RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 RHODO00212 210 aa9.1□□□□□ -0.95
LDLR-205ENST00000557933 TMEM223A0PJW6 202 aa9.09□□□□□ -0.95
LDLR-205ENST00000557933 RBMY1A1P0DJD3 496 aaKnown RBP9.09□□□□□ -0.95
LDLR-205ENST00000557933 RBMY1CP0DJD4 496 aa9.09□□□□□ -0.95
LDLR-205ENST00000557933 IGHV3-30-3P0DP02 117 aa9.09□□□□□ -0.95
LDLR-205ENST00000557933 RBMY1FQ15415 496 aaKnown RBP9.09□□□□□ -0.95
LDLR-205ENST00000557933 TMEM263Q8WUH6 116 aaKnown RBP9.09□□□□□ -0.95
LDLR-205ENST00000557933 IGLV4-3A0A075B6K6 122 aa9.09□□□□□ -0.95
LDLR-205ENST00000557933 IGHV4-30-2A0A087WSY4 118 aa9.09□□□□□ -0.95
LDLR-205ENST00000557933 IGHV4-59P01825 116 aa9.09□□□□□ -0.95
LDLR-205ENST00000557933 C19orf54Q5BKX5 351 aa9.09□□□□□ -0.95
LDLR-205ENST00000557933 IGHV4OR15-8A0A075B7B6 117 aa9.08□□□□□ -0.96
LDLR-205ENST00000557933 A0A087WW49 117 aa9.08□□□□□ -0.96
LDLR-205ENST00000557933 A0A0J9YXY3 114 aa9.08□□□□□ -0.96
LDLR-205ENST00000557933 TRBV27A0A0K0K1C4 114 aa9.08□□□□□ -0.96
LDLR-205ENST00000557933 LINC01619G3V211 115 aa9.08□□□□□ -0.96
LDLR-205ENST00000557933 TEX29Q8N6K0 151 aa9.08□□□□□ -0.96
LDLR-205ENST00000557933 Q6ZSN1 163 aa9.08□□□□□ -0.96
LDLR-205ENST00000557933 TIMM17AQ99595 171 aa9.08□□□□□ -0.96
LDLR-205ENST00000557933 ZFAND6Q6FIF0 208 aa9.08□□□□□ -0.96
LDLR-205ENST00000557933 C18orf65Q6ZTR6 163 aa9.08□□□□□ -0.96
LDLR-205ENST00000557933 UBR5O95071 2799 aaPredicted RBP9.07□□□□□ -0.96
LDLR-205ENST00000557933 IGHV3OR16-12A0A075B7B8 117 aa9.07□□□□□ -0.96
LDLR-205ENST00000557933 NDUFA7O95182 113 aa9.07□□□□□ -0.96
LDLR-205ENST00000557933 C20orf203Q8NBC4 194 aa9.07□□□□□ -0.96
LDLR-205ENST00000557933 CCDC179H3BU77 68 aa9.07□□□□□ -0.96
LDLR-205ENST00000557933 ATP6V0E2Q8NHE4 81 aa9.07□□□□□ -0.96
LDLR-205ENST00000557933 TMEM141Q96I45 108 aa9.07□□□□□ -0.96
LDLR-205ENST00000557933 TIMM21Q9BVV7 248 aa9.07□□□□□ -0.96
LDLR-205ENST00000557933 PPP1R17O96001 155 aa9.06□□□□□ -0.96
LDLR-205ENST00000557933 IGHG2P01859 326 aa9.06□□□□□ -0.96
LDLR-205ENST00000557933 LINC01620Q4KN68 170 aa9.06□□□□□ -0.96
LDLR-205ENST00000557933 LYRM7Q5U5X0 104 aa9.06□□□□□ -0.96
LDLR-205ENST00000557933 IGHV1OR15-1A0A075B7D0 117 aa9.06□□□□□ -0.96
LDLR-205ENST00000557933 SNCGO76070 127 aa9.05□□□□□ -0.96
LDLR-205ENST00000557933 ID1P41134 155 aa9.05□□□□□ -0.96
LDLR-205ENST00000557933 PAPPA-AS1Q5QFB9 102 aa9.05□□□□□ -0.96
LDLR-205ENST00000557933 LEPROTO15243 131 aa9.05□□□□□ -0.96
LDLR-205ENST00000557933 PLA2G2AP14555 144 aa9.05□□□□□ -0.96
LDLR-205ENST00000557933 A0A0J9YX75 114 aa9.04□□□□□ -0.96
LDLR-205ENST00000557933 LGALS9O00182 355 aa9.04□□□□□ -0.96
LDLR-205ENST00000557933 NXPH4O95158 308 aa9.04□□□□□ -0.96
LDLR-205ENST00000557933 NHLRC4P0CG21 123 aaPredicted RBP9.04□□□□□ -0.96
LDLR-205ENST00000557933 ATP5J2P56134 94 aa9.04□□□□□ -0.96
LDLR-205ENST00000557933 KHDC1LQ5JSQ8 128 aa9.04□□□□□ -0.96
LDLR-205ENST00000557933 NDUFA12Q9UI09 145 aa9.04□□□□□ -0.96
LDLR-205ENST00000557933 I3L3M4 83 aa9.04□□□□□ -0.96
LDLR-205ENST00000557933 GAGE2BQ13066 116 aa9.04□□□□□ -0.96
LDLR-205ENST00000557933 GAGE2EQ4V326 116 aa9.04□□□□□ -0.96
LDLR-205ENST00000557933 C2orf82Q6UX34 121 aa9.04□□□□□ -0.96
LDLR-205ENST00000557933 GAGE2DQ9UEU5 116 aa9.04□□□□□ -0.96
LDLR-205ENST00000557933 C11orf44Q8N8P7 122 aa9.04□□□□□ -0.96
LDLR-205ENST00000557933 C15orf53Q8NAA6 179 aa9.04□□□□□ -0.96
LDLR-205ENST00000557933 FAM104AQ969W3 186 aa9.04□□□□□ -0.96
LDLR-205ENST00000557933 CFHR3Q02985 330 aa9.03□□□□□ -0.96
LDLR-205ENST00000557933 APRG1Q8IVJ8 170 aa9.03□□□□□ -0.96
LDLR-205ENST00000557933 USMG5Q96IX5 58 aa9.03□□□□□ -0.96
LDLR-205ENST00000557933 C9orf85Q96MD7 179 aa9.03□□□□□ -0.96
LDLR-205ENST00000557933 DEFB131AP59861 70 aa9.03□□□□□ -0.96
LDLR-205ENST00000557933 SNRPD3P62318 126 aaKnown RBP9.03□□□□□ -0.96
LDLR-205ENST00000557933 HIVEP2P31629 2446 aa9.03□□□□□ -0.96
LDLR-205ENST00000557933 A6NDX4 124 aa9.02□□□□□ -0.96
LDLR-205ENST00000557933 IGHV3-53P01767 116 aa9.02□□□□□ -0.96
LDLR-205ENST00000557933 POM121L12Q8N7R1 296 aa9.02□□□□□ -0.96
LDLR-205ENST00000557933 APCP25054 2843 aa9.02□□□□□ -0.97
LDLR-205ENST00000557933 J3QKU1 62 aa9.02□□□□□ -0.97
LDLR-205ENST00000557933 MED14OSP0DP75 135 aa9.02□□□□□ -0.97
LDLR-205ENST00000557933 DSCR9P59020 149 aa9.02□□□□□ -0.97
LDLR-205ENST00000557933 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.02□□□□□ -0.97
LDLR-205ENST00000557933 TRAV8-4A0A0B4J246 113 aa9.01□□□□□ -0.97
LDLR-205ENST00000557933 DEFB112Q30KQ8 113 aa9.01□□□□□ -0.97
LDLR-205ENST00000557933 SVIPQ8NHG7 77 aa9.01□□□□□ -0.97
LDLR-205ENST00000557933 LINC00467Q9BRT7 94 aa9.01□□□□□ -0.97
LDLR-205ENST00000557933 CDKN2A-AS1Q9UH64 79 aa9.01□□□□□ -0.97
LDLR-205ENST00000557933 TNFRSF18Q9Y5U5 241 aa9.01□□□□□ -0.97
LDLR-205ENST00000557933 SLURP1P55000 103 aa9.01□□□□□ -0.97
LDLR-205ENST00000557933 ATXN8Q156A1 80 aa9.01□□□□□ -0.97
LDLR-205ENST00000557933 ODF3Q96PU9 254 aa9.01□□□□□ -0.97
LDLR-205ENST00000557933 CCL19Q99731 98 aa9.01□□□□□ -0.97
LDLR-205ENST00000557933 LITAFQ99732 161 aa9.01□□□□□ -0.97
LDLR-205ENST00000557933 ICOSQ9Y6W8 199 aa9.01□□□□□ -0.97
LDLR-205ENST00000557933 IGKV3OR2-268A0A0C4DH90 116 aa9.01□□□□□ -0.97
LDLR-205ENST00000557933 H7C423 109 aa9.01□□□□□ -0.97
LDLR-205ENST00000557933 M0R2P5 195 aa9.01□□□□□ -0.97
LDLR-205ENST00000557933 RPL13AP40429 203 aaKnown RBP9.01□□□□□ -0.97
LDLR-205ENST00000557933 KLK9Q2XQG4 91 aa9.01□□□□□ -0.97
LDLR-205ENST00000557933 SBSPONQ8IVN8 264 aa9.01□□□□□ -0.97
LDLR-205ENST00000557933 RS1O15537 224 aa9□□□□□ -0.97
LDLR-205ENST00000557933 IGLV1-40P01703 118 aa9□□□□□ -0.97
LDLR-205ENST00000557933 LRRC75A-AS1Q8N1F1 130 aa9□□□□□ -0.97
LDLR-205ENST00000557933 NOTCH2Q04721 2471 aa9□□□□□ -0.97
LDLR-205ENST00000557933 H3BMM0 161 aa9□□□□□ -0.97
LDLR-205ENST00000557933 NSUN5P1Q3KNT7 163 aa9□□□□□ -0.97
LDLR-205ENST00000557933 UBE2WQ96B02 151 aa9□□□□□ -0.97
LDLR-205ENST00000557933 NDUFV3P56181 108 aaKnown RBP8.99□□□□□ -0.97
LDLR-205ENST00000557933 CITED1Q99966 193 aa8.99□□□□□ -0.97
LDLR-205ENST00000557933 PIMREGQ9BSJ6 248 aa8.99□□□□□ -0.97
LDLR-205ENST00000557933 TRAV13-1A0A0B4J241 112 aa8.99□□□□□ -0.97
LDLR-205ENST00000557933 HOXD3P31249 432 aaPredicted RBP8.99□□□□□ -0.97
LDLR-205ENST00000557933 FLNAP21333 2647 aaKnown RBP8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms