RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 A0A0G2JRQ6 117 aa2.33□□□□□ -2.04
VPS35-203ENST00000562420 D6R8Y8 96 aa2.33□□□□□ -2.04
VPS35-203ENST00000562420 C5orf67F2Z3F1 127 aa2.33□□□□□ -2.04
VPS35-203ENST00000562420 LEPROTO15243 131 aa2.33□□□□□ -2.04
VPS35-203ENST00000562420 ZNF138P52744 262 aa2.33□□□□□ -2.04
VPS35-203ENST00000562420 FXYD7P58549 80 aa2.33□□□□□ -2.04
VPS35-203ENST00000562420 RPS21P63220 83 aaKnown RBP2.33□□□□□ -2.04
VPS35-203ENST00000562420 NDPQ00604 133 aa2.33□□□□□ -2.04
VPS35-203ENST00000562420 C2orf83Q53S99 150 aa2.33□□□□□ -2.04
VPS35-203ENST00000562420 LINC01560Q8TB33 94 aa2.33□□□□□ -2.04
VPS35-203ENST00000562420 LINC00467Q9BRT7 94 aa2.33□□□□□ -2.04
VPS35-203ENST00000562420 ATG2BQ96BY7 2078 aa2.33□□□□□ -2.04
VPS35-203ENST00000562420 KIAA1549LQ6ZVL6 1849 aa2.33□□□□□ -2.04
VPS35-203ENST00000562420 IGLV2-18A0A075B6J9 118 aa2.32□□□□□ -2.04
VPS35-203ENST00000562420 IGKV1D-13A0A0B4J2D9 117 aa2.32□□□□□ -2.04
VPS35-203ENST00000562420 EPOPA6NHQ4 379 aa2.32□□□□□ -2.04
VPS35-203ENST00000562420 A8MUN3 132 aa2.32□□□□□ -2.04
VPS35-203ENST00000562420 TMEM256-PLSCR3K7ERE1 68 aa2.32□□□□□ -2.04
VPS35-203ENST00000562420 IGHV3-48P01763 117 aa2.32□□□□□ -2.04
VPS35-203ENST00000562420 CISD3P0C7P0 127 aa2.32□□□□□ -2.04
VPS35-203ENST00000562420 BAALC-AS2P0C853 105 aa2.32□□□□□ -2.04
VPS35-203ENST00000562420 IGHV3-43DP0DP04 118 aa2.32□□□□□ -2.04
VPS35-203ENST00000562420 IGKV1-13P0DP09 117 aa2.32□□□□□ -2.04
VPS35-203ENST00000562420 UNQ9165/PRO28630Q6UXU0 137 aa2.32□□□□□ -2.04
VPS35-203ENST00000562420 C11orf72Q8NBR9 251 aa2.32□□□□□ -2.04
VPS35-203ENST00000562420 SMCR5Q8TEV8 140 aa2.32□□□□□ -2.04
VPS35-203ENST00000562420 CHCHD10Q8WYQ3 142 aaPredicted RBP2.32□□□□□ -2.04
VPS35-203ENST00000562420 RNASE6Q93091 150 aaKnown RBP2.32□□□□□ -2.04
VPS35-203ENST00000562420 CAMK2N2Q96S95 79 aa2.32□□□□□ -2.04
VPS35-203ENST00000562420 UBL5Q9BZL1 73 aa2.32□□□□□ -2.04
VPS35-203ENST00000562420 PHF3Q92576 2039 aaKnown RBP2.32□□□□□ -2.04
VPS35-203ENST00000562420 PTPRSQ13332 1948 aa2.31□□□□□ -2.04
VPS35-203ENST00000562420 THADAQ6YHU6 1953 aa2.31□□□□□ -2.04
VPS35-203ENST00000562420 IGHV5-51A0A0C4DH38 117 aa2.31□□□□□ -2.04
VPS35-203ENST00000562420 IGIPA6NJ69 53 aa2.31□□□□□ -2.04
VPS35-203ENST00000562420 FAM223BA6NKX1 122 aa2.31□□□□□ -2.04
VPS35-203ENST00000562420 M0R3E3 92 aa2.31□□□□□ -2.04
VPS35-203ENST00000562420 NDUFB1O75438 58 aa2.31□□□□□ -2.04
VPS35-203ENST00000562420 NDUFA3O95167 84 aa2.31□□□□□ -2.04
VPS35-203ENST00000562420 FSTL3O95633 263 aa2.31□□□□□ -2.04
VPS35-203ENST00000562420 ARMS2P0C7Q2 107 aa2.31□□□□□ -2.04
VPS35-203ENST00000562420 IGHV1-2P23083 117 aa2.31□□□□□ -2.04
VPS35-203ENST00000562420 COX7A1P24310 79 aa2.31□□□□□ -2.04
VPS35-203ENST00000562420 FUSP35637 526 aaKnown RBP eCLIP2.31□□□□□ -2.04
VPS35-203ENST00000562420 ELOF1P60002 83 aaKnown RBP2.31□□□□□ -2.04
VPS35-203ENST00000562420 C9orf129Q5T035 196 aaKnown RBP2.31□□□□□ -2.04
VPS35-203ENST00000562420 C10orf113Q5VZT2 155 aa2.31□□□□□ -2.04
VPS35-203ENST00000562420 MIR17HGQ75NE6 70 aa2.31□□□□□ -2.04
VPS35-203ENST00000562420 CAMK2N1Q7Z7J9 78 aa2.31□□□□□ -2.04
VPS35-203ENST00000562420 C17orf82Q86X59 251 aaPredicted RBP2.31□□□□□ -2.04
VPS35-203ENST00000562420 FAM223AQ8IWN6 122 aa2.31□□□□□ -2.04
VPS35-203ENST00000562420 LINC01006Q8NI28 216 aa2.31□□□□□ -2.04
VPS35-203ENST00000562420 CYSTM1Q9H1C7 97 aa2.31□□□□□ -2.04
VPS35-203ENST00000562420 HEATR1Q9H583 2144 aaKnown RBP2.31□□□□□ -2.04
VPS35-203ENST00000562420 COL4A2P08572 1712 aa2.31□□□□□ -2.04
VPS35-203ENST00000562420 LTBP2Q14767 1821 aa2.31□□□□□ -2.04
VPS35-203ENST00000562420 DNAH12Q6ZR08 3092 aa2.31□□□□□ -2.04
VPS35-203ENST00000562420 PCDH15Q96QU1 1955 aa2.3□□□□□ -2.04
VPS35-203ENST00000562420 TANC2Q9HCD6 1990 aa2.3□□□□□ -2.04
VPS35-203ENST00000562420 KIAA1549Q9HCM3 1950 aa2.3□□□□□ -2.04
VPS35-203ENST00000562420 IGHV3-74A0A0B4J1X5 117 aa2.3□□□□□ -2.04
VPS35-203ENST00000562420 C17orf98A8MV24 154 aa2.3□□□□□ -2.04
VPS35-203ENST00000562420 C4orf51C9J302 202 aa2.3□□□□□ -2.04
VPS35-203ENST00000562420 F8WEM9 126 aa2.3□□□□□ -2.04
VPS35-203ENST00000562420 KRTAP5-8O75690 187 aa2.3□□□□□ -2.04
VPS35-203ENST00000562420 RPL27AP46776 148 aaKnown RBP2.3□□□□□ -2.04
VPS35-203ENST00000562420 ZNF137PP52743 207 aa2.3□□□□□ -2.04
VPS35-203ENST00000562420 SS18Q15532 418 aa2.3□□□□□ -2.04
VPS35-203ENST00000562420 KRTAP13-3Q3SY46 172 aa2.3□□□□□ -2.04
VPS35-203ENST00000562420 LINC01554Q52M75 96 aa2.3□□□□□ -2.04
VPS35-203ENST00000562420 C10orf128Q5T292 105 aa2.3□□□□□ -2.04
VPS35-203ENST00000562420 Q86TA4 180 aa2.3□□□□□ -2.04
VPS35-203ENST00000562420 MUSTN1Q8IVN3 82 aa2.3□□□□□ -2.04
VPS35-203ENST00000562420 TMEM61Q8N0U2 210 aa2.3□□□□□ -2.04
VPS35-203ENST00000562420 RNF185Q96GF1 192 aa2.3□□□□□ -2.04
VPS35-203ENST00000562420 SMIM2Q9BVW6 85 aa2.3□□□□□ -2.04
VPS35-203ENST00000562420 TMEM14BQ9NUH8 114 aa2.3□□□□□ -2.04
VPS35-203ENST00000562420 KIAA0100Q14667 2235 aaKnown RBP2.3□□□□□ -2.04
VPS35-203ENST00000562420 MYO9BQ13459 2157 aa2.29□□□□□ -2.04
VPS35-203ENST00000562420 IGLV8-61A0A075B6I0 122 aa2.29□□□□□ -2.04
VPS35-203ENST00000562420 TRBV6-8A0A0A6YYG3 113 aa2.29□□□□□ -2.04
VPS35-203ENST00000562420 IGKV1-6A0A0C4DH72 117 aa2.29□□□□□ -2.04
VPS35-203ENST00000562420 hDV103S1A0JD37 113 aa2.29□□□□□ -2.04
VPS35-203ENST00000562420 C3orf84H3BNL1 204 aa2.29□□□□□ -2.04
VPS35-203ENST00000562420 I3L3M4 83 aa2.29□□□□□ -2.04
VPS35-203ENST00000562420 K7ERS5 55 aa2.29□□□□□ -2.04
VPS35-203ENST00000562420 GNRH2O43555 120 aa2.29□□□□□ -2.04
VPS35-203ENST00000562420 IGHV1-69P01742 117 aa2.29□□□□□ -2.04
VPS35-203ENST00000562420 RPL28P46779 137 aaKnown RBP2.29□□□□□ -2.04
VPS35-203ENST00000562420 ERHP84090 104 aaKnown RBP2.29□□□□□ -2.04
VPS35-203ENST00000562420 MIAQ16674 131 aa2.29□□□□□ -2.04
VPS35-203ENST00000562420 FAM74A4Q5TZK3 123 aa2.29□□□□□ -2.04
VPS35-203ENST00000562420 FAM27BQ5VT28 67 aa2.29□□□□□ -2.04
VPS35-203ENST00000562420 LYZL1Q6UWQ5 148 aa2.29□□□□□ -2.04
VPS35-203ENST00000562420 ZNF833PQ6ZTB9 187 aa2.29□□□□□ -2.04
VPS35-203ENST00000562420 LINC00269Q8N2A0 174 aa2.29□□□□□ -2.04
VPS35-203ENST00000562420 Q8N6K4 173 aa2.29□□□□□ -2.04
VPS35-203ENST00000562420 CCL4L1Q8NHW4 92 aa2.29□□□□□ -2.04
VPS35-203ENST00000562420 TTTY13Q9BZ97 58 aa2.29□□□□□ -2.04
VPS35-203ENST00000562420 ZNF702PQ9H963 129 aa2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms