RNA–Protein interactions for RNA: ENST00000564172.1

GDE1-203, Transcript of glycerophosphodiester phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene GDE1, Length 2,238 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GDE1-203ENST00000564172 Q6ZQT7 251 aa13.09□□□□□ -0.31
GDE1-203ENST00000564172 MAST4O15021 2626 aa13.09□□□□□ -0.31
GDE1-203ENST00000564172 ATRQ13535 2644 aa13.09□□□□□ -0.31
GDE1-203ENST00000564172 DEFB131AP59861 70 aa13.09□□□□□ -0.31
GDE1-203ENST00000564172 KRTAP24-1Q3LI83 254 aa13.09□□□□□ -0.31
GDE1-203ENST00000564172 LINC00482Q8N8I6 264 aa13.09□□□□□ -0.31
GDE1-203ENST00000564172 DPM2O94777 84 aa13.08□□□□□ -0.32
GDE1-203ENST00000564172 TWIST1Q15672 202 aa13.08□□□□□ -0.32
GDE1-203ENST00000564172 PRR9Q5T870 116 aa13.08□□□□□ -0.32
GDE1-203ENST00000564172 KIR2DL5BQ8NHK3 375 aa13.08□□□□□ -0.32
GDE1-203ENST00000564172 ODF3Q96PU9 254 aa13.08□□□□□ -0.32
GDE1-203ENST00000564172 ATP5LO75964 103 aa13.08□□□□□ -0.32
GDE1-203ENST00000564172 C15orf53Q8NAA6 179 aa13.08□□□□□ -0.32
GDE1-203ENST00000564172 IGLV1-51P01701 117 aa13.07□□□□□ -0.32
GDE1-203ENST00000564172 UBE2D1P51668 147 aa13.07□□□□□ -0.32
GDE1-203ENST00000564172 EMP1P54849 157 aa13.07□□□□□ -0.32
GDE1-203ENST00000564172 TENM1Q9UKZ4 2725 aa13.07□□□□□ -0.32
GDE1-203ENST00000564172 TMSB15BA0A087X1C1 80 aa13.07□□□□□ -0.32
GDE1-203ENST00000564172 LINC01546A6NGU7 62 aa13.07□□□□□ -0.32
GDE1-203ENST00000564172 C3orf22Q8N5N4 141 aa13.07□□□□□ -0.32
GDE1-203ENST00000564172 MAPKAPK5-AS1Q8N8E1 139 aa13.07□□□□□ -0.32
GDE1-203ENST00000564172 LOC107984156A0A0G2JMH3 177 aa13.06□□□□□ -0.32
GDE1-203ENST00000564172 TRBV7-7A0A0K0K1E9 115 aa13.06□□□□□ -0.32
GDE1-203ENST00000564172 ORM1P02763 201 aa13.06□□□□□ -0.32
GDE1-203ENST00000564172 ZC2HC1BQ5TFG8 222 aa13.06□□□□□ -0.32
GDE1-203ENST00000564172 ZFP2Q6ZN57 461 aa13.06□□□□□ -0.32
GDE1-203ENST00000564172 ZNF575Q86XF7 245 aa13.06□□□□□ -0.32
GDE1-203ENST00000564172 APRG1Q8IVJ8 170 aa13.06□□□□□ -0.32
GDE1-203ENST00000564172 ARL17AQ8IVW1 177 aa13.06□□□□□ -0.32
GDE1-203ENST00000564172 MAP6D1Q9H9H5 199 aa13.06□□□□□ -0.32
GDE1-203ENST00000564172 GTSCR1Q86UQ5 136 aa13.05□□□□□ -0.32
GDE1-203ENST00000564172 C11orf21Q9P2W6 132 aa13.05□□□□□ -0.32
GDE1-203ENST00000564172 UQCRQO14949 82 aa13.05□□□□□ -0.32
GDE1-203ENST00000564172 TCL1BO95988 128 aa13.05□□□□□ -0.32
GDE1-203ENST00000564172 IGKV3-20P01619 116 aa13.05□□□□□ -0.32
GDE1-203ENST00000564172 HERVK_113P63121 156 aa13.05□□□□□ -0.32
GDE1-203ENST00000564172 PRIMA1Q86XR5 153 aa13.05□□□□□ -0.32
GDE1-203ENST00000564172 LINC01549A6NIU2 74 aa13.04□□□□□ -0.32
GDE1-203ENST00000564172 IGLC6P0CF74 106 aa13.04□□□□□ -0.32
GDE1-203ENST00000564172 FCER1GP30273 86 aa13.04□□□□□ -0.32
GDE1-203ENST00000564172 RPL13AP40429 203 aaKnown RBP13.04□□□□□ -0.32
GDE1-203ENST00000564172 C9orf153Q5TBE3 101 aa13.04□□□□□ -0.32
GDE1-203ENST00000564172 ORMDL3Q8N138 153 aa13.04□□□□□ -0.32
GDE1-203ENST00000564172 LINC00526Q96FQ7 95 aa13.04□□□□□ -0.32
GDE1-203ENST00000564172 IMUPQ9GZP8 106 aa13.04□□□□□ -0.32
GDE1-203ENST00000564172 AGRNO00468 2067 aa13.04□□□□□ -0.32
GDE1-203ENST00000564172 IGKV3D-20A0A0C4DH25 116 aa13.04□□□□□ -0.32
GDE1-203ENST00000564172 KNCNA6PVL3 124 aa13.04□□□□□ -0.32
GDE1-203ENST00000564172 KLLNB2CW77 178 aa13.04□□□□□ -0.32
GDE1-203ENST00000564172 RNASE4P34096 147 aaKnown RBP13.03□□□□□ -0.32
GDE1-203ENST00000564172 CHCHD5Q9BSY4 110 aa13.03□□□□□ -0.32
GDE1-203ENST00000564172 TRAV8-4A0A0B4J246 113 aa13.03□□□□□ -0.32
GDE1-203ENST00000564172 TRAV21A0A0B4J279 112 aa13.03□□□□□ -0.32
GDE1-203ENST00000564172 SLC25A20O43772 301 aa13.03□□□□□ -0.32
GDE1-203ENST00000564172 ODF3L2Q3SX64 289 aa13.03□□□□□ -0.32
GDE1-203ENST00000564172 LOC389332A0A1B0GUA5 103 aa13.02□□□□□ -0.33
GDE1-203ENST00000564172 H3BMM0 161 aa13.02□□□□□ -0.33
GDE1-203ENST00000564172 SPATA3Q8NHX4 192 aa13.01□□□□□ -0.33
GDE1-203ENST00000564172 D6R8Y8 96 aa13.01□□□□□ -0.33
GDE1-203ENST00000564172 ATP5G1P05496 136 aa13.01□□□□□ -0.33
GDE1-203ENST00000564172 ARMS2P0C7Q2 107 aa13.01□□□□□ -0.33
GDE1-203ENST00000564172 LEPP41159 167 aa13.01□□□□□ -0.33
GDE1-203ENST00000564172 C10orf126Q8N4M7 172 aa13.01□□□□□ -0.33
GDE1-203ENST00000564172 A8MTW9 85 aa13□□□□□ -0.33
GDE1-203ENST00000564172 H3BVH4 76 aa13□□□□□ -0.33
GDE1-203ENST00000564172 FAM104BQ5XKR9 115 aa13□□□□□ -0.33
GDE1-203ENST00000564172 Q8N1Y9 231 aa13□□□□□ -0.33
GDE1-203ENST00000564172 PRSS1P07477 247 aa13□□□□□ -0.33
GDE1-203ENST00000564172 FAM240AA0A1B0GVK7 77 aa12.99□□□□□ -0.33
GDE1-203ENST00000564172 SPINK13Q1W4C9 94 aa12.99□□□□□ -0.33
GDE1-203ENST00000564172 LYZL1Q6UWQ5 148 aa12.99□□□□□ -0.33
GDE1-203ENST00000564172 BEAN1Q3B7T3 259 aa12.98□□□□□ -0.33
GDE1-203ENST00000564172 C3orf56Q8N813 242 aa12.98□□□□□ -0.33
GDE1-203ENST00000564172 NOTCH3Q9UM47 2321 aa12.98□□□□□ -0.33
GDE1-203ENST00000564172 TRAV12-2A0A075B6T6 113 aa12.98□□□□□ -0.33
GDE1-203ENST00000564172 CRYGDP07320 174 aa12.98□□□□□ -0.33
GDE1-203ENST00000564172 TRAV12-3A0A0B4J271 114 aa12.97□□□□□ -0.33
GDE1-203ENST00000564172 FBN1P35555 2871 aaKnown RBP12.97□□□□□ -0.33
GDE1-203ENST00000564172 RBMY1BA6NDE4 496 aaKnown RBP12.97□□□□□ -0.33
GDE1-203ENST00000564172 RBMY1EA6NEQ0 496 aaKnown RBP12.97□□□□□ -0.33
GDE1-203ENST00000564172 CD7P09564 240 aa12.97□□□□□ -0.33
GDE1-203ENST00000564172 RBMY1DP0C7P1 496 aaKnown RBP12.97□□□□□ -0.33
GDE1-203ENST00000564172 CMC4P56277 68 aaPredicted RBP12.97□□□□□ -0.33
GDE1-203ENST00000564172 EDA2RQ9HAV5 297 aa12.97□□□□□ -0.33
GDE1-203ENST00000564172 VWFP04275 2813 aa12.96□□□□□ -0.33
GDE1-203ENST00000564172 C9orf66Q5T8R8 295 aa12.96□□□□□ -0.33
GDE1-203ENST00000564172 PLNP26678 52 aa12.96□□□□□ -0.34
GDE1-203ENST00000564172 FXYD7P58549 80 aa12.95□□□□□ -0.34
GDE1-203ENST00000564172 POM121L12Q8N7R1 296 aa12.95□□□□□ -0.34
GDE1-203ENST00000564172 WFDC9Q8NEX5 89 aa12.94□□□□□ -0.34
GDE1-203ENST00000564172 C19orf73Q9NVV2 129 aa12.94□□□□□ -0.34
GDE1-203ENST00000564172 TRPT1Q86TN4 253 aaKnown RBP12.94□□□□□ -0.34
GDE1-203ENST00000564172 CNFNQ9BYD5 112 aa12.94□□□□□ -0.34
GDE1-203ENST00000564172 CRYGAP11844 174 aa12.93□□□□□ -0.34
GDE1-203ENST00000564172 MRPL51Q4U2R6 128 aaKnown RBP12.93□□□□□ -0.34
GDE1-203ENST00000564172 STHQ8IWL8 128 aa12.93□□□□□ -0.34
GDE1-203ENST00000564172 NXT2Q9NPJ8 142 aaKnown RBP12.93□□□□□ -0.34
GDE1-203ENST00000564172 GNRH2O43555 120 aa12.93□□□□□ -0.34
GDE1-203ENST00000564172 TRRAPQ9Y4A5 3859 aa12.93□□□□□ -0.34
GDE1-203ENST00000564172 NTN5Q8WTR8 489 aaPredicted RBP12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms