RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 RIGQ13278 110 aa9.24□□□□□ -0.93
CLN3-235ENST00000568497 SMIM15Q7Z3B0 74 aa9.24□□□□□ -0.93
CLN3-235ENST00000568497 NAT8BQ9UHF3 227 aa9.24□□□□□ -0.93
CLN3-235ENST00000568497 TMEM218A2RU14 115 aa9.23□□□□□ -0.93
CLN3-235ENST00000568497 F8W036 122 aa9.23□□□□□ -0.93
CLN3-235ENST00000568497 H7C1H1 209 aa9.23□□□□□ -0.93
CLN3-235ENST00000568497 ATRAIDQ6UW56 229 aa9.23□□□□□ -0.93
CLN3-235ENST00000568497 UBE2WQ96B02 151 aa9.23□□□□□ -0.93
CLN3-235ENST00000568497 A0A087WWC5 75 aa9.22□□□□□ -0.93
CLN3-235ENST00000568497 K7EP13 123 aa9.22□□□□□ -0.93
CLN3-235ENST00000568497 MRPL51Q4U2R6 128 aaKnown RBP9.22□□□□□ -0.93
CLN3-235ENST00000568497 TMEM191AQ9H0A3 160 aa9.22□□□□□ -0.93
CLN3-235ENST00000568497 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.21□□□□□ -0.94
CLN3-235ENST00000568497 A0A087WTM6 91 aa9.21□□□□□ -0.94
CLN3-235ENST00000568497 A0A087WX48 190 aa9.21□□□□□ -0.94
CLN3-235ENST00000568497 IGKV2-29A2NJV5 120 aaPredicted RBP9.21□□□□□ -0.94
CLN3-235ENST00000568497 RBX1P62877 108 aa9.21□□□□□ -0.94
CLN3-235ENST00000568497 TMEM242Q9NWH2 141 aa9.21□□□□□ -0.94
CLN3-235ENST00000568497 URGCP-MRPS24S4R325 110 aa9.21□□□□□ -0.94
CLN3-235ENST00000568497 IGLV4-60A0A075B6I1 120 aa9.2□□□□□ -0.94
CLN3-235ENST00000568497 IGHV1-24A0A0C4DH33 117 aa9.2□□□□□ -0.94
CLN3-235ENST00000568497 FAM231BA6NCW3 169 aa9.2□□□□□ -0.94
CLN3-235ENST00000568497 SDHAF1A6NFY7 115 aa9.2□□□□□ -0.94
CLN3-235ENST00000568497 ANGP03950 147 aaKnown RBP9.2□□□□□ -0.94
CLN3-235ENST00000568497 ENHOQ6UWT2 76 aa9.2□□□□□ -0.94
CLN3-235ENST00000568497 C10orf126Q8N4M7 172 aa9.2□□□□□ -0.94
CLN3-235ENST00000568497 TRBV25-1A0A075B6N4 114 aa9.19□□□□□ -0.94
CLN3-235ENST00000568497 IGKV2D-24A0A075B6R9 120 aa9.19□□□□□ -0.94
CLN3-235ENST00000568497 A0A1B0GXF2 115 aa9.19□□□□□ -0.94
CLN3-235ENST00000568497 LINC00862A6NCI5 91 aa9.19□□□□□ -0.94
CLN3-235ENST00000568497 PSCAO43653 123 aa9.19□□□□□ -0.94
CLN3-235ENST00000568497 GCSHP23434 173 aa9.19□□□□□ -0.94
CLN3-235ENST00000568497 AMTP48728 403 aa9.19□□□□□ -0.94
CLN3-235ENST00000568497 NRACQ8N912 160 aa9.19□□□□□ -0.94
CLN3-235ENST00000568497 BAALCQ8WXS3 180 aa9.19□□□□□ -0.94
CLN3-235ENST00000568497 TMEM243Q9BU79 118 aa9.19□□□□□ -0.94
CLN3-235ENST00000568497 IGLV10-54A0A075B6I4 117 aa9.18□□□□□ -0.94
CLN3-235ENST00000568497 IGKV3OR2-268A0A0C4DH90 116 aa9.18□□□□□ -0.94
CLN3-235ENST00000568497 LRCOL1A6NCL2 159 aa9.18□□□□□ -0.94
CLN3-235ENST00000568497 PLA2G1BP04054 148 aaKnown RBP9.18□□□□□ -0.94
CLN3-235ENST00000568497 COTL1Q14019 142 aa9.18□□□□□ -0.94
CLN3-235ENST00000568497 IQCJQ1A5X6 159 aa9.18□□□□□ -0.94
CLN3-235ENST00000568497 FAM104BQ5XKR9 115 aa9.18□□□□□ -0.94
CLN3-235ENST00000568497 UQCC3Q6UW78 93 aa9.18□□□□□ -0.94
CLN3-235ENST00000568497 LINC00269Q8N2A0 174 aa9.18□□□□□ -0.94
CLN3-235ENST00000568497 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.18□□□□□ -0.94
CLN3-235ENST00000568497 C20orf203Q8NBC4 194 aa9.18□□□□□ -0.94
CLN3-235ENST00000568497 TSHBP01222 138 aa9.17□□□□□ -0.94
CLN3-235ENST00000568497 MT-ND4LP03901 98 aa9.17□□□□□ -0.94
CLN3-235ENST00000568497 PMCHP20382 165 aa9.17□□□□□ -0.94
CLN3-235ENST00000568497 HBBP68871 147 aa9.17□□□□□ -0.94
CLN3-235ENST00000568497 NFE4Q86UQ8 179 aa9.17□□□□□ -0.94
CLN3-235ENST00000568497 TMEM70Q9BUB7 260 aa9.17□□□□□ -0.94
CLN3-235ENST00000568497 CHCHD7Q9BUK0 85 aa9.17□□□□□ -0.94
CLN3-235ENST00000568497 ST20Q9HBF5 79 aa9.17□□□□□ -0.94
CLN3-235ENST00000568497 D6R8Y8 96 aa9.16□□□□□ -0.94
CLN3-235ENST00000568497 NPYP01303 97 aa9.16□□□□□ -0.94
CLN3-235ENST00000568497 PNRC1Q12796 327 aaPredicted RBP9.16□□□□□ -0.94
CLN3-235ENST00000568497 KCNIP4Q6PIL6 250 aa9.16□□□□□ -0.94
CLN3-235ENST00000568497 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.15□□□□□ -0.94
CLN3-235ENST00000568497 PPP1R2P9O14990 202 aa9.15□□□□□ -0.94
CLN3-235ENST00000568497 LINC01620Q4KN68 170 aa9.15□□□□□ -0.94
CLN3-235ENST00000568497 ANAPC16Q96DE5 110 aa9.15□□□□□ -0.94
CLN3-235ENST00000568497 MRAP2Q96G30 205 aa9.15□□□□□ -0.94
CLN3-235ENST00000568497 TRBV6-5A0A0K0K1A5 114 aa9.14□□□□□ -0.95
CLN3-235ENST00000568497 I3L3M4 83 aa9.14□□□□□ -0.95
CLN3-235ENST00000568497 APCSP02743 223 aa9.14□□□□□ -0.95
CLN3-235ENST00000568497 CKS2P33552 79 aa9.14□□□□□ -0.95
CLN3-235ENST00000568497 POLR2KP53803 58 aaKnown RBP9.14□□□□□ -0.95
CLN3-235ENST00000568497 RNASEKQ6P5S7 137 aaKnown RBP9.14□□□□□ -0.95
CLN3-235ENST00000568497 SEC11CQ9BY50 192 aa9.14□□□□□ -0.95
CLN3-235ENST00000568497 TRAV8-3A0A0A6YYJ7 113 aa9.13□□□□□ -0.95
CLN3-235ENST00000568497 UBE2L6O14933 153 aa9.13□□□□□ -0.95
CLN3-235ENST00000568497 HLA-DQA1P01909 254 aa9.13□□□□□ -0.95
CLN3-235ENST00000568497 CRPP02741 224 aa9.13□□□□□ -0.95
CLN3-235ENST00000568497 RNASE13Q5GAN3 156 aaKnown RBP9.13□□□□□ -0.95
CLN3-235ENST00000568497 LOC389332A0A1B0GUA5 103 aa9.12□□□□□ -0.95
CLN3-235ENST00000568497 C7orf77A4D0Y5 90 aa9.12□□□□□ -0.95
CLN3-235ENST00000568497 TCAPO15273 167 aa9.12□□□□□ -0.95
CLN3-235ENST00000568497 TNFRSF6BO95407 300 aa9.12□□□□□ -0.95
CLN3-235ENST00000568497 LAGE3Q14657 143 aa9.12□□□□□ -0.95
CLN3-235ENST00000568497 KIAA1644Q3SXP7 199 aa9.12□□□□□ -0.95
CLN3-235ENST00000568497 TMEM97Q5BJF2 176 aa9.12□□□□□ -0.95
CLN3-235ENST00000568497 SLC7A5P1Q8MH63 180 aa9.12□□□□□ -0.95
CLN3-235ENST00000568497 FGF6P10767 208 aa9.11□□□□□ -0.95
CLN3-235ENST00000568497 SUMO2P61956 95 aaKnown RBP9.11□□□□□ -0.95
CLN3-235ENST00000568497 REG3AQ06141 175 aa9.11□□□□□ -0.95
CLN3-235ENST00000568497 C10orf91Q5T1B1 145 aa9.11□□□□□ -0.95
CLN3-235ENST00000568497 KRTAP26-1Q6PEX3 210 aa9.11□□□□□ -0.95
CLN3-235ENST00000568497 Q8N814 137 aa9.11□□□□□ -0.95
CLN3-235ENST00000568497 CLRN3Q8NCR9 226 aa9.11□□□□□ -0.95
CLN3-235ENST00000568497 IMMP2LQ96T52 175 aa9.11□□□□□ -0.95
CLN3-235ENST00000568497 RPS10P5Q9NQ39 176 aa9.11□□□□□ -0.95
CLN3-235ENST00000568497 LRP1Q07954 4544 aaKnown RBP9.1□□□□□ -0.95
CLN3-235ENST00000568497 IGLV5-52A0A0A0MRZ9 124 aa9.1□□□□□ -0.95
CLN3-235ENST00000568497 ESDP10768 282 aa9.1□□□□□ -0.95
CLN3-235ENST00000568497 AMMECR1LQ6DCA0 310 aa9.1□□□□□ -0.95
CLN3-235ENST00000568497 LINC00528Q8N1L1 170 aa9.1□□□□□ -0.95
CLN3-235ENST00000568497 C1orf43Q9BWL3 253 aa9.1□□□□□ -0.95
CLN3-235ENST00000568497 TM2D2Q9BX73 214 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms