RNA–Protein interactions for RNA: ENST00000562298.1

VPS9D1-AS1-201, VPS9D1 antisense RNA 1, humanhuman

TSL 1 (best)

Gene VPS9D1-AS1, Length 931 nt, Biotype antisense RNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-AS1-201ENST00000562298 TRGC1P0CF51 173 aa10.6□□□□□ -0.71
VPS9D1-AS1-201ENST00000562298 NTF3P20783 257 aa10.6□□□□□ -0.71
VPS9D1-AS1-201ENST00000562298 Q6ZRU5 148 aa10.6□□□□□ -0.71
VPS9D1-AS1-201ENST00000562298 SPACA4Q8TDM5 124 aa10.6□□□□□ -0.71
VPS9D1-AS1-201ENST00000562298 AP5S1Q9NUS5 200 aa10.6□□□□□ -0.71
VPS9D1-AS1-201ENST00000562298 XKRY2A2RUG3 117 aa10.59□□□□□ -0.71
VPS9D1-AS1-201ENST00000562298 CTRLP40313 264 aa10.59□□□□□ -0.71
VPS9D1-AS1-201ENST00000562298 MEF2BQ02080 365 aaPredicted RBP10.59□□□□□ -0.71
VPS9D1-AS1-201ENST00000562298 C15orf56Q8N910 161 aa10.59□□□□□ -0.71
VPS9D1-AS1-201ENST00000562298 TNXBP22105 4242 aa10.58□□□□□ -0.72
VPS9D1-AS1-201ENST00000562298 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.58□□□□□ -0.72
VPS9D1-AS1-201ENST00000562298 UBE2L6O14933 153 aa10.58□□□□□ -0.72
VPS9D1-AS1-201ENST00000562298 IFNA1P01562 189 aa10.58□□□□□ -0.72
VPS9D1-AS1-201ENST00000562298 AMTP48728 403 aa10.58□□□□□ -0.72
VPS9D1-AS1-201ENST00000562298 C9orf62Q8N4C0 152 aa10.58□□□□□ -0.72
VPS9D1-AS1-201ENST00000562298 RNF185Q96GF1 192 aa10.58□□□□□ -0.72
VPS9D1-AS1-201ENST00000562298 PDE6DO43924 150 aa10.57□□□□□ -0.72
VPS9D1-AS1-201ENST00000562298 SULT1A2P50226 295 aa10.57□□□□□ -0.72
VPS9D1-AS1-201ENST00000562298 COTL1Q14019 142 aa10.57□□□□□ -0.72
VPS9D1-AS1-201ENST00000562298 WDR73Q6P4I2 378 aa10.57□□□□□ -0.72
VPS9D1-AS1-201ENST00000562298 DPH3Q96FX2 82 aa10.57□□□□□ -0.72
VPS9D1-AS1-201ENST00000562298 MED9Q9NWA0 146 aa10.57□□□□□ -0.72
VPS9D1-AS1-201ENST00000562298 TRAV26-2A0A0B4J265 109 aa10.56□□□□□ -0.72
VPS9D1-AS1-201ENST00000562298 GAGE12HA6NDE8 117 aa10.56□□□□□ -0.72
VPS9D1-AS1-201ENST00000562298 NUDT10Q8NFP7 164 aa10.56□□□□□ -0.72
VPS9D1-AS1-201ENST00000562298 NUDT11Q96G61 164 aa10.56□□□□□ -0.72
VPS9D1-AS1-201ENST00000562298 CNFNQ9BYD5 112 aa10.56□□□□□ -0.72
VPS9D1-AS1-201ENST00000562298 TEX46H3BTG2 121 aa10.55□□□□□ -0.72
VPS9D1-AS1-201ENST00000562298 TWIST1Q15672 202 aa10.55□□□□□ -0.72
VPS9D1-AS1-201ENST00000562298 GATD1Q8NB37 220 aa10.55□□□□□ -0.72
VPS9D1-AS1-201ENST00000562298 PLAC8Q9NZF1 115 aa10.55□□□□□ -0.72
VPS9D1-AS1-201ENST00000562298 IGKV3OR2-268A0A0C4DH90 116 aa10.54□□□□□ -0.72
VPS9D1-AS1-201ENST00000562298 PHOX2AO14813 284 aa10.54□□□□□ -0.72
VPS9D1-AS1-201ENST00000562298 BCL2P10415 239 aa10.54□□□□□ -0.72
VPS9D1-AS1-201ENST00000562298 COX6A2Q02221 97 aa10.54□□□□□ -0.72
VPS9D1-AS1-201ENST00000562298 Q6ZNX1 250 aa10.54□□□□□ -0.72
VPS9D1-AS1-201ENST00000562298 BIN3Q9NQY0 253 aa10.54□□□□□ -0.72
VPS9D1-AS1-201ENST00000562298 HIGD2BQ4VC39 106 aa10.53□□□□□ -0.72
VPS9D1-AS1-201ENST00000562298 EIF5AL1Q6IS14 154 aaKnown RBP10.53□□□□□ -0.72
VPS9D1-AS1-201ENST00000562298 RPL39LQ96EH5 51 aaKnown RBP10.53□□□□□ -0.72
VPS9D1-AS1-201ENST00000562298 RNASE7Q9H1E1 156 aaKnown RBP10.53□□□□□ -0.72
VPS9D1-AS1-201ENST00000562298 K7EN84 100 aa10.52□□□□□ -0.73
VPS9D1-AS1-201ENST00000562298 CFAP161Q6P656 301 aa10.52□□□□□ -0.73
VPS9D1-AS1-201ENST00000562298 PRSS3P2Q8NHM4 247 aa10.52□□□□□ -0.73
VPS9D1-AS1-201ENST00000562298 CHCHD10Q8WYQ3 142 aaPredicted RBP10.52□□□□□ -0.73
VPS9D1-AS1-201ENST00000562298 RPP21Q9H633 154 aaKnown RBP10.52□□□□□ -0.73
VPS9D1-AS1-201ENST00000562298 LRP2P98164 4655 aa10.52□□□□□ -0.73
VPS9D1-AS1-201ENST00000562298 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.51□□□□□ -0.73
VPS9D1-AS1-201ENST00000562298 IGKV2-29A2NJV5 120 aaPredicted RBP10.51□□□□□ -0.73
VPS9D1-AS1-201ENST00000562298 RPS10P46783 165 aaKnown RBP10.51□□□□□ -0.73
VPS9D1-AS1-201ENST00000562298 FOXA3P55318 350 aaPredicted RBP10.51□□□□□ -0.73
VPS9D1-AS1-201ENST00000562298 GTSF1Q8WW33 167 aa10.51□□□□□ -0.73
VPS9D1-AS1-201ENST00000562298 NDUFS6O75380 124 aaKnown RBP10.5□□□□□ -0.73
VPS9D1-AS1-201ENST00000562298 AMMECR1LQ6DCA0 310 aa10.5□□□□□ -0.73
VPS9D1-AS1-201ENST00000562298 OCC1Q8TAD7 63 aa10.5□□□□□ -0.73
VPS9D1-AS1-201ENST00000562298 C7orf33Q8WU49 177 aa10.5□□□□□ -0.73
VPS9D1-AS1-201ENST00000562298 GVQW2A0A096LPI5 108 aaPredicted RBP10.49□□□□□ -0.73
VPS9D1-AS1-201ENST00000562298 IGKV2-24A0A0C4DH68 120 aa10.49□□□□□ -0.73
VPS9D1-AS1-201ENST00000562298 NCR2O95944 276 aa10.49□□□□□ -0.73
VPS9D1-AS1-201ENST00000562298 APCSP02743 223 aa10.49□□□□□ -0.73
VPS9D1-AS1-201ENST00000562298 MAJINQ3KP22 176 aa10.49□□□□□ -0.73
VPS9D1-AS1-201ENST00000562298 RNASEKQ6P5S7 137 aaKnown RBP10.49□□□□□ -0.73
VPS9D1-AS1-201ENST00000562298 FGF6P10767 208 aa10.48□□□□□ -0.73
VPS9D1-AS1-201ENST00000562298 FOXI1Q12951 378 aa10.48□□□□□ -0.73
VPS9D1-AS1-201ENST00000562298 RNF213Q63HN8 5207 aa10.48□□□□□ -0.73
