RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 NFE4Q86UQ8 179 aa6.5□□□□□ -1.37
CLN3-220ENST00000566040 MRAP2Q96G30 205 aa6.5□□□□□ -1.37
CLN3-220ENST00000566040 CARHSP1Q9Y2V2 147 aaKnown RBP6.5□□□□□ -1.37
CLN3-220ENST00000566040 ABCA13Q86UQ4 5058 aa6.5□□□□□ -1.37
CLN3-220ENST00000566040 TRBV25-1A0A075B6N4 114 aa6.49□□□□□ -1.37
CLN3-220ENST00000566040 IGHV1-24A0A0C4DH33 117 aa6.49□□□□□ -1.37
CLN3-220ENST00000566040 TRBV27A0A0K0K1C4 114 aa6.49□□□□□ -1.37
CLN3-220ENST00000566040 CAMPP49913 170 aa6.49□□□□□ -1.37
CLN3-220ENST00000566040 NTN5Q8WTR8 489 aaPredicted RBP6.49□□□□□ -1.37
CLN3-220ENST00000566040 FAM104AQ969W3 186 aa6.49□□□□□ -1.37
CLN3-220ENST00000566040 CHCHD5Q9BSY4 110 aa6.49□□□□□ -1.37
CLN3-220ENST00000566040 SEC11CQ9BY50 192 aa6.49□□□□□ -1.37
CLN3-220ENST00000566040 FAT1Q14517 4588 aa6.49□□□□□ -1.37
CLN3-220ENST00000566040 HBBP68871 147 aa6.48□□□□□ -1.37
CLN3-220ENST00000566040 TMEM97Q5BJF2 176 aa6.48□□□□□ -1.37
CLN3-220ENST00000566040 CLPSL2Q6UWE3 100 aa6.48□□□□□ -1.37
CLN3-220ENST00000566040 ANAPC16Q96DE5 110 aa6.48□□□□□ -1.37
CLN3-220ENST00000566040 TMEM243Q9BU79 118 aa6.48□□□□□ -1.37
CLN3-220ENST00000566040 TMEM242Q9NWH2 141 aa6.48□□□□□ -1.37
CLN3-220ENST00000566040 TRBV24-1A0A075B6N3 115 aa6.47□□□□□ -1.37
CLN3-220ENST00000566040 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.47□□□□□ -1.37
CLN3-220ENST00000566040 A0A1B0GUV1 79 aa6.47□□□□□ -1.37
CLN3-220ENST00000566040 A0A1B0GW15 77 aa6.47□□□□□ -1.37
CLN3-220ENST00000566040 IGKV2-29A2NJV5 120 aaPredicted RBP6.47□□□□□ -1.37
CLN3-220ENST00000566040 F8W036 122 aa6.47□□□□□ -1.37
CLN3-220ENST00000566040 PPP1R2P9O14990 202 aa6.47□□□□□ -1.37
CLN3-220ENST00000566040 NPYP01303 97 aa6.47□□□□□ -1.37
CLN3-220ENST00000566040 AMTP48728 403 aa6.47□□□□□ -1.37
CLN3-220ENST00000566040 KRTAP10-1P60331 282 aa6.47□□□□□ -1.37
CLN3-220ENST00000566040 COTL1Q14019 142 aa6.47□□□□□ -1.37
CLN3-220ENST00000566040 ATP5L2Q7Z4Y8 100 aa6.47□□□□□ -1.37
CLN3-220ENST00000566040 UBE2WQ96B02 151 aa6.47□□□□□ -1.37
CLN3-220ENST00000566040 BORCS7Q96B45 105 aa6.47□□□□□ -1.37
CLN3-220ENST00000566040 PCLOQ9Y6V0 5065 aa6.47□□□□□ -1.37
CLN3-220ENST00000566040 A0A087WX48 190 aa6.46□□□□□ -1.38
CLN3-220ENST00000566040 TRAV8-3A0A0A6YYJ7 113 aa6.46□□□□□ -1.38
CLN3-220ENST00000566040 C16orf90A8MZG2 172 aa6.46□□□□□ -1.38
CLN3-220ENST00000566040 D6R8Y8 96 aa6.46□□□□□ -1.38
CLN3-220ENST00000566040 LECT2O14960 151 aa6.46□□□□□ -1.38
CLN3-220ENST00000566040 SUMO2P61956 95 aaKnown RBP6.46□□□□□ -1.38
CLN3-220ENST00000566040 RPL32P62910 135 aaKnown RBP6.46□□□□□ -1.38
CLN3-220ENST00000566040 SMIM15Q7Z3B0 74 aa6.46□□□□□ -1.38
CLN3-220ENST00000566040 LINC00269Q8N2A0 174 aa6.46□□□□□ -1.38
CLN3-220ENST00000566040 Q8N814 137 aa6.46□□□□□ -1.38
CLN3-220ENST00000566040 KRTAP4-5Q9BYR2 181 aa6.46□□□□□ -1.38
CLN3-220ENST00000566040 I3L3M4 83 aa6.45□□□□□ -1.38
CLN3-220ENST00000566040 TNFRSF6BO95407 300 aa6.45□□□□□ -1.38
CLN3-220ENST00000566040 MT-ND4LP03901 98 aa6.45□□□□□ -1.38
CLN3-220ENST00000566040 ANGP03950 147 aaKnown RBP6.45□□□□□ -1.38
CLN3-220ENST00000566040 TMEM136Q6ZRR5 245 aa6.45□□□□□ -1.38
CLN3-220ENST00000566040 BAALCQ8WXS3 180 aa6.45□□□□□ -1.38
CLN3-220ENST00000566040 ST20Q9HBF5 79 aa6.45□□□□□ -1.38
CLN3-220ENST00000566040 IGKV2D-24A0A075B6R9 120 aa6.44□□□□□ -1.38
CLN3-220ENST00000566040 C7orf77A4D0Y5 90 aa6.44□□□□□ -1.38
CLN3-220ENST00000566040 TMEM262E9PQX1 116 aa6.44□□□□□ -1.38
CLN3-220ENST00000566040 APCSP02743 223 aa6.44□□□□□ -1.38
CLN3-220ENST00000566040 FGF6P10767 208 aa6.44□□□□□ -1.38
CLN3-220ENST00000566040 REG3AQ06141 175 aa6.44□□□□□ -1.38
CLN3-220ENST00000566040 CLRN3Q8NCR9 226 aa6.44□□□□□ -1.38
CLN3-220ENST00000566040 YPEL4Q96NS1 127 aa6.44□□□□□ -1.38
CLN3-220ENST00000566040 IMMP2LQ96T52 175 aa6.44□□□□□ -1.38
CLN3-220ENST00000566040 SMIM2Q9BVW6 85 aa6.44□□□□□ -1.38
CLN3-220ENST00000566040 URGCP-MRPS24S4R325 110 aa6.44□□□□□ -1.38
CLN3-220ENST00000566040 PKHD1L1Q86WI1 4243 aa6.43□□□□□ -1.38
CLN3-220ENST00000566040 XGP55808 180 aa6.43□□□□□ -1.38
CLN3-220ENST00000566040 MIAQ16674 131 aa6.43□□□□□ -1.38
CLN3-220ENST00000566040 KCNIP4Q6PIL6 250 aa6.43□□□□□ -1.38
CLN3-220ENST00000566040 MRPL52Q86TS9 123 aaKnown RBP6.43□□□□□ -1.38
CLN3-220ENST00000566040 IGLV10-54A0A075B6I4 117 aa6.42□□□□□ -1.38
CLN3-220ENST00000566040 PRSS47A8MTI9 375 aa6.42□□□□□ -1.38
CLN3-220ENST00000566040 H7C423 109 aa6.42□□□□□ -1.38
CLN3-220ENST00000566040 CDK2AP2O75956 126 aa6.42□□□□□ -1.38
CLN3-220ENST00000566040 PMCHP20382 165 aa6.42□□□□□ -1.38
CLN3-220ENST00000566040 CKS2P33552 79 aa6.42□□□□□ -1.38
CLN3-220ENST00000566040 PKIAP61925 76 aa6.42□□□□□ -1.38
CLN3-220ENST00000566040 Q0VG73 95 aa6.42□□□□□ -1.38
CLN3-220ENST00000566040 ELOBQ15370 118 aa6.42□□□□□ -1.38
CLN3-220ENST00000566040 CDPF1Q6NVV7 123 aa6.42□□□□□ -1.38
CLN3-220ENST00000566040 BTF3L4Q96K17 158 aa6.42□□□□□ -1.38
CLN3-220ENST00000566040 C20orf78Q9BR46 151 aa6.42□□□□□ -1.38
CLN3-220ENST00000566040 TM2D2Q9BX73 214 aa6.42□□□□□ -1.38
CLN3-220ENST00000566040 CTDSP1Q9GZU7 261 aa6.42□□□□□ -1.38
CLN3-220ENST00000566040 FAM30AQ9NZY2 134 aa6.42□□□□□ -1.38
CLN3-220ENST00000566040 UBE2D4Q9Y2X8 147 aa6.42□□□□□ -1.38
CLN3-220ENST00000566040 USP17L23D6RBM5 183 aa6.41□□□□□ -1.38
CLN3-220ENST00000566040 VCYO14598 125 aa6.41□□□□□ -1.38
CLN3-220ENST00000566040 PHOX2AO14813 284 aa6.41□□□□□ -1.38
CLN3-220ENST00000566040 PSCAO43653 123 aa6.41□□□□□ -1.38
CLN3-220ENST00000566040 PRSS1P07477 247 aa6.41□□□□□ -1.38
CLN3-220ENST00000566040 RPL39P62891 51 aaKnown RBP6.41□□□□□ -1.38
CLN3-220ENST00000566040 LINC01620Q4KN68 170 aa6.41□□□□□ -1.38
CLN3-220ENST00000566040 Q6ZSA8 131 aa6.41□□□□□ -1.38
CLN3-220ENST00000566040 C15orf56Q8N910 161 aa6.41□□□□□ -1.38
CLN3-220ENST00000566040 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.41□□□□□ -1.38
CLN3-220ENST00000566040 C1orf43Q9BWL3 253 aa6.41□□□□□ -1.38
CLN3-220ENST00000566040 PGPEP1Q9NXJ5 209 aa6.41□□□□□ -1.38
CLN3-220ENST00000566040 SRRM2Q9UQ35 2752 aaKnown RBP6.4□□□□□ -1.38
CLN3-220ENST00000566040 TRAV9-1A0A075B6T8 112 aa6.4□□□□□ -1.38
CLN3-220ENST00000566040 CRPP02741 224 aa6.4□□□□□ -1.38
CLN3-220ENST00000566040 PPBPP02775 128 aa6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms