RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 Q8N976 141 aa13.12□□□□□ -0.31
CLN3-225ENST00000566824 TSHBP01222 138 aa13.11□□□□□ -0.31
CLN3-225ENST00000566824 CKS2P33552 79 aa13.11□□□□□ -0.31
CLN3-225ENST00000566824 KCNIP4Q6PIL6 250 aa13.11□□□□□ -0.31
CLN3-225ENST00000566824 TMEM242Q9NWH2 141 aa13.11□□□□□ -0.31
CLN3-225ENST00000566824 KLK12Q9UKR0 248 aa13.11□□□□□ -0.31
CLN3-225ENST00000566824 A0A087WX48 190 aa13.1□□□□□ -0.31
CLN3-225ENST00000566824 PMCHP20382 165 aa13.1□□□□□ -0.31
CLN3-225ENST00000566824 AMTP48728 403 aa13.1□□□□□ -0.31
CLN3-225ENST00000566824 TMEM136Q6ZRR5 245 aa13.1□□□□□ -0.31
CLN3-225ENST00000566824 TMEM243Q9BU79 118 aa13.1□□□□□ -0.31
CLN3-225ENST00000566824 I3L3M4 83 aa13.09□□□□□ -0.31
CLN3-225ENST00000566824 NPYP01303 97 aa13.09□□□□□ -0.31
CLN3-225ENST00000566824 BTF3P20290 206 aaKnown RBP13.09□□□□□ -0.31
CLN3-225ENST00000566824 RBX1P62877 108 aa13.09□□□□□ -0.31
CLN3-225ENST00000566824 CHCHD7Q9BUK0 85 aa13.09□□□□□ -0.31
CLN3-225ENST00000566824 TRBV27A0A0K0K1C4 114 aa13.08□□□□□ -0.32
CLN3-225ENST00000566824 TNFRSF6BO95407 300 aa13.08□□□□□ -0.32
CLN3-225ENST00000566824 SUMO2P61956 95 aaKnown RBP13.08□□□□□ -0.32
CLN3-225ENST00000566824 TRBV24-1A0A075B6N3 115 aa13.07□□□□□ -0.32
CLN3-225ENST00000566824 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.07□□□□□ -0.32
CLN3-225ENST00000566824 IGKV2-29A2NJV5 120 aaPredicted RBP13.07□□□□□ -0.32
CLN3-225ENST00000566824 SVBPQ8N300 66 aa13.07□□□□□ -0.32
CLN3-225ENST00000566824 BIRC6Q9NR09 4857 aa13.07□□□□□ -0.32
CLN3-225ENST00000566824 IGLV4-60A0A075B6I1 120 aa13.06□□□□□ -0.32
CLN3-225ENST00000566824 TRAV9-1A0A075B6T8 112 aa13.06□□□□□ -0.32
CLN3-225ENST00000566824 LAGE3Q14657 143 aa13.06□□□□□ -0.32
CLN3-225ENST00000566824 NDUFA5Q16718 116 aa13.06□□□□□ -0.32
CLN3-225ENST00000566824 ENHOQ6UWT2 76 aa13.06□□□□□ -0.32
CLN3-225ENST00000566824 SNAPINO95295 136 aa13.05□□□□□ -0.32
CLN3-225ENST00000566824 APCSP02743 223 aa13.05□□□□□ -0.32
CLN3-225ENST00000566824 S100PP25815 95 aa13.05□□□□□ -0.32
CLN3-225ENST00000566824 NFE4Q86UQ8 179 aa13.05□□□□□ -0.32
CLN3-225ENST00000566824 C20orf203Q8NBC4 194 aa13.05□□□□□ -0.32
CLN3-225ENST00000566824 UBE2WQ96B02 151 aa13.05□□□□□ -0.32
CLN3-225ENST00000566824 PRELID3AQ96N28 172 aa13.05□□□□□ -0.32
CLN3-225ENST00000566824 VCYO14598 125 aa13.04□□□□□ -0.32
CLN3-225ENST00000566824 PPP1R17O96001 155 aa13.04□□□□□ -0.32
CLN3-225ENST00000566824 ANGP03950 147 aaKnown RBP13.04□□□□□ -0.32
CLN3-225ENST00000566824 ESDP10768 282 aa13.04□□□□□ -0.32
CLN3-225ENST00000566824 ORMDL3Q8N138 153 aa13.04□□□□□ -0.32
CLN3-225ENST00000566824 C20orf78Q9BR46 151 aa13.04□□□□□ -0.32
CLN3-225ENST00000566824 PKHD1P08F94 4074 aa13.03□□□□□ -0.32
CLN3-225ENST00000566824 TGIF2-C20orf24A0A0A6YYL0 155 aa13.03□□□□□ -0.32
CLN3-225ENST00000566824 PPBPP02775 128 aa13.03□□□□□ -0.32
CLN3-225ENST00000566824 KIAA1644Q3SXP7 199 aa13.03□□□□□ -0.32
CLN3-225ENST00000566824 CLPSL2Q6UWE3 100 aa13.03□□□□□ -0.32
CLN3-225ENST00000566824 DYNC1H1Q14204 4646 aaKnown RBP13.02□□□□□ -0.32
CLN3-225ENST00000566824 LINC00269Q8N2A0 174 aa13.02□□□□□ -0.33
CLN3-225ENST00000566824 MAPKAPK5-AS1Q8N8E1 139 aa13.02□□□□□ -0.33
CLN3-225ENST00000566824 SMIM2Q9BVW6 85 aa13.02□□□□□ -0.33
CLN3-225ENST00000566824 TRAV8-3A0A0A6YYJ7 113 aa13.01□□□□□ -0.33
CLN3-225ENST00000566824 UBE2L6O14933 153 aa13.01□□□□□ -0.33
CLN3-225ENST00000566824 PKIAP61925 76 aa13.01□□□□□ -0.33
CLN3-225ENST00000566824 RPL32P62910 135 aaKnown RBP13.01□□□□□ -0.33
CLN3-225ENST00000566824 ELOBQ15370 118 aa13.01□□□□□ -0.33
CLN3-225ENST00000566824 A0A1B0GUV1 79 aa13□□□□□ -0.33
CLN3-225ENST00000566824 PHOX2AO14813 284 aa13□□□□□ -0.33
CLN3-225ENST00000566824 FUSP35637 526 aaKnown RBP eCLIP13□□□□□ -0.33
CLN3-225ENST00000566824 PRR34Q9NV39 138 aa13□□□□□ -0.33
CLN3-225ENST00000566824 LRCOL1A6NCL2 159 aa12.99□□□□□ -0.33
CLN3-225ENST00000566824 FGF6P10767 208 aa12.99□□□□□ -0.33
CLN3-225ENST00000566824 FCER1GP30273 86 aa12.99□□□□□ -0.33
CLN3-225ENST00000566824 WFDC2Q14508 124 aa12.99□□□□□ -0.33
CLN3-225ENST00000566824 YPEL4Q96NS1 127 aa12.99□□□□□ -0.33
CLN3-225ENST00000566824 A0A087WTM6 91 aa12.98□□□□□ -0.33
CLN3-225ENST00000566824 LOC389332A0A1B0GUA5 103 aa12.98□□□□□ -0.33
CLN3-225ENST00000566824 TCAPO15273 167 aa12.98□□□□□ -0.33
CLN3-225ENST00000566824 KRTAP10-2P60368 255 aa12.98□□□□□ -0.33
CLN3-225ENST00000566824 GNB1LQ9BYB4 327 aa12.98□□□□□ -0.33
CLN3-225ENST00000566824 DNAH5Q8TE73 4624 aa12.97□□□□□ -0.33
CLN3-225ENST00000566824 IGKV2D-24A0A075B6R9 120 aa12.97□□□□□ -0.33
CLN3-225ENST00000566824 PSCAO43653 123 aa12.97□□□□□ -0.33
CLN3-225ENST00000566824 RNASEKQ6P5S7 137 aaKnown RBP12.97□□□□□ -0.33
CLN3-225ENST00000566824 KIR2DL4Q99706 377 aa12.97□□□□□ -0.33
CLN3-225ENST00000566824 PRSS47A8MTI9 375 aa12.96□□□□□ -0.33
CLN3-225ENST00000566824 H7C423 109 aa12.96□□□□□ -0.33
CLN3-225ENST00000566824 HLA-DQA1P01909 254 aa12.96□□□□□ -0.33
CLN3-225ENST00000566824 REG3AQ06141 175 aa12.96□□□□□ -0.33
CLN3-225ENST00000566824 AMMECR1LQ6DCA0 310 aa12.96□□□□□ -0.33
CLN3-225ENST00000566824 KRTAP26-1Q6PEX3 210 aa12.96□□□□□ -0.33
CLN3-225ENST00000566824 CBLN2Q8IUK8 224 aa12.96□□□□□ -0.33
CLN3-225ENST00000566824 LECT2O14960 151 aa12.95□□□□□ -0.34
CLN3-225ENST00000566824 CRPP02741 224 aa12.95□□□□□ -0.34
CLN3-225ENST00000566824 Q0VG73 95 aa12.95□□□□□ -0.34
CLN3-225ENST00000566824 SPATA12Q7Z6I5 190 aa12.95□□□□□ -0.34
CLN3-225ENST00000566824 TM2D2Q9BX73 214 aa12.95□□□□□ -0.34
CLN3-225ENST00000566824 MRPL18Q9H0U6 180 aaKnown RBP12.95□□□□□ -0.34
CLN3-225ENST00000566824 IGLV10-54A0A075B6I4 117 aa12.94□□□□□ -0.34
CLN3-225ENST00000566824 RPL39P62891 51 aaKnown RBP12.94□□□□□ -0.34
CLN3-225ENST00000566824 BAALCQ8WXS3 180 aa12.94□□□□□ -0.34
CLN3-225ENST00000566824 MAP1LC3AQ9H492 121 aa12.94□□□□□ -0.34
CLN3-225ENST00000566824 LAMTOR2Q9Y2Q5 125 aa12.94□□□□□ -0.34
CLN3-225ENST00000566824 MRPL52Q86TS9 123 aaKnown RBP12.93□□□□□ -0.34
CLN3-225ENST00000566824 IGKV3OR2-268A0A0C4DH90 116 aa12.92□□□□□ -0.34
CLN3-225ENST00000566824 FABP9Q0Z7S8 132 aa12.92□□□□□ -0.34
CLN3-225ENST00000566824 MIAQ16674 131 aa12.92□□□□□ -0.34
CLN3-225ENST00000566824 RMI2Q96E14 147 aa12.92□□□□□ -0.34
CLN3-225ENST00000566824 ALKBH7Q9BT30 221 aaPredicted RBP12.92□□□□□ -0.34
CLN3-225ENST00000566824 C1orf43Q9BWL3 253 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms