RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 TGIF2-C20orf24A0A0A6YYL0 155 aa6.88□□□□□ -1.31
USP3-216ENST00000559873 RPL32P62910 135 aaKnown RBP6.88□□□□□ -1.31
USP3-216ENST00000559873 SMAGPQ0VAQ4 97 aa6.88□□□□□ -1.31
USP3-216ENST00000559873 ATRAIDQ6UW56 229 aa6.88□□□□□ -1.31
USP3-216ENST00000559873 NIT1Q86X76 327 aa6.88□□□□□ -1.31
USP3-216ENST00000559873 TMEM243Q9BU79 118 aa6.88□□□□□ -1.31
USP3-216ENST00000559873 MAP1LC3AQ9H492 121 aa6.88□□□□□ -1.31
USP3-216ENST00000559873 KMT2AQ03164 3969 aa6.87□□□□□ -1.31
USP3-216ENST00000559873 TMEM262E9PQX1 116 aa6.87□□□□□ -1.31
USP3-216ENST00000559873 M0R2N4 97 aa6.87□□□□□ -1.31
USP3-216ENST00000559873 GAS8-AS1O95177 125 aa6.87□□□□□ -1.31
USP3-216ENST00000559873 NPYP01303 97 aa6.87□□□□□ -1.31
USP3-216ENST00000559873 POLR2KP53803 58 aaKnown RBP6.87□□□□□ -1.31
USP3-216ENST00000559873 CBLN2Q8IUK8 224 aa6.87□□□□□ -1.31
USP3-216ENST00000559873 SMIM2Q9BVW6 85 aa6.87□□□□□ -1.31
USP3-216ENST00000559873 MRPL18Q9H0U6 180 aaKnown RBP6.87□□□□□ -1.31
USP3-216ENST00000559873 H7C423 109 aa6.86□□□□□ -1.31
USP3-216ENST00000559873 IGHV3-30P01768 117 aa6.86□□□□□ -1.31
USP3-216ENST00000559873 IGHV3-33P01772 117 aa6.86□□□□□ -1.31
USP3-216ENST00000559873 IGHV3-30-3P0DP02 117 aa6.86□□□□□ -1.31
USP3-216ENST00000559873 IGHV3-30-5P0DP03 117 aa6.86□□□□□ -1.31
USP3-216ENST00000559873 RAB5AP20339 215 aa6.86□□□□□ -1.31
USP3-216ENST00000559873 S100A1P23297 94 aa6.86□□□□□ -1.31
USP3-216ENST00000559873 FABP9Q0Z7S8 132 aa6.86□□□□□ -1.31
USP3-216ENST00000559873 LAGE3Q14657 143 aa6.86□□□□□ -1.31
USP3-216ENST00000559873 Q6ZR54 194 aa6.86□□□□□ -1.31
USP3-216ENST00000559873 NTM-AS1Q6ZSK4 140 aa6.86□□□□□ -1.31
USP3-216ENST00000559873 NFE4Q86UQ8 179 aa6.86□□□□□ -1.31
USP3-216ENST00000559873 TMEM18Q96B42 140 aa6.86□□□□□ -1.31
USP3-216ENST00000559873 TRAPPC1Q9Y5R8 145 aa6.86□□□□□ -1.31
USP3-216ENST00000559873 RYR3Q15413 4870 aa6.85□□□□□ -1.31
USP3-216ENST00000559873 TSHBP01222 138 aa6.85□□□□□ -1.31
USP3-216ENST00000559873 CRPP02741 224 aa6.85□□□□□ -1.31
USP3-216ENST00000559873 GAGE6Q13070 117 aa6.85□□□□□ -1.31
USP3-216ENST00000559873 C1orf134Q5TEV5 83 aa6.85□□□□□ -1.31
USP3-216ENST00000559873 AMMECR1LQ6DCA0 310 aa6.85□□□□□ -1.31
USP3-216ENST00000559873 C6orf223Q8N319 242 aa6.85□□□□□ -1.31
USP3-216ENST00000559873 NXT2Q9NPJ8 142 aaKnown RBP6.85□□□□□ -1.31
USP3-216ENST00000559873 K7EMI3 77 aa6.84□□□□□ -1.31
USP3-216ENST00000559873 ZNF25P17030 456 aaPredicted RBP6.84□□□□□ -1.31
USP3-216ENST00000559873 MPV17L2Q567V2 206 aa6.84□□□□□ -1.31
USP3-216ENST00000559873 RMI2Q96E14 147 aa6.84□□□□□ -1.31
USP3-216ENST00000559873 TMEM101Q96IK0 257 aa6.84□□□□□ -1.31
USP3-216ENST00000559873 TRAV8-3A0A0A6YYJ7 113 aa6.83□□□□□ -1.32
USP3-216ENST00000559873 A0A1B0GUV1 79 aa6.83□□□□□ -1.32
USP3-216ENST00000559873 PRSS47A8MTI9 375 aa6.83□□□□□ -1.32
USP3-216ENST00000559873 ATP6V1G1O75348 118 aa6.83□□□□□ -1.32
USP3-216ENST00000559873 ANGP03950 147 aaKnown RBP6.83□□□□□ -1.32
USP3-216ENST00000559873 RBX1P62877 108 aa6.83□□□□□ -1.32
USP3-216ENST00000559873 Q0VG73 95 aa6.83□□□□□ -1.32
USP3-216ENST00000559873 KIAA1644Q3SXP7 199 aa6.83□□□□□ -1.32
USP3-216ENST00000559873 ORMDL2Q53FV1 153 aa6.83□□□□□ -1.32
USP3-216ENST00000559873 RNASEKQ6P5S7 137 aaKnown RBP6.83□□□□□ -1.32
USP3-216ENST00000559873 Q8N8P6 123 aa6.83□□□□□ -1.32
USP3-216ENST00000559873 YPEL4Q96NS1 127 aa6.83□□□□□ -1.32
USP3-216ENST00000559873 KRTAP1-5Q9BYS1 174 aa6.83□□□□□ -1.32
USP3-216ENST00000559873 HYDINQ4G0P3 5121 aa6.83□□□□□ -1.32
USP3-216ENST00000559873 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.82□□□□□ -1.32
USP3-216ENST00000559873 LOC389332A0A1B0GUA5 103 aa6.82□□□□□ -1.32
USP3-216ENST00000559873 IGKV2-29A2NJV5 120 aaPredicted RBP6.82□□□□□ -1.32
USP3-216ENST00000559873 IBA57-AS1B1ANH7 110 aa6.82□□□□□ -1.32
USP3-216ENST00000559873 ESDP10768 282 aa6.82□□□□□ -1.32
USP3-216ENST00000559873 G0S2P27469 103 aa6.82□□□□□ -1.32
USP3-216ENST00000559873 LINC00336Q6ZUF6 198 aa6.82□□□□□ -1.32
USP3-216ENST00000559873 DEFB104AQ8WTQ1 72 aa6.82□□□□□ -1.32
USP3-216ENST00000559873 ALKBH7Q9BT30 221 aaPredicted RBP6.82□□□□□ -1.32
USP3-216ENST00000559873 KLK12Q9UKR0 248 aa6.82□□□□□ -1.32
USP3-216ENST00000559873 COX11Q9Y6N1 276 aa6.82□□□□□ -1.32
USP3-216ENST00000559873 FGF6P10767 208 aa6.81□□□□□ -1.32
USP3-216ENST00000559873 DGAT2L7PQ6IED9 249 aa6.81□□□□□ -1.32
USP3-216ENST00000559873 Q8N976 141 aa6.81□□□□□ -1.32
USP3-216ENST00000559873 C20orf203Q8NBC4 194 aa6.81□□□□□ -1.32
USP3-216ENST00000559873 OR5A1Q8NGJ0 315 aa6.81□□□□□ -1.32
USP3-216ENST00000559873 PRSS3P2Q8NHM4 247 aa6.81□□□□□ -1.32
USP3-216ENST00000559873 UBE2WQ96B02 151 aa6.81□□□□□ -1.32
USP3-216ENST00000559873 TM2D2Q9BX73 214 aa6.81□□□□□ -1.32
USP3-216ENST00000559873 Q9HAA7 133 aa6.81□□□□□ -1.32
USP3-216ENST00000559873 PSCAO43653 123 aa6.8□□□□□ -1.32
USP3-216ENST00000559873 MIAQ16674 131 aa6.8□□□□□ -1.32
USP3-216ENST00000559873 FA2HQ7L5A8 372 aa6.8□□□□□ -1.32
USP3-216ENST00000559873 MRPL52Q86TS9 123 aaKnown RBP6.8□□□□□ -1.32
USP3-216ENST00000559873 Q8N3U1 123 aa6.8□□□□□ -1.32
USP3-216ENST00000559873 LINC01549A6NIU2 74 aa6.79□□□□□ -1.32
USP3-216ENST00000559873 IFI27P40305 119 aaPredicted RBP6.79□□□□□ -1.32
USP3-216ENST00000559873 RAB5BP61020 215 aa6.79□□□□□ -1.32
USP3-216ENST00000559873 TIMM21Q9BVV7 248 aa6.79□□□□□ -1.32
USP3-216ENST00000559873 C1orf43Q9BWL3 253 aa6.79□□□□□ -1.32
USP3-216ENST00000559873 SPANXA1Q9NS26 97 aa6.79□□□□□ -1.32
USP3-216ENST00000559873 CYSLTR1Q9Y271 337 aa6.79□□□□□ -1.32
USP3-216ENST00000559873 SCO1O75880 301 aa6.78□□□□□ -1.32
USP3-216ENST00000559873 REG3AQ06141 175 aa6.78□□□□□ -1.32
USP3-216ENST00000559873 LINC00269Q8N2A0 174 aa6.78□□□□□ -1.32
USP3-216ENST00000559873 PRR34Q9NV39 138 aa6.78□□□□□ -1.32
USP3-216ENST00000559873 CSDC2Q9Y534 153 aaKnown RBP6.78□□□□□ -1.32
USP3-216ENST00000559873 IGKV2D-24A0A075B6R9 120 aa6.77□□□□□ -1.33
USP3-216ENST00000559873 TRAV8-4A0A0B4J246 113 aa6.77□□□□□ -1.33
USP3-216ENST00000559873 COLCA2A8K830 154 aa6.77□□□□□ -1.33
USP3-216ENST00000559873 EREGO14944 169 aa6.77□□□□□ -1.33
USP3-216ENST00000559873 RTL8CO15255 209 aa6.77□□□□□ -1.33
USP3-216ENST00000559873 CLPSL2Q6UWE3 100 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms