RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 AMTP48728 403 aa6.35□□□□□ -1.39
LDLR-210ENST00000559340 IQCJQ1A5X6 159 aa6.35□□□□□ -1.39
LDLR-210ENST00000559340 TMEM18Q96B42 140 aa6.35□□□□□ -1.39
LDLR-210ENST00000559340 TMEM243Q9BU79 118 aa6.35□□□□□ -1.39
LDLR-210ENST00000559340 CHCHD7Q9BUK0 85 aa6.35□□□□□ -1.39
LDLR-210ENST00000559340 SMIM2Q9BVW6 85 aa6.35□□□□□ -1.39
LDLR-210ENST00000559340 NXT2Q9NPJ8 142 aaKnown RBP6.35□□□□□ -1.39
LDLR-210ENST00000559340 COLCA2A8K830 154 aa6.34□□□□□ -1.39
LDLR-210ENST00000559340 TMEM262E9PQX1 116 aa6.34□□□□□ -1.39
LDLR-210ENST00000559340 H7C423 109 aa6.34□□□□□ -1.39
LDLR-210ENST00000559340 GAS8-AS1O95177 125 aa6.34□□□□□ -1.39
LDLR-210ENST00000559340 RAB5BP61020 215 aa6.34□□□□□ -1.39
LDLR-210ENST00000559340 TTC32Q5I0X7 151 aa6.34□□□□□ -1.39
LDLR-210ENST00000559340 C10orf126Q8N4M7 172 aa6.34□□□□□ -1.39
LDLR-210ENST00000559340 Q8N8P6 123 aa6.34□□□□□ -1.39
LDLR-210ENST00000559340 PRSS3P2Q8NHM4 247 aa6.34□□□□□ -1.39
LDLR-210ENST00000559340 CHCHD5Q9BSY4 110 aa6.34□□□□□ -1.39
LDLR-210ENST00000559340 ALKBH7Q9BT30 221 aaPredicted RBP6.34□□□□□ -1.39
LDLR-210ENST00000559340 CSMD3Q7Z407 3707 aa6.34□□□□□ -1.39
LDLR-210ENST00000559340 STARD9Q9P2P6 4700 aa6.34□□□□□ -1.39
LDLR-210ENST00000559340 RYR2Q92736 4967 aa6.34□□□□□ -1.4
LDLR-210ENST00000559340 A0A087WX48 190 aa6.33□□□□□ -1.4
LDLR-210ENST00000559340 LOC389332A0A1B0GUA5 103 aa6.33□□□□□ -1.4
LDLR-210ENST00000559340 SCO1O75880 301 aa6.33□□□□□ -1.4
LDLR-210ENST00000559340 PLECQ15149 4684 aaKnown RBP6.32□□□□□ -1.4
LDLR-210ENST00000559340 LINC01549A6NIU2 74 aa6.32□□□□□ -1.4
LDLR-210ENST00000559340 DNAH10OSP0CZ25 163 aa6.32□□□□□ -1.4
LDLR-210ENST00000559340 BTF3P20290 206 aaKnown RBP6.32□□□□□ -1.4
LDLR-210ENST00000559340 ORMDL2Q53FV1 153 aa6.32□□□□□ -1.4
LDLR-210ENST00000559340 LINC01556Q5JQF7 62 aa6.32□□□□□ -1.4
LDLR-210ENST00000559340 NTM-AS1Q6ZSK4 140 aa6.32□□□□□ -1.4
LDLR-210ENST00000559340 FA2HQ7L5A8 372 aa6.32□□□□□ -1.4
LDLR-210ENST00000559340 BIRC6Q9NR09 4857 aa6.32□□□□□ -1.4
LDLR-210ENST00000559340 TSHBP01222 138 aa6.31□□□□□ -1.4
LDLR-210ENST00000559340 TRGC2P03986 189 aa6.31□□□□□ -1.4
LDLR-210ENST00000559340 LAGE3Q14657 143 aa6.31□□□□□ -1.4
LDLR-210ENST00000559340 AMMECR1LQ6DCA0 310 aa6.31□□□□□ -1.4
LDLR-210ENST00000559340 DGAT2L7PQ6IED9 249 aa6.31□□□□□ -1.4
LDLR-210ENST00000559340 NIT1Q86X76 327 aa6.31□□□□□ -1.4
LDLR-210ENST00000559340 WFDC10BQ8IUB3 73 aa6.31□□□□□ -1.4
LDLR-210ENST00000559340 TMEM101Q96IK0 257 aa6.31□□□□□ -1.4
LDLR-210ENST00000559340 NBDYA0A0U1RRE5 68 aa6.3□□□□□ -1.4
LDLR-210ENST00000559340 A0A1B0GUV1 79 aa6.3□□□□□ -1.4
LDLR-210ENST00000559340 ESDP10768 282 aa6.3□□□□□ -1.4
LDLR-210ENST00000559340 ZNF25P17030 456 aaPredicted RBP6.3□□□□□ -1.4
LDLR-210ENST00000559340 IFI27P40305 119 aaPredicted RBP6.3□□□□□ -1.4
LDLR-210ENST00000559340 GAGE6Q13070 117 aa6.3□□□□□ -1.4
LDLR-210ENST00000559340 RNASEKQ6P5S7 137 aaKnown RBP6.3□□□□□ -1.4
LDLR-210ENST00000559340 EPPK1P58107 5090 aaKnown RBP6.3□□□□□ -1.4
LDLR-210ENST00000559340 SACSQ9NZJ4 4579 aa6.29□□□□□ -1.4
LDLR-210ENST00000559340 IGLV2-18A0A075B6J9 118 aa6.29□□□□□ -1.4
LDLR-210ENST00000559340 IGHV3-30P01768 117 aa6.29□□□□□ -1.4
LDLR-210ENST00000559340 IGHV3-33P01772 117 aa6.29□□□□□ -1.4
LDLR-210ENST00000559340 LINC00614P0C842 121 aa6.29□□□□□ -1.4
LDLR-210ENST00000559340 IGHV3-30-3P0DP02 117 aa6.29□□□□□ -1.4
LDLR-210ENST00000559340 IGHV3-30-5P0DP03 117 aa6.29□□□□□ -1.4
LDLR-210ENST00000559340 Q0VG73 95 aa6.29□□□□□ -1.4
LDLR-210ENST00000559340 BAGE3Q86Y29 109 aa6.29□□□□□ -1.4
LDLR-210ENST00000559340 C20orf203Q8NBC4 194 aa6.29□□□□□ -1.4
LDLR-210ENST00000559340 C18orf32Q8TCD1 76 aa6.29□□□□□ -1.4
LDLR-210ENST00000559340 DNAH1Q9P2D7 4330 aa6.29□□□□□ -1.4
LDLR-210ENST00000559340 TRAV8-3A0A0A6YYJ7 113 aa6.28□□□□□ -1.4
LDLR-210ENST00000559340 C1orf196B1AJZ1 125 aa6.28□□□□□ -1.4
LDLR-210ENST00000559340 FGF6P10767 208 aa6.28□□□□□ -1.4
LDLR-210ENST00000559340 RBX1P62877 108 aa6.28□□□□□ -1.4
LDLR-210ENST00000559340 NFE4Q86UQ8 179 aa6.28□□□□□ -1.4
LDLR-210ENST00000559340 OR5A1Q8NGJ0 315 aa6.28□□□□□ -1.4
LDLR-210ENST00000559340 DEFB104AQ8WTQ1 72 aa6.28□□□□□ -1.4
LDLR-210ENST00000559340 RMI2Q96E14 147 aa6.28□□□□□ -1.4
LDLR-210ENST00000559340 TIMM21Q9BVV7 248 aa6.28□□□□□ -1.4
LDLR-210ENST00000559340 AP5S1Q9NUS5 200 aa6.28□□□□□ -1.4
LDLR-210ENST00000559340 CYSLTR1Q9Y271 337 aa6.28□□□□□ -1.4
LDLR-210ENST00000559340 CSDC2Q9Y534 153 aaKnown RBP6.28□□□□□ -1.4
LDLR-210ENST00000559340 ALMS1Q8TCU4 4167 aa6.28□□□□□ -1.4
LDLR-210ENST00000559340 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.27□□□□□ -1.41
LDLR-210ENST00000559340 IGKV2-29A2NJV5 120 aaPredicted RBP6.27□□□□□ -1.41
LDLR-210ENST00000559340 LINC01546A6NGU7 62 aa6.27□□□□□ -1.41
LDLR-210ENST00000559340 IBA57-AS1B1ANH7 110 aa6.27□□□□□ -1.41
LDLR-210ENST00000559340 M0R2N4 97 aa6.27□□□□□ -1.41
LDLR-210ENST00000559340 CRPP02741 224 aa6.27□□□□□ -1.41
LDLR-210ENST00000559340 ANGP03950 147 aaKnown RBP6.27□□□□□ -1.41
LDLR-210ENST00000559340 MRPL52Q86TS9 123 aaKnown RBP6.27□□□□□ -1.41
LDLR-210ENST00000559340 CHCHD1Q96BP2 118 aaKnown RBP6.27□□□□□ -1.41
LDLR-210ENST00000559340 SPANXA1Q9NS26 97 aa6.27□□□□□ -1.41
LDLR-210ENST00000559340 VPS13DQ5THJ4 4388 aa6.27□□□□□ -1.41
LDLR-210ENST00000559340 NPSP0C0P6 89 aa6.26□□□□□ -1.41
LDLR-210ENST00000559340 MPV17L2Q567V2 206 aa6.26□□□□□ -1.41
LDLR-210ENST00000559340 PAPPA-AS1Q5QFB9 102 aa6.26□□□□□ -1.41
LDLR-210ENST00000559340 C2orf66Q6UXQ4 117 aa6.26□□□□□ -1.41
LDLR-210ENST00000559340 TM2D2Q9BX73 214 aa6.26□□□□□ -1.41
LDLR-210ENST00000559340 KLK12Q9UKR0 248 aa6.26□□□□□ -1.41
LDLR-210ENST00000559340 PYGO1Q9Y3Y4 419 aa6.26□□□□□ -1.41
LDLR-210ENST00000559340 COX11Q9Y6N1 276 aa6.26□□□□□ -1.41
LDLR-210ENST00000559340 TRAV8-4A0A0B4J246 113 aa6.25□□□□□ -1.41
LDLR-210ENST00000559340 CCL25O15444 150 aa6.25□□□□□ -1.41
LDLR-210ENST00000559340 HSBP1O75506 76 aa6.25□□□□□ -1.41
LDLR-210ENST00000559340 MIAQ16674 131 aa6.25□□□□□ -1.41
LDLR-210ENST00000559340 C1orf134Q5TEV5 83 aa6.25□□□□□ -1.41
LDLR-210ENST00000559340 Q6ZR54 194 aa6.25□□□□□ -1.41
LDLR-210ENST00000559340 C6orf223Q8N319 242 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms