RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 LAMTOR2Q9Y2Q5 125 aa6.79□□□□□ -1.32
VPS39-205ENST00000562258 hDV102S1A0JD36 115 aa6.79□□□□□ -1.32
VPS39-205ENST00000562258 SMIM9A6NGZ8 99 aa6.79□□□□□ -1.32
VPS39-205ENST00000562258 CEMP1Q6PRD7 247 aaPredicted RBP6.79□□□□□ -1.32
VPS39-205ENST00000562258 C11orf21Q9P2W6 132 aa6.79□□□□□ -1.32
VPS39-205ENST00000562258 RPL24P83731 157 aaKnown RBP6.79□□□□□ -1.32
VPS39-205ENST00000562258 MDFIQ99750 246 aa6.79□□□□□ -1.32
VPS39-205ENST00000562258 LBHQ53QV2 105 aaPredicted RBP6.78□□□□□ -1.32
VPS39-205ENST00000562258 IGLV2-8P01709 118 aa6.78□□□□□ -1.32
VPS39-205ENST00000562258 TIMM21Q9BVV7 248 aa6.78□□□□□ -1.32
VPS39-205ENST00000562258 KIR2DL5BA0A0G2JN68 375 aa6.77□□□□□ -1.33
VPS39-205ENST00000562258 KIR2DL5BA0A0G2JPC4 375 aa6.77□□□□□ -1.33
VPS39-205ENST00000562258 COL5A1-AS1Q5SY13 56 aa6.77□□□□□ -1.33
VPS39-205ENST00000562258 KIR2DL5AQ8N109 375 aa6.77□□□□□ -1.33
VPS39-205ENST00000562258 SLC25A29Q8N8R3 303 aa6.77□□□□□ -1.33
VPS39-205ENST00000562258 Q8N976 141 aa6.77□□□□□ -1.33
VPS39-205ENST00000562258 KIR2DL5BQ8NHK3 375 aa6.77□□□□□ -1.33
VPS39-205ENST00000562258 RASL10AQ92737 203 aa6.77□□□□□ -1.33
VPS39-205ENST00000562258 MLST8Q9BVC4 326 aa6.77□□□□□ -1.33
VPS39-205ENST00000562258 LOC100131303A0A0U1RQF7 123 aa6.77□□□□□ -1.33
VPS39-205ENST00000562258 C19orf71A6NCJ1 209 aa6.77□□□□□ -1.33
VPS39-205ENST00000562258 LYRM9A8MSI8 78 aa6.77□□□□□ -1.33
VPS39-205ENST00000562258 FGF6P10767 208 aa6.77□□□□□ -1.33
VPS39-205ENST00000562258 PRSS29PA6NIE9 313 aa6.77□□□□□ -1.33
VPS39-205ENST00000562258 MAJINQ3KP22 176 aa6.77□□□□□ -1.33
VPS39-205ENST00000562258 KPRPQ5T749 579 aaPredicted RBP6.77□□□□□ -1.33
VPS39-205ENST00000562258 PET117Q6UWS5 81 aa6.77□□□□□ -1.33
VPS39-205ENST00000562258 RMI2Q96E14 147 aa6.77□□□□□ -1.33
VPS39-205ENST00000562258 UQCR10Q9UDW1 63 aa6.77□□□□□ -1.33
VPS39-205ENST00000562258 TRAV4A0A0B4J268 109 aa6.76□□□□□ -1.33
VPS39-205ENST00000562258 SMIM13P0DJ93 91 aa6.76□□□□□ -1.33
VPS39-205ENST00000562258 GATD1Q8NB37 220 aa6.76□□□□□ -1.33
VPS39-205ENST00000562258 CITED1Q99966 193 aa6.76□□□□□ -1.33
VPS39-205ENST00000562258 C20orf78Q9BR46 151 aa6.76□□□□□ -1.33
VPS39-205ENST00000562258 TMEM238LA0A1B0GVL6 79 aa6.76□□□□□ -1.33
VPS39-205ENST00000562258 A6NJY4 79 aa6.76□□□□□ -1.33
VPS39-205ENST00000562258 SYS1-DBNDD2H3BUS1 97 aa6.76□□□□□ -1.33
VPS39-205ENST00000562258 PMVKQ15126 192 aa6.76□□□□□ -1.33
VPS39-205ENST00000562258 OPRPNQ99935 248 aaPredicted RBP6.76□□□□□ -1.33
VPS39-205ENST00000562258 MRPL35Q9NZE8 188 aaKnown RBP6.76□□□□□ -1.33
VPS39-205ENST00000562258 LINC01549A6NIU2 74 aa6.76□□□□□ -1.33
VPS39-205ENST00000562258 S100A7L2Q5SY68 101 aa6.76□□□□□ -1.33
VPS39-205ENST00000562258 CDPF1Q6NVV7 123 aa6.76□□□□□ -1.33
VPS39-205ENST00000562258 Q6ZTC4 211 aa6.76□□□□□ -1.33
VPS39-205ENST00000562258 JOSD1Q15040 202 aaPredicted RBP6.76□□□□□ -1.33
VPS39-205ENST00000562258 IGLV2-11P01706 119 aa6.75□□□□□ -1.33
VPS39-205ENST00000562258 COX6CP09669 75 aa6.75□□□□□ -1.33
VPS39-205ENST00000562258 DAZ2Q13117 558 aaKnown RBP6.75□□□□□ -1.33
VPS39-205ENST00000562258 Q6ZWC4 215 aa6.75□□□□□ -1.33
VPS39-205ENST00000562258 DAZ4Q86SG3 579 aaKnown RBP6.75□□□□□ -1.33
VPS39-205ENST00000562258 TMEM141Q96I45 108 aa6.75□□□□□ -1.33
VPS39-205ENST00000562258 DAZ3Q9NR90 486 aaKnown RBP6.75□□□□□ -1.33
VPS39-205ENST00000562258 ZNF580Q9UK33 172 aa6.75□□□□□ -1.33
VPS39-205ENST00000562258 STAB2Q8WWQ8 2551 aa6.75□□□□□ -1.33
VPS39-205ENST00000562258 TRAV10A0A0B4J240 114 aa6.75□□□□□ -1.33
VPS39-205ENST00000562258 SPINK8P0C7L1 97 aa6.75□□□□□ -1.33
VPS39-205ENST00000562258 A0A0J9YXV3 536 aa6.75□□□□□ -1.33
VPS39-205ENST00000562258 LECT2O14960 151 aa6.75□□□□□ -1.33
VPS39-205ENST00000562258 PLNP26678 52 aa6.75□□□□□ -1.33
VPS39-205ENST00000562258 ZFP2Q6ZN57 461 aa6.75□□□□□ -1.33
VPS39-205ENST00000562258 C1orf158Q8N1D5 194 aa6.75□□□□□ -1.33
VPS39-205ENST00000562258 ODF3Q96PU9 254 aa6.75□□□□□ -1.33
VPS39-205ENST00000562258 KLLNB2CW77 178 aa6.74□□□□□ -1.33
VPS39-205ENST00000562258 CTRLP40313 264 aa6.74□□□□□ -1.33
VPS39-205ENST00000562258 CYSRT1A8MQ03 144 aa6.74□□□□□ -1.33
VPS39-205ENST00000562258 MRPS12O15235 138 aaKnown RBP6.74□□□□□ -1.33
VPS39-205ENST00000562258 RPL13AP40429 203 aaKnown RBP6.74□□□□□ -1.33
VPS39-205ENST00000562258 RNASE3P12724 160 aaKnown RBP6.74□□□□□ -1.33
VPS39-205ENST00000562258 GTF2H5Q6ZYL4 71 aa6.74□□□□□ -1.33
VPS39-205ENST00000562258 SH2D6Q7Z4S9 175 aa6.74□□□□□ -1.33
VPS39-205ENST00000562258 EDA2RQ9HAV5 297 aa6.74□□□□□ -1.33
VPS39-205ENST00000562258 CFAP126Q5VTH2 177 aa6.73□□□□□ -1.33
VPS39-205ENST00000562258 LINC00269Q8N2A0 174 aa6.73□□□□□ -1.33
VPS39-205ENST00000562258 CST9LQ9H4G1 147 aa6.73□□□□□ -1.33
VPS39-205ENST00000562258 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.73□□□□□ -1.33
VPS39-205ENST00000562258 C10orf91Q5T1B1 145 aa6.73□□□□□ -1.33
VPS39-205ENST00000562258 LGALS9BQ3B8N2 356 aa6.72□□□□□ -1.33
VPS39-205ENST00000562258 GAGE2EQ4V326 116 aa6.72□□□□□ -1.33
VPS39-205ENST00000562258 ZNF664Q8N3J9 261 aa6.72□□□□□ -1.33
VPS39-205ENST00000562258 CLUHP3Q96NS8 147 aa6.72□□□□□ -1.33
VPS39-205ENST00000562258 NAA38Q9BRA0 125 aaKnown RBP6.72□□□□□ -1.33
VPS39-205ENST00000562258 DKK2Q9UBU2 259 aa6.72□□□□□ -1.33
VPS39-205ENST00000562258 GAGE2DQ9UEU5 116 aa6.72□□□□□ -1.33
VPS39-205ENST00000562258 FBN2P35556 2912 aa6.72□□□□□ -1.33
VPS39-205ENST00000562258 Q0VG73 95 aa6.72□□□□□ -1.33
VPS39-205ENST00000562258 U3KQK5 164 aa6.72□□□□□ -1.33
VPS39-205ENST00000562258 DNAJC30Q96LL9 226 aa6.72□□□□□ -1.33
VPS39-205ENST00000562258 CAMK2N2Q96S95 79 aa6.72□□□□□ -1.33
VPS39-205ENST00000562258 NHP2Q9NX24 153 aaKnown RBP6.72□□□□□ -1.33
VPS39-205ENST00000562258 TRBV10-1A0A0K0K1A3 114 aa6.72□□□□□ -1.33
VPS39-205ENST00000562258 DNAL4O96015 105 aa6.72□□□□□ -1.33
VPS39-205ENST00000562258 CRYGDP07320 174 aa6.72□□□□□ -1.33
VPS39-205ENST00000562258 IGLC6P0CF74 106 aa6.72□□□□□ -1.33
VPS39-205ENST00000562258 PLEKHB2Q96CS7 222 aa6.72□□□□□ -1.33
VPS39-205ENST00000562258 CCL25O15444 150 aa6.71□□□□□ -1.33
VPS39-205ENST00000562258 FHL3Q13643 280 aa6.71□□□□□ -1.33
VPS39-205ENST00000562258 LINC00173Q6ZV60 143 aa6.71□□□□□ -1.33
VPS39-205ENST00000562258 SBSPONQ8IVN8 264 aa6.71□□□□□ -1.33
VPS39-205ENST00000562258 COPS9Q8WXC6 57 aa6.71□□□□□ -1.33
VPS39-205ENST00000562258 CR1P17927 2039 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms