RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 LINC01620Q4KN68 170 aa2.28□□□□□ -2.04
LIMA1-206ENST00000550611 SPANXN5Q5MJ07 72 aa2.28□□□□□ -2.04
LIMA1-206ENST00000550611 PRR9Q5T870 116 aa2.28□□□□□ -2.04
LIMA1-206ENST00000550611 TMEM14EPQ6UXP3 125 aa2.28□□□□□ -2.04
LIMA1-206ENST00000550611 GTF2H5Q6ZYL4 71 aa2.28□□□□□ -2.04
LIMA1-206ENST00000550611 LINC00305Q7Z4B0 112 aa2.28□□□□□ -2.04
LIMA1-206ENST00000550611 NIT1Q86X76 327 aa2.28□□□□□ -2.04
LIMA1-206ENST00000550611 BPIFA4PQ86YQ2 179 aa2.28□□□□□ -2.04
LIMA1-206ENST00000550611 OR13C6PQ8NH95 151 aa2.28□□□□□ -2.04
LIMA1-206ENST00000550611 SMIM4Q8WVI0 70 aa2.28□□□□□ -2.04
LIMA1-206ENST00000550611 ISOC2Q96AB3 205 aa2.28□□□□□ -2.04
LIMA1-206ENST00000550611 SCGB3A2Q96PL1 93 aa2.28□□□□□ -2.04
LIMA1-206ENST00000550611 SDHCQ99643 169 aaPredicted RBP2.28□□□□□ -2.04
LIMA1-206ENST00000550611 SOSTQ9BQB4 213 aa2.28□□□□□ -2.04
LIMA1-206ENST00000550611 TXNDC17Q9BRA2 123 aa2.28□□□□□ -2.04
LIMA1-206ENST00000550611 MAP1LC3CQ9BXW4 147 aa2.28□□□□□ -2.04
LIMA1-206ENST00000550611 OCR1Q9BZK8 76 aa2.28□□□□□ -2.04
LIMA1-206ENST00000550611 NAA50Q9GZZ1 169 aaKnown RBP2.28□□□□□ -2.04
LIMA1-206ENST00000550611 ARL6Q9H0F7 186 aa2.28□□□□□ -2.04
LIMA1-206ENST00000550611 JPT2Q9H910 190 aa2.28□□□□□ -2.04
LIMA1-206ENST00000550611 NAT8Q9UHE5 227 aa2.28□□□□□ -2.04
LIMA1-206ENST00000550611 TRBV19A0A075B6N1 114 aa2.27□□□□□ -2.05
LIMA1-206ENST00000550611 TRGV4A0A0C4DH28 118 aa2.27□□□□□ -2.05
LIMA1-206ENST00000550611 INMT-MINDY4F8WBC2 141 aa2.27□□□□□ -2.05
LIMA1-206ENST00000550611 H3BP45 60 aa2.27□□□□□ -2.05
LIMA1-206ENST00000550611 M0R3E3 92 aa2.27□□□□□ -2.05
LIMA1-206ENST00000550611 AGPAT2O15120 278 aa2.27□□□□□ -2.05
LIMA1-206ENST00000550611 RS1O15537 224 aa2.27□□□□□ -2.05
LIMA1-206ENST00000550611 TYMSP04818 313 aa2.27□□□□□ -2.05
LIMA1-206ENST00000550611 GIPP09681 153 aaPredicted RBP2.27□□□□□ -2.05
LIMA1-206ENST00000550611 ESDP10768 282 aa2.27□□□□□ -2.05
LIMA1-206ENST00000550611 GATA1P15976 413 aaPredicted RBP2.27□□□□□ -2.05
LIMA1-206ENST00000550611 RNASE4P34096 147 aaKnown RBP2.27□□□□□ -2.05
LIMA1-206ENST00000550611 TAS2R30P59541 319 aa2.27□□□□□ -2.05
LIMA1-206ENST00000550611 S100A10P60903 97 aa2.27□□□□□ -2.05
LIMA1-206ENST00000550611 RPL32P62910 135 aaKnown RBP2.27□□□□□ -2.05
LIMA1-206ENST00000550611 AKR1C1Q04828 323 aa2.27□□□□□ -2.05
LIMA1-206ENST00000550611 LAGE3Q14657 143 aa2.27□□□□□ -2.05
LIMA1-206ENST00000550611 ACOT6Q3I5F7 207 aaPredicted RBP2.27□□□□□ -2.05
LIMA1-206ENST00000550611 REG3GQ6UW15 175 aa2.27□□□□□ -2.05
LIMA1-206ENST00000550611 FAM159AQ6UWV7 190 aa2.27□□□□□ -2.05
LIMA1-206ENST00000550611 Q6ZRU5 148 aa2.27□□□□□ -2.05
LIMA1-206ENST00000550611 FA2HQ7L5A8 372 aa2.27□□□□□ -2.05
LIMA1-206ENST00000550611 CBLN2Q8IUK8 224 aa2.27□□□□□ -2.05
LIMA1-206ENST00000550611 SMIM20Q8N5G0 67 aa2.27□□□□□ -2.05
LIMA1-206ENST00000550611 OR10P1Q8NGE3 313 aa2.27□□□□□ -2.05
LIMA1-206ENST00000550611 OR1L4Q8NGR5 311 aa2.27□□□□□ -2.05
LIMA1-206ENST00000550611 C11orf52Q96A22 123 aa2.27□□□□□ -2.05
LIMA1-206ENST00000550611 SMIM8Q96KF7 97 aa2.27□□□□□ -2.05
LIMA1-206ENST00000550611 MIEN1Q9BRT3 115 aa2.27□□□□□ -2.05
LIMA1-206ENST00000550611 PSMG3Q9BT73 122 aaPredicted RBP2.27□□□□□ -2.05
LIMA1-206ENST00000550611 PAXXQ9BUH6 204 aa2.27□□□□□ -2.05
LIMA1-206ENST00000550611 SEC11CQ9BY50 192 aa2.27□□□□□ -2.05
LIMA1-206ENST00000550611 SLIRPQ9GZT3 109 aaKnown RBP2.27□□□□□ -2.05
LIMA1-206ENST00000550611 Q9HAA7 133 aa2.27□□□□□ -2.05
LIMA1-206ENST00000550611 WFDC1Q9HC57 220 aa2.27□□□□□ -2.05
LIMA1-206ENST00000550611 SPANXB1Q9NS25 103 aaPredicted RBP2.27□□□□□ -2.05
LIMA1-206ENST00000550611 ZNF492Q9P255 531 aa2.27□□□□□ -2.05
LIMA1-206ENST00000550611 SS18L2Q9UHA2 77 aa2.27□□□□□ -2.05
LIMA1-206ENST00000550611 HSPB8Q9UJY1 196 aa2.27□□□□□ -2.05
LIMA1-206ENST00000550611 CARHSP1Q9Y2V2 147 aaKnown RBP2.27□□□□□ -2.05
LIMA1-206ENST00000550611 V9GYY9 64 aa2.27□□□□□ -2.05
LIMA1-206ENST00000550611 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.26□□□□□ -2.05
LIMA1-206ENST00000550611 TRAV4A0A0B4J268 109 aa2.26□□□□□ -2.05
LIMA1-206ENST00000550611 A0A0U1RQV1 116 aa2.26□□□□□ -2.05
LIMA1-206ENST00000550611 RPL37AP8A6NKH3 93 aa2.26□□□□□ -2.05
LIMA1-206ENST00000550611 C9JCJ5 164 aa2.26□□□□□ -2.05
LIMA1-206ENST00000550611 LECT2O14960 151 aa2.26□□□□□ -2.05
LIMA1-206ENST00000550611 SFT2D2O95562 160 aa2.26□□□□□ -2.05
LIMA1-206ENST00000550611 GPX1P07203 203 aa2.26□□□□□ -2.05
LIMA1-206ENST00000550611 PFN1P07737 140 aaKnown RBP2.26□□□□□ -2.05
LIMA1-206ENST00000550611 SMIM17P0DL12 118 aa2.26□□□□□ -2.05
LIMA1-206ENST00000550611 HIST1H1EP10412 219 aaKnown RBP2.26□□□□□ -2.05
LIMA1-206ENST00000550611 FAUP35544 74 aaKnown RBP2.26□□□□□ -2.05
LIMA1-206ENST00000550611 RPL29P47914 159 aaKnown RBP2.26□□□□□ -2.05
LIMA1-206ENST00000550611 RPL37AP61513 92 aaKnown RBP2.26□□□□□ -2.05
LIMA1-206ENST00000550611 SLC38A11Q08AI6 406 aa2.26□□□□□ -2.05
LIMA1-206ENST00000550611 ZNF266Q14584 549 aa2.26□□□□□ -2.05
LIMA1-206ENST00000550611 BATFQ16520 125 aa2.26□□□□□ -2.05
LIMA1-206ENST00000550611 IAH1Q2TAA2 248 aaPredicted RBP2.26□□□□□ -2.05
LIMA1-206ENST00000550611 LGALSLQ3ZCW2 172 aaPredicted RBP2.26□□□□□ -2.05
LIMA1-206ENST00000550611 C10orf91Q5T1B1 145 aa2.26□□□□□ -2.05
LIMA1-206ENST00000550611 ZNF664Q8N3J9 261 aa2.26□□□□□ -2.05
LIMA1-206ENST00000550611 BAALCQ8WXS3 180 aa2.26□□□□□ -2.05
LIMA1-206ENST00000550611 HIST1H2BAQ96A08 127 aa2.26□□□□□ -2.05
LIMA1-206ENST00000550611 MGST2Q99735 147 aa2.26□□□□□ -2.05
LIMA1-206ENST00000550611 MARVELD1Q9BSK0 173 aa2.26□□□□□ -2.05
LIMA1-206ENST00000550611 TMEM126AQ9H061 195 aa2.26□□□□□ -2.05
LIMA1-206ENST00000550611 SLC25A31Q9H0C2 315 aa2.26□□□□□ -2.05
LIMA1-206ENST00000550611 PRR34Q9NV39 138 aa2.26□□□□□ -2.05
LIMA1-206ENST00000550611 PSENENQ9NZ42 101 aa2.26□□□□□ -2.05
LIMA1-206ENST00000550611 TMEM14CQ9P0S9 112 aa2.26□□□□□ -2.05
LIMA1-206ENST00000550611 IGKV2-40A0A087WW87 121 aaPredicted RBP2.25□□□□□ -2.05
LIMA1-206ENST00000550611 TRAV8-3A0A0A6YYJ7 113 aa2.25□□□□□ -2.05
LIMA1-206ENST00000550611 BORCS7-ASMTA0A0B4J1R7 106 aa2.25□□□□□ -2.05
LIMA1-206ENST00000550611 TRAV8-6A0A0B4J262 113 aa2.25□□□□□ -2.05
LIMA1-206ENST00000550611 TRBV6-4A0A1B0GX49 114 aa2.25□□□□□ -2.05
LIMA1-206ENST00000550611 MAP1LC3B2A6NCE7 125 aa2.25□□□□□ -2.05
LIMA1-206ENST00000550611 RBFOX3A6NFN3 312 aa2.25□□□□□ -2.05
LIMA1-206ENST00000550611 COX7A2P2O60397 106 aa2.25□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms