RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-231	ENST00000557433	DEFB121	Q5J5C9	76 aa		11.88	□□□□□ -0.51
SHMT2-231	ENST00000557433	LST1	O00453	97 aa		11.87	□□□□□ -0.51
SHMT2-231	ENST00000557433	AVP	P01185	164 aa		11.87	□□□□□ -0.51
SHMT2-231	ENST00000557433	IGHV4-59	P01825	116 aa		11.87	□□□□□ -0.51
SHMT2-231	ENST00000557433	HOXD3	P31249	432 aa	Predicted RBP	11.87	□□□□□ -0.51
SHMT2-231	ENST00000557433	LY6D	Q14210	128 aa		11.87	□□□□□ -0.51
SHMT2-231	ENST00000557433	DEFB112	Q30KQ8	113 aa		11.87	□□□□□ -0.51
SHMT2-231	ENST00000557433	ADAMTSL4-AS1	Q5T5F5	129 aa		11.87	□□□□□ -0.51
SHMT2-231	ENST00000557433	BEX4	Q9NWD9	120 aa	Predicted RBP	11.87	□□□□□ -0.51
SHMT2-231	ENST00000557433	CSMD1	Q96PZ7	3565 aa		11.87	□□□□□ -0.51
SHMT2-231	ENST00000557433	HIVEP3	Q5T1R4	2406 aa		11.86	□□□□□ -0.51
SHMT2-231	ENST00000557433		H7C423	109 aa		11.86	□□□□□ -0.51
SHMT2-231	ENST00000557433	NDUFA1	O15239	70 aa		11.86	□□□□□ -0.51
SHMT2-231	ENST00000557433	RBMY1A1	P0DJD3	496 aa	Known RBP	11.86	□□□□□ -0.51
SHMT2-231	ENST00000557433	RBMY1C	P0DJD4	496 aa		11.86	□□□□□ -0.51
SHMT2-231	ENST00000557433	CIRBP	Q14011	172 aa	Known RBP	11.86	□□□□□ -0.51
SHMT2-231	ENST00000557433	RBMY1F	Q15415	496 aa	Known RBP	11.86	□□□□□ -0.51
SHMT2-231	ENST00000557433	DUX3	Q96PT4	197 aa		11.86	□□□□□ -0.51
SHMT2-231	ENST00000557433	PRORY	Q9H606	182 aa		11.86	□□□□□ -0.51
SHMT2-231	ENST00000557433	NBAS	A2RRP1	2371 aa		11.86	□□□□□ -0.51
SHMT2-231	ENST00000557433	TEX49	A0A1B0GTD5	131 aa		11.86	□□□□□ -0.51
SHMT2-231	ENST00000557433	ADARB2-AS1	A8MUL3	147 aa		11.86	□□□□□ -0.51
SHMT2-231	ENST00000557433	IGHV3-53	P01767	116 aa		11.86	□□□□□ -0.51
SHMT2-231	ENST00000557433	SVIP	Q8NHG7	77 aa		11.86	□□□□□ -0.51
SHMT2-231	ENST00000557433	NDUFV3	P56181	108 aa	Known RBP	11.85	□□□□□ -0.51
SHMT2-231	ENST00000557433	TTC32	Q5I0X7	151 aa		11.85	□□□□□ -0.51
SHMT2-231	ENST00000557433	DUX5	Q96PT3	197 aa		11.85	□□□□□ -0.51
SHMT2-231	ENST00000557433	COL6A6	A6NMZ7	2263 aa		11.85	□□□□□ -0.51
SHMT2-231	ENST00000557433	BEAN1	Q3B7T3	259 aa		11.84	□□□□□ -0.51
SHMT2-231	ENST00000557433	LINC01356	Q8N9X3	169 aa		11.84	□□□□□ -0.51
SHMT2-231	ENST00000557433	IGHV3-73	A0A0B4J1V6	119 aa		11.84	□□□□□ -0.51
SHMT2-231	ENST00000557433	C10orf99	Q6UWK7	81 aa		11.84	□□□□□ -0.51
SHMT2-231	ENST00000557433	DEFB131A	P59861	70 aa		11.83	□□□□□ -0.52
SHMT2-231	ENST00000557433	CEMP1	Q6PRD7	247 aa	Predicted RBP	11.83	□□□□□ -0.52
SHMT2-231	ENST00000557433	PPDPF	Q9H3Y8	114 aa		11.83	□□□□□ -0.52
SHMT2-231	ENST00000557433	VPREB3	Q9UKI3	123 aa		11.83	□□□□□ -0.52
SHMT2-231	ENST00000557433	TRAV4	A0A0B4J268	109 aa		11.82	□□□□□ -0.52
SHMT2-231	ENST00000557433	KNCN	A6PVL3	124 aa		11.82	□□□□□ -0.52
SHMT2-231	ENST00000557433	PROK1	P58294	105 aa		11.82	□□□□□ -0.52
SHMT2-231	ENST00000557433	C15orf53	Q8NAA6	179 aa		11.82	□□□□□ -0.52
SHMT2-231	ENST00000557433	RS1	O15537	224 aa		11.82	□□□□□ -0.52
SHMT2-231	ENST00000557433	HERVK_113	P63121	156 aa		11.82	□□□□□ -0.52
SHMT2-231	ENST00000557433	FAM19A3	Q7Z5A8	133 aa		11.82	□□□□□ -0.52
SHMT2-231	ENST00000557433	NHLRC4	P0CG21	123 aa	Predicted RBP	11.81	□□□□□ -0.52
SHMT2-231	ENST00000557433	PEMT	Q9UBM1	199 aa		11.81	□□□□□ -0.52
SHMT2-231	ENST00000557433	PRRC2A	P48634	2157 aa	Known RBP	11.8	□□□□□ -0.52
SHMT2-231	ENST00000557433	IGKV2D-29	A0A075B6S2	120 aa	Predicted RBP	11.8	□□□□□ -0.52
SHMT2-231	ENST00000557433	IGKV2-29	A2NJV5	120 aa	Predicted RBP	11.8	□□□□□ -0.52
SHMT2-231	ENST00000557433	ACYP1	P07311	99 aa		11.8	□□□□□ -0.52
SHMT2-231	ENST00000557433	HTN1	P15515	57 aa		11.8	□□□□□ -0.52
SHMT2-231	ENST00000557433	IGLV5-39	A0A0G2JS06	123 aa		11.8	□□□□□ -0.52
SHMT2-231	ENST00000557433	RNASE13	Q5GAN3	156 aa	Known RBP	11.8	□□□□□ -0.52
SHMT2-231	ENST00000557433	C11orf72	Q8NBR9	251 aa		11.8	□□□□□ -0.52
SHMT2-231	ENST00000557433	GAGE12J	A6NER3	117 aa		11.79	□□□□□ -0.52
SHMT2-231	ENST00000557433	CRLF1	O75462	422 aa		11.79	□□□□□ -0.52
SHMT2-231	ENST00000557433	GAGE7	O76087	117 aa		11.79	□□□□□ -0.52
SHMT2-231	ENST00000557433	GAGE12F	P0CL80	117 aa		11.79	□□□□□ -0.52
SHMT2-231	ENST00000557433	GAGE12G	P0CL81	117 aa		11.79	□□□□□ -0.52
SHMT2-231	ENST00000557433	GAGE12I	P0CL82	117 aa		11.79	□□□□□ -0.52
SHMT2-231	ENST00000557433	GAGE4	Q13068	117 aa		11.79	□□□□□ -0.52
SHMT2-231	ENST00000557433	DGAT2L7P	Q6IED9	249 aa		11.79	□□□□□ -0.52
SHMT2-231	ENST00000557433		Q6ZSN1	163 aa		11.79	□□□□□ -0.52
SHMT2-231	ENST00000557433	TMEM101	Q96IK0	257 aa		11.79	□□□□□ -0.52
SHMT2-231	ENST00000557433	ZNF702P	Q9H963	129 aa		11.79	□□□□□ -0.52
SHMT2-231	ENST00000557433	CDKN2A-AS1	Q9UH64	79 aa		11.79	□□□□□ -0.52
SHMT2-231	ENST00000557433	RBMY1B	A6NDE4	496 aa	Known RBP	11.78	□□□□□ -0.52
SHMT2-231	ENST00000557433	RBMY1E	A6NEQ0	496 aa	Known RBP	11.78	□□□□□ -0.52
SHMT2-231	ENST00000557433	INS	P01308	110 aa		11.78	□□□□□ -0.52
SHMT2-231	ENST00000557433	RBMY1D	P0C7P1	496 aa	Known RBP	11.78	□□□□□ -0.52
SHMT2-231	ENST00000557433	CSDC2	Q9Y534	153 aa	Known RBP	11.78	□□□□□ -0.52
SHMT2-231	ENST00000557433	CACNA1A	O00555	2505 aa		11.78	□□□□□ -0.52
SHMT2-231	ENST00000557433	ATRX	P46100	2492 aa		11.78	□□□□□ -0.52
SHMT2-231	ENST00000557433	SPTAN1	Q13813	2472 aa	Known RBP	11.77	□□□□□ -0.53
SHMT2-231	ENST00000557433		Q6YL49	198 aa		11.77	□□□□□ -0.53
SHMT2-231	ENST00000557433	LINC00308	Q8TCZ7	52 aa		11.77	□□□□□ -0.53
SHMT2-231	ENST00000557433	CLEC2B	Q92478	149 aa		11.77	□□□□□ -0.53
SHMT2-231	ENST00000557433	LINC01587	Q99440	93 aa		11.77	□□□□□ -0.53
SHMT2-231	ENST00000557433	DOPEY2	Q9Y3R5	2298 aa		11.77	□□□□□ -0.53
SHMT2-231	ENST00000557433	IGF2R	P11717	2491 aa		11.76	□□□□□ -0.53
SHMT2-231	ENST00000557433		A8MZ25	164 aa		11.76	□□□□□ -0.53
SHMT2-231	ENST00000557433	COX7A2L	O14548	114 aa		11.76	□□□□□ -0.53
SHMT2-231	ENST00000557433	TRBV7-7	A0A0K0K1E9	115 aa		11.75	□□□□□ -0.53
SHMT2-231	ENST00000557433	HERV-K104	P63124	156 aa		11.75	□□□□□ -0.53
SHMT2-231	ENST00000557433	CITED2	Q99967	270 aa	Predicted RBP	11.75	□□□□□ -0.53
SHMT2-231	ENST00000557433	MAP6D1	Q9H9H5	199 aa		11.75	□□□□□ -0.53
SHMT2-231	ENST00000557433	AKAP6	Q13023	2319 aa		11.75	□□□□□ -0.53
SHMT2-231	ENST00000557433	NCOR2	Q9Y618	2525 aa		11.75	□□□□□ -0.53
SHMT2-231	ENST00000557433	TRBV10-1	A0A0K0K1A3	114 aa		11.74	□□□□□ -0.53
SHMT2-231	ENST00000557433	FSHB	P01225	129 aa		11.74	□□□□□ -0.53
SHMT2-231	ENST00000557433	NPC2	P61916	151 aa		11.74	□□□□□ -0.53
SHMT2-231	ENST00000557433	IMUP	Q9GZP8	106 aa		11.74	□□□□□ -0.53
SHMT2-231	ENST00000557433		Q9H8V8	135 aa		11.74	□□□□□ -0.53
SHMT2-231	ENST00000557433	IGHV3OR16-12	A0A075B7B8	117 aa		11.73	□□□□□ -0.53
SHMT2-231	ENST00000557433	SLURP1	P55000	103 aa		11.73	□□□□□ -0.53
SHMT2-231	ENST00000557433	LINC00242	Q5T6M2	205 aa		11.73	□□□□□ -0.53
SHMT2-231	ENST00000557433	SHISA2	Q6UWI4	295 aa		11.73	□□□□□ -0.53
SHMT2-231	ENST00000557433		Q8N2B8	174 aa		11.73	□□□□□ -0.53
SHMT2-231	ENST00000557433		Q9UF83	564 aa		11.73	□□□□□ -0.53
SHMT2-231	ENST00000557433	TRAC	P01848	142 aa		11.72	□□□□□ -0.53
SHMT2-231	ENST00000557433		Q6ZSV7	163 aa		11.72	□□□□□ -0.53

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