VPS9D1-AS1-201ENST00000562298 SDHAF1A6NFY7 115 aa10.47□□□□□ -0.73
VPS9D1-AS1-201ENST00000562298 H7C423 109 aa10.47□□□□□ -0.73
VPS9D1-AS1-201ENST00000562298 PRR3P79522 188 aaKnown RBP10.47□□□□□ -0.73
VPS9D1-AS1-201ENST00000562298 STPG4Q8N801 248 aa10.47□□□□□ -0.73
VPS9D1-AS1-201ENST00000562298 A0A096LNI7 61 aa10.46□□□□□ -0.73
VPS9D1-AS1-201ENST00000562298 TAGLN2P37802 199 aaKnown RBP10.46□□□□□ -0.73
VPS9D1-AS1-201ENST00000562298 FAM231BA6NCW3 169 aa10.45□□□□□ -0.74
VPS9D1-AS1-201ENST00000562298 TEX261Q6UWH6 196 aa10.45□□□□□ -0.74
VPS9D1-AS1-201ENST00000562298 SMIM15Q7Z3B0 74 aa10.45□□□□□ -0.74
VPS9D1-AS1-201ENST00000562298 SLC51BQ86UW2 128 aa10.45□□□□□ -0.74
VPS9D1-AS1-201ENST00000562298 OR5A1Q8NGJ0 315 aa10.45□□□□□ -0.74
VPS9D1-AS1-201ENST00000562298 LYPD6BQ8NI32 183 aa10.45□□□□□ -0.74
VPS9D1-AS1-201ENST00000562298 GAS8-AS1O95177 125 aa10.44□□□□□ -0.74
VPS9D1-AS1-201ENST00000562298 ZNF25P17030 456 aaPredicted RBP10.44□□□□□ -0.74
VPS9D1-AS1-201ENST00000562298 XCL1P47992 114 aa10.44□□□□□ -0.74
VPS9D1-AS1-201ENST00000562298 ODF1Q14990 250 aa10.44□□□□□ -0.74
VPS9D1-AS1-201ENST00000562298 LINC01600Q96MT4 127 aa10.44□□□□□ -0.74
VPS9D1-AS1-201ENST00000562298 TRBV6-5A0A0K0K1A5 114 aa10.43□□□□□ -0.74
VPS9D1-AS1-201ENST00000562298 LINC00959A0A1B0GUT2 108 aa10.43□□□□□ -0.74
VPS9D1-AS1-201ENST00000562298 I3L3M4 83 aa10.43□□□□□ -0.74
VPS9D1-AS1-201ENST00000562298 CCL25O15444 150 aa10.43□□□□□ -0.74
VPS9D1-AS1-201ENST00000562298 TCTE3Q8IZS6 198 aa10.43□□□□□ -0.74
VPS9D1-AS1-201ENST00000562298 LINC00526Q96FQ7 95 aa10.43□□□□□ -0.74
VPS9D1-AS1-201ENST00000562298 GATCO43716 136 aaKnown RBP10.42□□□□□ -0.74
VPS9D1-AS1-201ENST00000562298 TSHBP01222 138 aa10.42□□□□□ -0.74
VPS9D1-AS1-201ENST00000562298 ESDP10768 282 aa10.42□□□□□ -0.74
VPS9D1-AS1-201ENST00000562298 PMCHP20382 165 aa10.42□□□□□ -0.74
VPS9D1-AS1-201ENST00000562298 FAM231DQ6ZW35 169 aa10.42□□□□□ -0.74
VPS9D1-AS1-201ENST00000562298 BTF3L4Q96K17 158 aa10.41□□□□□ -0.74
VPS9D1-AS1-201ENST00000562298 TMEM242Q9NWH2 141 aa10.41□□□□□ -0.74
VPS9D1-AS1-201ENST00000562298 IGHV1-58A0A0C4DH39 117 aa10.4□□□□□ -0.74
VPS9D1-AS1-201ENST00000562298 A8MWL6 223 aa10.4□□□□□ -0.74
VPS9D1-AS1-201ENST00000562298 TMEM101Q96IK0 257 aa10.4□□□□□ -0.74
VPS9D1-AS1-201ENST00000562298 LINC00474Q9P2X8 69 aa10.4□□□□□ -0.74
VPS9D1-AS1-201ENST00000562298 TMEM250H0YL14 139 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms