RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 FAM231BA6NCW3 169 aa3.95□□□□□ -1.78
VPS13C-209ENST00000560637 LECT2O14960 151 aa3.95□□□□□ -1.78
VPS13C-209ENST00000560637 CCL18P55774 89 aa3.95□□□□□ -1.78
VPS13C-209ENST00000560637 MRPL23Q16540 153 aaKnown RBP3.95□□□□□ -1.78
VPS13C-209ENST00000560637 STPG4Q8N801 248 aa3.95□□□□□ -1.78
VPS13C-209ENST00000560637 HIST1H2BLQ99880 126 aa3.95□□□□□ -1.78
VPS13C-209ENST00000560637 LY6G6CO95867 125 aa3.94□□□□□ -1.78
VPS13C-209ENST00000560637 LGALS3P17931 250 aaKnown RBP3.94□□□□□ -1.78
VPS13C-209ENST00000560637 SPATA45Q537H7 98 aa3.94□□□□□ -1.78
VPS13C-209ENST00000560637 PAPPA-AS1Q5QFB9 102 aa3.94□□□□□ -1.78
VPS13C-209ENST00000560637 CELA1Q9UNI1 258 aa3.94□□□□□ -1.78
VPS13C-209ENST00000560637 ICOSQ9Y6W8 199 aa3.94□□□□□ -1.78
VPS13C-209ENST00000560637 C10orf91Q5T1B1 145 aa3.94□□□□□ -1.78
VPS13C-209ENST00000560637 CHTOPQ9Y3Y2 248 aaKnown RBP3.94□□□□□ -1.78
VPS13C-209ENST00000560637 TRBV7-3A0A075B6L6 115 aa3.94□□□□□ -1.78
VPS13C-209ENST00000560637 C3orf79P0CE67 100 aa3.94□□□□□ -1.78
VPS13C-209ENST00000560637 CFAP126Q5VTH2 177 aa3.94□□□□□ -1.78
VPS13C-209ENST00000560637 VPS13CQ709C8 3753 aa3.94□□□□□ -1.78
VPS13C-209ENST00000560637 MIFP14174 115 aa3.93□□□□□ -1.78
VPS13C-209ENST00000560637 GCSHP23434 173 aa3.93□□□□□ -1.78
VPS13C-209ENST00000560637 SMAGPQ0VAQ4 97 aa3.93□□□□□ -1.78
VPS13C-209ENST00000560637 TMEM97Q5BJF2 176 aa3.93□□□□□ -1.78
VPS13C-209ENST00000560637 PET117Q6UWS5 81 aa3.93□□□□□ -1.78
VPS13C-209ENST00000560637 OR13C6PQ8NH95 151 aa3.93□□□□□ -1.78
VPS13C-209ENST00000560637 Q9UF83 564 aa3.93□□□□□ -1.78
VPS13C-209ENST00000560637 PKD1L1Q8TDX9 2849 aa3.93□□□□□ -1.78
VPS13C-209ENST00000560637 NXPH4O95158 308 aa3.93□□□□□ -1.78
VPS13C-209ENST00000560637 IGLC6P0CF74 106 aa3.93□□□□□ -1.78
VPS13C-209ENST00000560637 HOXA5P20719 270 aa3.93□□□□□ -1.78
VPS13C-209ENST00000560637 PFN2P35080 140 aa3.93□□□□□ -1.78
VPS13C-209ENST00000560637 CTRLP40313 264 aa3.93□□□□□ -1.78
VPS13C-209ENST00000560637 C6orf226Q5I0X4 101 aa3.93□□□□□ -1.78
VPS13C-209ENST00000560637 KPRPQ5T749 579 aaPredicted RBP3.93□□□□□ -1.78
VPS13C-209ENST00000560637 HIST3H2BBQ8N257 126 aa3.93□□□□□ -1.78
VPS13C-209ENST00000560637 IGHV1-24A0A0C4DH33 117 aa3.93□□□□□ -1.78
VPS13C-209ENST00000560637 BEAN1Q3B7T3 259 aa3.93□□□□□ -1.78
VPS13C-209ENST00000560637 ERASQ7Z444 233 aa3.93□□□□□ -1.78
VPS13C-209ENST00000560637 RAB37Q96AX2 223 aa3.93□□□□□ -1.78
VPS13C-209ENST00000560637 TRAV2A0A0B4J234 112 aa3.92□□□□□ -1.78
VPS13C-209ENST00000560637 ZNF25P17030 456 aaPredicted RBP3.92□□□□□ -1.78
VPS13C-209ENST00000560637 HINT1P49773 126 aaPredicted RBP3.92□□□□□ -1.78
VPS13C-209ENST00000560637 Q8N8P6 123 aa3.92□□□□□ -1.78
VPS13C-209ENST00000560637 LINC00526Q96FQ7 95 aa3.92□□□□□ -1.78
VPS13C-209ENST00000560637 CHAC1Q9BUX1 264 aa3.92□□□□□ -1.78
VPS13C-209ENST00000560637 K7EIL1 84 aa3.92□□□□□ -1.78
VPS13C-209ENST00000560637 FGF6P10767 208 aa3.92□□□□□ -1.78
VPS13C-209ENST00000560637 RASL10AQ92737 203 aa3.92□□□□□ -1.78
VPS13C-209ENST00000560637 MRPL35Q9NZE8 188 aaKnown RBP3.92□□□□□ -1.78
VPS13C-209ENST00000560637 DKK2Q9UBU2 259 aa3.92□□□□□ -1.78
VPS13C-209ENST00000560637 TRAV4A0A0B4J268 109 aa3.92□□□□□ -1.78
VPS13C-209ENST00000560637 KIR2DL5BA0A0G2JN68 375 aa3.92□□□□□ -1.78
VPS13C-209ENST00000560637 KIR2DL5BA0A0G2JPC4 375 aa3.92□□□□□ -1.78
VPS13C-209ENST00000560637 A0A0J9YXV3 536 aa3.92□□□□□ -1.78
VPS13C-209ENST00000560637 CKS1BP61024 79 aa3.92□□□□□ -1.78
VPS13C-209ENST00000560637 Q6ZWC4 215 aa3.92□□□□□ -1.78
VPS13C-209ENST00000560637 KIR2DL5AQ8N109 375 aa3.92□□□□□ -1.78
VPS13C-209ENST00000560637 KIR2DL5BQ8NHK3 375 aa3.92□□□□□ -1.78
VPS13C-209ENST00000560637 NDUFAF3Q9BU61 184 aa3.92□□□□□ -1.78
VPS13C-209ENST00000560637 SPINK8P0C7L1 97 aa3.91□□□□□ -1.78
VPS13C-209ENST00000560637 LINC00158P58513 81 aa3.91□□□□□ -1.78
VPS13C-209ENST00000560637 ZFP2Q6ZN57 461 aa3.91□□□□□ -1.78
VPS13C-209ENST00000560637 Q6ZSN1 163 aa3.91□□□□□ -1.78
VPS13C-209ENST00000560637 HIST1H4GQ99525 98 aa3.91□□□□□ -1.78
VPS13C-209ENST00000560637 TTTY13Q9BZ97 58 aa3.91□□□□□ -1.78
VPS13C-209ENST00000560637 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.91□□□□□ -1.78
VPS13C-209ENST00000560637 DPM2O94777 84 aa3.91□□□□□ -1.78
VPS13C-209ENST00000560637 CRYGDP07320 174 aa3.91□□□□□ -1.78
VPS13C-209ENST00000560637 SCGB1C2P0DMR2 95 aa3.91□□□□□ -1.78
VPS13C-209ENST00000560637 SS18Q15532 418 aa3.91□□□□□ -1.78
VPS13C-209ENST00000560637 NEXN-AS1Q8NBZ9 246 aa3.91□□□□□ -1.78
VPS13C-209ENST00000560637 WFDC9Q8NEX5 89 aa3.91□□□□□ -1.78
VPS13C-209ENST00000560637 C20orf144Q9BQM9 153 aa3.91□□□□□ -1.78
VPS13C-209ENST00000560637 APOMO95445 188 aa3.91□□□□□ -1.78
VPS13C-209ENST00000560637 IGKCP01834 107 aa3.91□□□□□ -1.78
VPS13C-209ENST00000560637 LINC00269Q8N2A0 174 aa3.91□□□□□ -1.78
VPS13C-209ENST00000560637 CHCHD1Q96BP2 118 aaKnown RBP3.91□□□□□ -1.78
VPS13C-209ENST00000560637 RNF183Q96D59 192 aa3.91□□□□□ -1.78
VPS13C-209ENST00000560637 ODF3Q96PU9 254 aa3.91□□□□□ -1.78
VPS13C-209ENST00000560637 KLK5Q9Y337 293 aaPredicted RBP3.91□□□□□ -1.78
VPS13C-209ENST00000560637 ZNF815PA8K554 130 aa3.9□□□□□ -1.78
VPS13C-209ENST00000560637 LYRM9A8MSI8 78 aa3.9□□□□□ -1.78
VPS13C-209ENST00000560637 H3BRM9 83 aa3.9□□□□□ -1.78
VPS13C-209ENST00000560637 SYS1-DBNDD2H3BUS1 97 aa3.9□□□□□ -1.78
VPS13C-209ENST00000560637 DAZ2Q13117 558 aaKnown RBP3.9□□□□□ -1.78
VPS13C-209ENST00000560637 HIGD2BQ4VC39 106 aa3.9□□□□□ -1.78
VPS13C-209ENST00000560637 DNLZQ5SXM8 178 aa3.9□□□□□ -1.78
VPS13C-209ENST00000560637 DAZ4Q86SG3 579 aaKnown RBP3.9□□□□□ -1.78
VPS13C-209ENST00000560637 RNASE8Q8TDE3 154 aaKnown RBP3.9□□□□□ -1.78
VPS13C-209ENST00000560637 LINC00467Q9BRT7 94 aa3.9□□□□□ -1.78
VPS13C-209ENST00000560637 DAZ3Q9NR90 486 aaKnown RBP3.9□□□□□ -1.78
VPS13C-209ENST00000560637 SMIM9A6NGZ8 99 aa3.9□□□□□ -1.79
VPS13C-209ENST00000560637 Q6ZUT4 128 aa3.9□□□□□ -1.79
VPS13C-209ENST00000560637 OVOL2Q9BRP0 275 aa3.9□□□□□ -1.79
VPS13C-209ENST00000560637 TGP01266 2768 aa3.9□□□□□ -1.79
VPS13C-209ENST00000560637 TRBV7-9A0A0J9YWB2 115 aa3.9□□□□□ -1.79
VPS13C-209ENST00000560637 C5orf52A6NGY3 159 aa3.9□□□□□ -1.79
VPS13C-209ENST00000560637 M0QY20 66 aa3.9□□□□□ -1.79
VPS13C-209ENST00000560637 PSMB2P49721 201 aa3.9□□□□□ -1.79
VPS13C-209ENST00000560637 PYY3Q5JQD4 70 aa3.9□□□□□ -1.79
VPS13C-209ENST00000560637 U3KQK5 164 aa3.9□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms