RNA–Protein interactions for RNA: ENST00000558248.5

LRRC28-205, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 499 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-205ENST00000558248 NHP2Q9NX24 153 aaKnown RBP2.6□□□□□ -1.99
LRRC28-205ENST00000558248 IER3IP1Q9Y5U9 82 aa2.6□□□□□ -1.99
LRRC28-205ENST00000558248 IGKV1OR2-108A0A075B7D4 117 aa2.59□□□□□ -1.99
LRRC28-205ENST00000558248 TMEM235A6NFC5 223 aa2.59□□□□□ -1.99
LRRC28-205ENST00000558248 HBDP02042 147 aa2.59□□□□□ -1.99
LRRC28-205ENST00000558248 IL4P05112 153 aa2.59□□□□□ -1.99
LRRC28-205ENST00000558248 ZNF705BP0CI00 300 aaPredicted RBP2.59□□□□□ -1.99
LRRC28-205ENST00000558248 TPT1P13693 172 aaKnown RBP2.59□□□□□ -1.99
LRRC28-205ENST00000558248 HIST1H1BP16401 226 aaKnown RBP2.59□□□□□ -1.99
LRRC28-205ENST00000558248 EIF2B2P49770 351 aaKnown RBP2.59□□□□□ -1.99
LRRC28-205ENST00000558248 ZNF816Q0VGE8 651 aaPredicted RBP2.59□□□□□ -1.99
LRRC28-205ENST00000558248 FUT5Q11128 374 aa2.59□□□□□ -1.99
LRRC28-205ENST00000558248 EBI3Q14213 229 aa2.59□□□□□ -1.99
LRRC28-205ENST00000558248 DIAPH2-AS1Q14236 149 aa2.59□□□□□ -1.99
LRRC28-205ENST00000558248 SPRNQ5BIV9 151 aa2.59□□□□□ -1.99
LRRC28-205ENST00000558248 LINC01545Q5VT33 79 aa2.59□□□□□ -1.99
LRRC28-205ENST00000558248 NDUFA11Q86Y39 141 aa2.59□□□□□ -1.99
LRRC28-205ENST00000558248 DYNAPQ8N1N2 210 aa2.59□□□□□ -1.99
LRRC28-205ENST00000558248 KCNRGQ8N5I3 272 aa2.59□□□□□ -1.99
LRRC28-205ENST00000558248 COPS9Q8WXC6 57 aa2.59□□□□□ -1.99
LRRC28-205ENST00000558248 DIRC1Q969H9 104 aa2.59□□□□□ -1.99
LRRC28-205ENST00000558248 CIB3Q96Q77 187 aaPredicted RBP2.59□□□□□ -1.99
LRRC28-205ENST00000558248 LYSTQ99698 3801 aa2.59□□□□□ -1.99
LRRC28-205ENST00000558248 COMMD3Q9UBI1 195 aa2.59□□□□□ -1.99
LRRC28-205ENST00000558248 TIMM9Q9Y5J7 89 aa2.59□□□□□ -1.99
LRRC28-205ENST00000558248 DNAH3Q8TD57 4116 aa2.59□□□□□ -2
LRRC28-205ENST00000558248 KIAA1109Q2LD37 5005 aa2.58□□□□□ -2
LRRC28-205ENST00000558248 H3BQ85 93 aa2.58□□□□□ -2
LRRC28-205ENST00000558248 H3BT86 120 aa2.58□□□□□ -2
LRRC28-205ENST00000558248 ZNF14P17017 642 aaPredicted RBP2.58□□□□□ -2
LRRC28-205ENST00000558248 FUSP35637 526 aaKnown RBP eCLIP2.58□□□□□ -2
LRRC28-205ENST00000558248 FXYD2P54710 66 aa2.58□□□□□ -2
LRRC28-205ENST00000558248 TPPP2P59282 170 aa2.58□□□□□ -2
LRRC28-205ENST00000558248 KRTAP12-2P59991 146 aa2.58□□□□□ -2
LRRC28-205ENST00000558248 CDK6Q00534 326 aa2.58□□□□□ -2
LRRC28-205ENST00000558248 KHDC3LQ587J8 217 aa2.58□□□□□ -2
LRRC28-205ENST00000558248 ZNF660Q6AZW8 331 aaPredicted RBP2.58□□□□□ -2
LRRC28-205ENST00000558248 C7orf65Q6ZTY9 151 aa2.58□□□□□ -2
LRRC28-205ENST00000558248 AAED1Q7RTV5 226 aa2.58□□□□□ -2
LRRC28-205ENST00000558248 SBSPONQ8IVN8 264 aa2.58□□□□□ -2
LRRC28-205ENST00000558248 LINC00311Q8N616 119 aa2.58□□□□□ -2
LRRC28-205ENST00000558248 FAM216BQ8N7L0 139 aa2.58□□□□□ -2
LRRC28-205ENST00000558248 ST20-AS1Q8NBB2 130 aa2.58□□□□□ -2
LRRC28-205ENST00000558248 KLF14Q8TD94 323 aaPredicted RBP2.58□□□□□ -2
LRRC28-205ENST00000558248 NAA38Q9BRA0 125 aaKnown RBP2.58□□□□□ -2
LRRC28-205ENST00000558248 IGLV4-69A0A075B6H9 119 aa2.57□□□□□ -2
LRRC28-205ENST00000558248 IGKV1D-37A0A075B6S9 117 aa2.57□□□□□ -2
LRRC28-205ENST00000558248 C17orf98A8MV24 154 aa2.57□□□□□ -2
LRRC28-205ENST00000558248 K7ERJ3 54 aa2.57□□□□□ -2
LRRC28-205ENST00000558248 SDCBPO00560 298 aaPredicted RBP2.57□□□□□ -2
LRRC28-205ENST00000558248 YPEL1O60688 119 aa2.57□□□□□ -2
LRRC28-205ENST00000558248 KRTAP1-4P0C5Y4 121 aa2.57□□□□□ -2
LRRC28-205ENST00000558248 TRGC1P0CF51 173 aa2.57□□□□□ -2
LRRC28-205ENST00000558248 RPL28P46779 137 aaKnown RBP2.57□□□□□ -2
LRRC28-205ENST00000558248 HSD52Q0P140 79 aa2.57□□□□□ -2
LRRC28-205ENST00000558248 COMMD6Q7Z4G1 85 aa2.57□□□□□ -2
LRRC28-205ENST00000558248 SFT2D1Q8WV19 159 aa2.57□□□□□ -2
LRRC28-205ENST00000558248 DNAJC15Q9Y5T4 150 aa2.57□□□□□ -2
LRRC28-205ENST00000558248 NUP214P35658 2090 aaPredicted RBP2.57□□□□□ -2
LRRC28-205ENST00000558248 IGLV3-9A0A075B6K5 115 aa2.56□□□□□ -2
LRRC28-205ENST00000558248 TRBV20-1A0A075B6N2 111 aa2.56□□□□□ -2
LRRC28-205ENST00000558248 TRAV12-2A0A075B6T6 113 aa2.56□□□□□ -2
LRRC28-205ENST00000558248 A0A1B0GVG6 124 aa2.56□□□□□ -2
LRRC28-205ENST00000558248 LYRM1O43325 122 aa2.56□□□□□ -2
LRRC28-205ENST00000558248 SYNGR2O43760 224 aa2.56□□□□□ -2
LRRC28-205ENST00000558248 PMP2P02689 132 aa2.56□□□□□ -2
LRRC28-205ENST00000558248 ZNF19P17023 458 aa2.56□□□□□ -2
LRRC28-205ENST00000558248 TMEM258P61165 79 aa2.56□□□□□ -2
LRRC28-205ENST00000558248 SUPT4H1P63272 117 aaKnown RBP2.56□□□□□ -2
LRRC28-205ENST00000558248 KLRD1Q13241 179 aa2.56□□□□□ -2
LRRC28-205ENST00000558248 CDK5R1Q15078 307 aa2.56□□□□□ -2
LRRC28-205ENST00000558248 FAM229BQ4G0N7 80 aa2.56□□□□□ -2
LRRC28-205ENST00000558248 COL5A1-AS1Q5SY13 56 aa2.56□□□□□ -2
LRRC28-205ENST00000558248 LCE3EQ5T5B0 92 aa2.56□□□□□ -2
LRRC28-205ENST00000558248 LYZL1Q6UWQ5 148 aa2.56□□□□□ -2
LRRC28-205ENST00000558248 SOSTDC1Q6X4U4 206 aa2.56□□□□□ -2
LRRC28-205ENST00000558248 C2orf91Q6ZV80 131 aa2.56□□□□□ -2
LRRC28-205ENST00000558248 C10orf111Q8N326 155 aa2.56□□□□□ -2
LRRC28-205ENST00000558248 Q8NDZ9 215 aa2.56□□□□□ -2
LRRC28-205ENST00000558248 UBALD1Q8TB05 177 aa2.56□□□□□ -2
LRRC28-205ENST00000558248 LINC00467Q9BRT7 94 aa2.56□□□□□ -2
LRRC28-205ENST00000558248 SLC35B3Q9H1N7 401 aa2.56□□□□□ -2
LRRC28-205ENST00000558248 TMEM106BQ9NUM4 274 aa2.56□□□□□ -2
LRRC28-205ENST00000558248 TAS2R8Q9NYW2 309 aa2.56□□□□□ -2
LRRC28-205ENST00000558248 ZNF443Q9Y2A4 671 aaPredicted RBP2.56□□□□□ -2
LRRC28-205ENST00000558248 TRAV7A0A075B6U4 112 aa2.55□□□□□ -2
LRRC28-205ENST00000558248 FNDC10F2Z333 226 aa2.55□□□□□ -2
LRRC28-205ENST00000558248 WISP3O95389 354 aaPredicted RBP2.55□□□□□ -2
LRRC28-205ENST00000558248 LY6G6CO95867 125 aa2.55□□□□□ -2
LRRC28-205ENST00000558248 PATE2Q6UY27 113 aa2.55□□□□□ -2
LRRC28-205ENST00000558248 SNX29P2Q8IUI4 249 aa2.55□□□□□ -2
LRRC28-205ENST00000558248 CHCHD1Q96BP2 118 aaKnown RBP2.55□□□□□ -2
LRRC28-205ENST00000558248 NAA60Q9H7X0 242 aa2.55□□□□□ -2
LRRC28-205ENST00000558248 BCL2L10Q9HD36 194 aa2.55□□□□□ -2
LRRC28-205ENST00000558248 RPRMQ9NS64 109 aa2.55□□□□□ -2
LRRC28-205ENST00000558248 ABCA13Q86UQ4 5058 aa2.54□□□□□ -2
LRRC28-205ENST00000558248 FRAS1Q86XX4 4008 aa2.54□□□□□ -2
LRRC28-205ENST00000558248 TANC2Q9HCD6 1990 aa2.54□□□□□ -2
LRRC28-205ENST00000558248 TRBV10-2A0A0K0K1G8 114 aa2.54□□□□□ -2
LRRC28-205ENST00000558248 CCDC179H3BU77 68 aa2.54□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms