 TRAV8-6A0A0B4J262 113 aa7.14□□□□□ -1.27
CDH3-210ENST00000569117 ORMDL2Q53FV1 153 aa7.14□□□□□ -1.27
CDH3-210ENST00000569117 WFDC10BQ8IUB3 73 aa7.14□□□□□ -1.27
CDH3-210ENST00000569117 UBE2DNLQ8IWF7 75 aa7.14□□□□□ -1.27
CDH3-210ENST00000569117 H7C423 109 aa7.13□□□□□ -1.27
CDH3-210ENST00000569117 NPSP0C0P6 89 aa7.13□□□□□ -1.27
CDH3-210ENST00000569117 LINC00614P0C842 121 aa7.13□□□□□ -1.27
CDH3-210ENST00000569117 PKIAP61925 76 aa7.13□□□□□ -1.27
CDH3-210ENST00000569117 LAGE3Q14657 143 aa7.13□□□□□ -1.27
CDH3-210ENST00000569117 LGALS9CQ6DKI2 356 aa7.13□□□□□ -1.27
CDH3-210ENST00000569117 RNASEKQ6P5S7 137 aaKnown RBP7.13□□□□□ -1.27
CDH3-210ENST00000569117 NIT1Q86X76 327 aa7.13□□□□□ -1.27
CDH3-210ENST00000569117 BAGE3Q86Y29 109 aa7.13□□□□□ -1.27
CDH3-210ENST00000569117 C20orf203Q8NBC4 194 aa7.13□□□□□ -1.27
CDH3-210ENST00000569117 CHCHD1Q96BP2 118 aaKnown RBP7.13□□□□□ -1.27
CDH3-210ENST00000569117 CHCHD5Q9BSY4 110 aa7.13□□□□□ -1.27
CDH3-210ENST00000569117 SERF1AO75920 110 aa7.12□□□□□ -1.27
CDH3-210ENST00000569117 COA6Q5JTJ3 125 aaKnown RBP7.12□□□□□ -1.27
CDH3-210ENST00000569117 LINC00476Q8WZB0 136 aa7.12□□□□□ -1.27
CDH3-210ENST00000569117 ALMS1Q8TCU4 4167 aa7.12□□□□□ -1.27
CDH3-210ENST00000569117 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.11□□□□□ -1.27
CDH3-210ENST00000569117 A0A096LNJ9 63 aa7.11□□□□□ -1.27
CDH3-210ENST00000569117 IGKV2-29A2NJV5 120 aaPredicted RBP7.11□□□□□ -1.27
CDH3-210ENST00000569117 USP17L23D6RBM5 183 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms