RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 SPG11Q96JI7 2443 aa9.8□□□□□ -0.84
SHMT2-222ENST00000555774 KHDC1LQ5JSQ8 128 aa9.79□□□□□ -0.84
SHMT2-222ENST00000555774 Q6ZSN1 163 aa9.79□□□□□ -0.84
SHMT2-222ENST00000555774 ERG28Q9UKR5 140 aa9.79□□□□□ -0.84
SHMT2-222ENST00000555774 SCGB1C2P0DMR2 95 aa9.79□□□□□ -0.84
SHMT2-222ENST00000555774 AZU1P20160 251 aa9.79□□□□□ -0.84
SHMT2-222ENST00000555774 SFTA2Q6UW10 78 aa9.79□□□□□ -0.84
SHMT2-222ENST00000555774 TEN1Q86WV5 123 aa9.79□□□□□ -0.84
SHMT2-222ENST00000555774 SPANXDQ9BXN6 97 aa9.79□□□□□ -0.84
SHMT2-222ENST00000555774 SPANXCQ9NY87 97 aa9.79□□□□□ -0.84
SHMT2-222ENST00000555774 CSPG4Q6UVK1 2322 aa9.79□□□□□ -0.84
SHMT2-222ENST00000555774 USP9XQ93008 2570 aaPredicted RBP9.79□□□□□ -0.84
SHMT2-222ENST00000555774 PRRC2AP48634 2157 aaKnown RBP9.79□□□□□ -0.84
SHMT2-222ENST00000555774 KRTAP10-9P60411 292 aa9.78□□□□□ -0.84
SHMT2-222ENST00000555774 PPDPFLQ8WWR9 84 aa9.78□□□□□ -0.84
SHMT2-222ENST00000555774 Q96MF0 132 aa9.78□□□□□ -0.84
SHMT2-222ENST00000555774 PIEZO1Q92508 2521 aa9.78□□□□□ -0.84
SHMT2-222ENST00000555774 ZNF418Q8TF45 676 aaPredicted RBP9.78□□□□□ -0.84
SHMT2-222ENST00000555774 VSIG2Q96IQ7 327 aa9.78□□□□□ -0.84
SHMT2-222ENST00000555774 LITAFQ99732 161 aa9.78□□□□□ -0.84
SHMT2-222ENST00000555774 GTSF1LQ9H1H1 148 aa9.78□□□□□ -0.84
SHMT2-222ENST00000555774 COL12A1Q99715 3063 aa9.78□□□□□ -0.84
SHMT2-222ENST00000555774 CR1P17927 2039 aa9.77□□□□□ -0.84
SHMT2-222ENST00000555774 DOPEY2Q9Y3R5 2298 aa9.77□□□□□ -0.84
SHMT2-222ENST00000555774 PRB1P04280 392 aa9.77□□□□□ -0.85
SHMT2-222ENST00000555774 INSL3P51460 131 aa9.77□□□□□ -0.85
SHMT2-222ENST00000555774 EIF4EBP3O60516 100 aaPredicted RBP9.77□□□□□ -0.85
SHMT2-222ENST00000555774 CEMP1Q6PRD7 247 aaPredicted RBP9.77□□□□□ -0.85
SHMT2-222ENST00000555774 RNF183Q96D59 192 aa9.77□□□□□ -0.85
SHMT2-222ENST00000555774 NDUFA12Q9UI09 145 aa9.77□□□□□ -0.85
SHMT2-222ENST00000555774 TIMM17BO60830 172 aa9.76□□□□□ -0.85
SHMT2-222ENST00000555774 PRM2P04554 102 aa9.76□□□□□ -0.85
SHMT2-222ENST00000555774 TIRAPP58753 221 aa9.76□□□□□ -0.85
SHMT2-222ENST00000555774 IL17DQ8TAD2 202 aa9.76□□□□□ -0.85
SHMT2-222ENST00000555774 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.76□□□□□ -0.85
SHMT2-222ENST00000555774 IGKV2-29A2NJV5 120 aaPredicted RBP9.76□□□□□ -0.85
SHMT2-222ENST00000555774 Q6ZSV7 163 aa9.76□□□□□ -0.85
SHMT2-222ENST00000555774 Q6ZUT4 128 aa9.76□□□□□ -0.85
SHMT2-222ENST00000555774 IGSF10Q6WRI0 2623 aa9.75□□□□□ -0.85
SHMT2-222ENST00000555774 IGLV5-45A0A087WSX0 123 aa9.75□□□□□ -0.85
SHMT2-222ENST00000555774 FHL3Q13643 280 aa9.75□□□□□ -0.85
SHMT2-222ENST00000555774 ODF3L2Q3SX64 289 aa9.75□□□□□ -0.85
SHMT2-222ENST00000555774 ZFAND6Q6FIF0 208 aa9.75□□□□□ -0.85
SHMT2-222ENST00000555774 ZNF843Q8N446 348 aa9.75□□□□□ -0.85
SHMT2-222ENST00000555774 GEMIN7Q9H840 131 aaKnown RBP9.75□□□□□ -0.85
SHMT2-222ENST00000555774 YAE1D1Q9NRH1 226 aa9.75□□□□□ -0.85
SHMT2-222ENST00000555774 TRAV8-3A0A0A6YYJ7 113 aa9.74□□□□□ -0.85
SHMT2-222ENST00000555774 MIAQ16674 131 aa9.74□□□□□ -0.85
SHMT2-222ENST00000555774 KRTAP1-3Q8IUG1 177 aa9.74□□□□□ -0.85
SHMT2-222ENST00000555774 STHQ8IWL8 128 aa9.74□□□□□ -0.85
SHMT2-222ENST00000555774 Q9UF83 564 aa9.74□□□□□ -0.85
SHMT2-222ENST00000555774 TRBV30A0A0K0K1B3 111 aa9.74□□□□□ -0.85
SHMT2-222ENST00000555774 BBC3Q96PG8 261 aaPredicted RBP9.74□□□□□ -0.85
SHMT2-222ENST00000555774 SMAGPQ0VAQ4 97 aa9.73□□□□□ -0.85
SHMT2-222ENST00000555774 ATXN8Q156A1 80 aa9.73□□□□□ -0.85
SHMT2-222ENST00000555774 RNASE13Q5GAN3 156 aaKnown RBP9.73□□□□□ -0.85
SHMT2-222ENST00000555774 LINC01600Q96MT4 127 aa9.73□□□□□ -0.85
SHMT2-222ENST00000555774 TRBV10-1A0A0K0K1A3 114 aa9.73□□□□□ -0.85
SHMT2-222ENST00000555774 IFITM1P13164 125 aa9.73□□□□□ -0.85
SHMT2-222ENST00000555774 Q1RN00 199 aa9.73□□□□□ -0.85
SHMT2-222ENST00000555774 CARD19Q96LW7 228 aa9.73□□□□□ -0.85
SHMT2-222ENST00000555774 FLNCQ14315 2725 aa9.72□□□□□ -0.85
SHMT2-222ENST00000555774 SLC25A20O43772 301 aa9.72□□□□□ -0.85
SHMT2-222ENST00000555774 SPINK8P0C7L1 97 aa9.72□□□□□ -0.85
SHMT2-222ENST00000555774 CMC4P56277 68 aaPredicted RBP9.72□□□□□ -0.85
SHMT2-222ENST00000555774 FAM19A3Q7Z5A8 133 aa9.72□□□□□ -0.85
SHMT2-222ENST00000555774 C1orf158Q8N1D5 194 aa9.72□□□□□ -0.85
SHMT2-222ENST00000555774 XCL2Q9UBD3 114 aa9.72□□□□□ -0.85
SHMT2-222ENST00000555774 IGHV3-38A0A0C4DH36 116 aa9.72□□□□□ -0.85
SHMT2-222ENST00000555774 ADARB2-AS1A8MUL3 147 aa9.72□□□□□ -0.85
SHMT2-222ENST00000555774 ANKRD17O75179 2603 aaKnown RBP9.71□□□□□ -0.85
SHMT2-222ENST00000555774 DNAJC9-AS1A6NH13 148 aa9.71□□□□□ -0.85
SHMT2-222ENST00000555774 NDUFA1O15239 70 aa9.71□□□□□ -0.85
SHMT2-222ENST00000555774 HERVK_113P63121 156 aa9.71□□□□□ -0.85
SHMT2-222ENST00000555774 DGAT2L7PQ6IED9 249 aa9.71□□□□□ -0.85
SHMT2-222ENST00000555774 ANKRD29Q8N6D5 301 aa9.71□□□□□ -0.85
SHMT2-222ENST00000555774 CDIP1Q9H305 208 aa9.71□□□□□ -0.85
SHMT2-222ENST00000555774 CSDC2Q9Y534 153 aaKnown RBP9.71□□□□□ -0.85
SHMT2-222ENST00000555774 NACAE9PAV3 2078 aa9.7□□□□□ -0.86
SHMT2-222ENST00000555774 CELSR2Q9HCU4 2923 aa9.7□□□□□ -0.86
SHMT2-222ENST00000555774 PRSS2P07478 247 aa9.7□□□□□ -0.86
SHMT2-222ENST00000555774 RPL36AP83881 106 aaKnown RBP9.7□□□□□ -0.86
SHMT2-222ENST00000555774 DAZ2Q13117 558 aaKnown RBP9.7□□□□□ -0.86
SHMT2-222ENST00000555774 ADAMTSL4-AS1Q5T5F5 129 aa9.7□□□□□ -0.86
SHMT2-222ENST00000555774 DAZ4Q86SG3 579 aaKnown RBP9.7□□□□□ -0.86
SHMT2-222ENST00000555774 RPL36ALQ969Q0 106 aaKnown RBP9.7□□□□□ -0.86
SHMT2-222ENST00000555774 DAZ3Q9NR90 486 aaKnown RBP9.7□□□□□ -0.86
SHMT2-222ENST00000555774 TRGV1A0A0A0MS02 117 aa9.7□□□□□ -0.86
SHMT2-222ENST00000555774 TRAV4A0A0B4J268 109 aa9.7□□□□□ -0.86
SHMT2-222ENST00000555774 C9JAW5 83 aa9.7□□□□□ -0.86
SHMT2-222ENST00000555774 H7C2G1 150 aa9.7□□□□□ -0.86
SHMT2-222ENST00000555774 K7EQD1 137 aa9.7□□□□□ -0.86
SHMT2-222ENST00000555774 CCL24O00175 119 aa9.7□□□□□ -0.86
SHMT2-222ENST00000555774 LINC01620Q4KN68 170 aa9.69□□□□□ -0.86
SHMT2-222ENST00000555774 CDKN2A-AS1Q9UH64 79 aa9.69□□□□□ -0.86
SHMT2-222ENST00000555774 FBN2P35556 2912 aa9.69□□□□□ -0.86
SHMT2-222ENST00000555774 IGLV5-39A0A0G2JS06 123 aa9.68□□□□□ -0.86
SHMT2-222ENST00000555774 TMEM262E9PQX1 116 aa9.68□□□□□ -0.86
SHMT2-222ENST00000555774 IGHV3OR16-12A0A075B7B8 117 aa9.68□□□□□ -0.86
SHMT2-222ENST00000555774 TRIAP1O43715 76 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 102 ms