RNA–Protein interactions for RNA: ENST00000568452.6

CLN3-233, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,616 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-233ENST00000568452 GAGE5Q13069 117 aa13.43□□□□□ -0.26
CLN3-233ENST00000568452 GAGE13Q4V321 117 aa13.43□□□□□ -0.26
CLN3-233ENST00000568452 Q6ZN92 141 aa13.43□□□□□ -0.26
CLN3-233ENST00000568452 DEFB104AQ8WTQ1 72 aa13.43□□□□□ -0.26
CLN3-233ENST00000568452 RETNQ9HD89 108 aa13.43□□□□□ -0.26
CLN3-233ENST00000568452 DNAH3Q8TD57 4116 aa13.43□□□□□ -0.26
CLN3-233ENST00000568452 C20orf203Q8NBC4 194 aa13.42□□□□□ -0.26
CLN3-233ENST00000568452 PHLDA1Q8WV24 401 aaPredicted RBP13.42□□□□□ -0.26
CLN3-233ENST00000568452 C11orf68Q9H3H3 251 aaKnown RBP13.42□□□□□ -0.26
CLN3-233ENST00000568452 PRO0255Q9UI72 69 aa13.42□□□□□ -0.26
CLN3-233ENST00000568452 CELA1Q9UNI1 258 aa13.42□□□□□ -0.26
CLN3-233ENST00000568452 PRB2P02812 416 aaPredicted RBP13.42□□□□□ -0.26
CLN3-233ENST00000568452 ATP5G1P05496 136 aa13.42□□□□□ -0.26
CLN3-233ENST00000568452 TMEM141Q96I45 108 aa13.42□□□□□ -0.26
CLN3-233ENST00000568452 VAMP8Q9BV40 100 aa13.42□□□□□ -0.26
CLN3-233ENST00000568452 DEFB121Q5J5C9 76 aa13.41□□□□□ -0.26
CLN3-233ENST00000568452 TIMM17AQ99595 171 aa13.41□□□□□ -0.26
CLN3-233ENST00000568452 ZMAT4Q9H898 229 aa13.41□□□□□ -0.26
CLN3-233ENST00000568452 IGHV3-38A0A0C4DH36 116 aa13.4□□□□□ -0.26
CLN3-233ENST00000568452 CRYBA4P53673 196 aa13.4□□□□□ -0.26
CLN3-233ENST00000568452 RPL39P62891 51 aaKnown RBP13.4□□□□□ -0.26
CLN3-233ENST00000568452 SBSPONQ8IVN8 264 aa13.4□□□□□ -0.26
CLN3-233ENST00000568452 SPATA25Q9BR10 227 aa13.4□□□□□ -0.26
CLN3-233ENST00000568452 PKD1L1Q8TDX9 2849 aa13.39□□□□□ -0.27
CLN3-233ENST00000568452 IGIPA6NJ69 53 aa13.39□□□□□ -0.27
CLN3-233ENST00000568452 TRAV12-1A0A0B4J245 112 aa13.38□□□□□ -0.27
CLN3-233ENST00000568452 LOC100131303A0A0U1RQF7 123 aa13.38□□□□□ -0.27
CLN3-233ENST00000568452 PCP4L1A6NKN8 68 aa13.38□□□□□ -0.27
CLN3-233ENST00000568452 ATOH7Q8N100 152 aa13.38□□□□□ -0.27
CLN3-233ENST00000568452 CHCHD7Q9BUK0 85 aa13.38□□□□□ -0.27
CLN3-233ENST00000568452 ODF1Q14990 250 aa13.37□□□□□ -0.27
CLN3-233ENST00000568452 GTSF1LQ9H1H1 148 aa13.37□□□□□ -0.27
CLN3-233ENST00000568452 TRAV9-2A0A087WT02 112 aa13.36□□□□□ -0.27
CLN3-233ENST00000568452 A0A087WX48 190 aa13.36□□□□□ -0.27
CLN3-233ENST00000568452 PAX4O43316 350 aa13.36□□□□□ -0.27
CLN3-233ENST00000568452 LINC00694P0DN24 101 aa13.36□□□□□ -0.27
CLN3-233ENST00000568452 PKIAP61925 76 aa13.36□□□□□ -0.27
CLN3-233ENST00000568452 TMEM97Q5BJF2 176 aa13.36□□□□□ -0.27
CLN3-233ENST00000568452 ZNF664Q8N3J9 261 aa13.36□□□□□ -0.27
CLN3-233ENST00000568452 BAALCQ8WXS3 180 aa13.36□□□□□ -0.27
CLN3-233ENST00000568452 PMCHL2Q9BQD1 86 aa13.36□□□□□ -0.27
CLN3-233ENST00000568452 TM2D3Q9BRN9 247 aa13.36□□□□□ -0.27
CLN3-233ENST00000568452 PYGO1Q9Y3Y4 419 aa13.36□□□□□ -0.27
CLN3-233ENST00000568452 MGAM2Q2M2H8 2515 aa13.36□□□□□ -0.27
CLN3-233ENST00000568452 TSTD3H0UI37 97 aa13.35□□□□□ -0.27
CLN3-233ENST00000568452 NPSP0C0P6 89 aa13.35□□□□□ -0.27
CLN3-233ENST00000568452 GYPEP15421 78 aa13.35□□□□□ -0.27
CLN3-233ENST00000568452 PAPPA-AS1Q5QFB9 102 aa13.35□□□□□ -0.27
CLN3-233ENST00000568452 PAM16Q9Y3D7 125 aa13.35□□□□□ -0.27
CLN3-233ENST00000568452 HSBP1L1C9JCN9 74 aa13.35□□□□□ -0.27
CLN3-233ENST00000568452 SPANXA1Q9NS26 97 aa13.35□□□□□ -0.27
CLN3-233ENST00000568452 F5H768 121 aa13.34□□□□□ -0.27
CLN3-233ENST00000568452 SMAGPQ0VAQ4 97 aa13.34□□□□□ -0.27
CLN3-233ENST00000568452 C12orf74Q32Q52 190 aa13.33□□□□□ -0.28
CLN3-233ENST00000568452 SPATA45Q537H7 98 aa13.33□□□□□ -0.28
CLN3-233ENST00000568452 DPM2O94777 84 aa13.32□□□□□ -0.28
CLN3-233ENST00000568452 PMVKQ15126 192 aa13.32□□□□□ -0.28
CLN3-233ENST00000568452 NTM-AS1Q6ZSK4 140 aa13.32□□□□□ -0.28
CLN3-233ENST00000568452 ATP6V0E2Q8NHE4 81 aa13.32□□□□□ -0.28
CLN3-233ENST00000568452 MRAPQ8TCY5 172 aa13.32□□□□□ -0.28
CLN3-233ENST00000568452 CHTOPQ9Y3Y2 248 aaKnown RBP13.32□□□□□ -0.28
CLN3-233ENST00000568452 TRBV25-1A0A075B6N4 114 aa13.31□□□□□ -0.28
CLN3-233ENST00000568452 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.31□□□□□ -0.28
CLN3-233ENST00000568452 A0A0J9YWU9 116 aa13.31□□□□□ -0.28
CLN3-233ENST00000568452 IGKV2-29A2NJV5 120 aaPredicted RBP13.31□□□□□ -0.28
CLN3-233ENST00000568452 F8VRH5 84 aa13.31□□□□□ -0.28
CLN3-233ENST00000568452 IGKCP01834 107 aa13.31□□□□□ -0.28
CLN3-233ENST00000568452 HTN3P15516 51 aa13.31□□□□□ -0.28
CLN3-233ENST00000568452 TIMM21Q9BVV7 248 aa13.31□□□□□ -0.28
CLN3-233ENST00000568452 PRO1933Q9H354 126 aa13.31□□□□□ -0.28
CLN3-233ENST00000568452 NBEAL2Q6ZNJ1 2754 aa13.31□□□□□ -0.28
CLN3-233ENST00000568452 PRSS29PA6NIE9 313 aa13.31□□□□□ -0.28
CLN3-233ENST00000568452 VSIG2Q96IQ7 327 aa13.31□□□□□ -0.28
CLN3-233ENST00000568452 TMEM243Q9BU79 118 aa13.31□□□□□ -0.28
CLN3-233ENST00000568452 MRPL35Q9NZE8 188 aaKnown RBP13.31□□□□□ -0.28
CLN3-233ENST00000568452 UBE2D4Q9Y2X8 147 aa13.31□□□□□ -0.28
CLN3-233ENST00000568452 IGLV4-3A0A075B6K6 122 aa13.3□□□□□ -0.28
CLN3-233ENST00000568452 PLNP26678 52 aa13.3□□□□□ -0.28
CLN3-233ENST00000568452 TRAV26-1A0A087WT03 109 aa13.29□□□□□ -0.28
CLN3-233ENST00000568452 A0A0J9YY99 117 aa13.29□□□□□ -0.28
CLN3-233ENST00000568452 H7C423 109 aa13.29□□□□□ -0.28
CLN3-233ENST00000568452 VCX2Q9H322 139 aa13.29□□□□□ -0.28
CLN3-233ENST00000568452 CST9LQ9H4G1 147 aa13.29□□□□□ -0.28
CLN3-233ENST00000568452 TRBV6-8A0A0A6YYG3 113 aa13.28□□□□□ -0.28
CLN3-233ENST00000568452 hDV102S1A0JD36 115 aa13.28□□□□□ -0.28
CLN3-233ENST00000568452 UBE2L6O14933 153 aa13.28□□□□□ -0.28
CLN3-233ENST00000568452 MAJINQ3KP22 176 aa13.28□□□□□ -0.28
CLN3-233ENST00000568452 SH2D6Q7Z4S9 175 aa13.28□□□□□ -0.28
CLN3-233ENST00000568452 MRPL23Q16540 153 aaKnown RBP13.28□□□□□ -0.28
CLN3-233ENST00000568452 DGAT2L7PQ6IED9 249 aa13.28□□□□□ -0.28
CLN3-233ENST00000568452 MRPL52Q86TS9 123 aaKnown RBP13.28□□□□□ -0.28
CLN3-233ENST00000568452 C11orf45Q8TAV5 145 aa13.28□□□□□ -0.28
CLN3-233ENST00000568452 MRPS36P82909 103 aaKnown RBP13.27□□□□□ -0.29
CLN3-233ENST00000568452 DEFA6Q01524 100 aa13.27□□□□□ -0.29
CLN3-233ENST00000568452 OPRPNQ99935 248 aaPredicted RBP13.27□□□□□ -0.29
CLN3-233ENST00000568452 CSDC2Q9Y534 153 aaKnown RBP13.27□□□□□ -0.29
CLN3-233ENST00000568452 ICOSQ9Y6W8 199 aa13.27□□□□□ -0.29
CLN3-233ENST00000568452 H3BNG1 76 aa13.25□□□□□ -0.29
CLN3-233ENST00000568452 FGF6P10767 208 aa13.25□□□□□ -0.29
CLN3-233ENST00000568452 Q6ZTC4 211 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms