RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 RBMY1DP0C7P1 496 aaKnown RBP11.23□□□□□ -0.61
CUX1-214ENST00000550008 RBMY1A1P0DJD3 496 aaKnown RBP11.23□□□□□ -0.61
CUX1-214ENST00000550008 RBMY1CP0DJD4 496 aa11.23□□□□□ -0.61
CUX1-214ENST00000550008 XCL1P47992 114 aa11.23□□□□□ -0.61
CUX1-214ENST00000550008 CFAP46Q8IYW2 2715 aa11.22□□□□□ -0.61
CUX1-214ENST00000550008 SIVA1O15304 175 aa11.22□□□□□ -0.61
CUX1-214ENST00000550008 TOMM6Q96B49 74 aa11.22□□□□□ -0.61
CUX1-214ENST00000550008 PRO1854Q9UHT4 67 aa11.22□□□□□ -0.61
CUX1-214ENST00000550008 SS18Q15532 418 aa11.22□□□□□ -0.61
CUX1-214ENST00000550008 SMIM20Q8N5G0 67 aa11.22□□□□□ -0.61
CUX1-214ENST00000550008 PIFOQ8TCI5 191 aa11.22□□□□□ -0.61
CUX1-214ENST00000550008 TMEM89A2RUT3 159 aa11.21□□□□□ -0.61
CUX1-214ENST00000550008 ANGP03950 147 aaKnown RBP11.21□□□□□ -0.61
CUX1-214ENST00000550008 Q9H8V8 135 aa11.21□□□□□ -0.61
CUX1-214ENST00000550008 PPDPFLQ8WWR9 84 aa11.21□□□□□ -0.61
CUX1-214ENST00000550008 ZNF702PQ9H963 129 aa11.21□□□□□ -0.61
CUX1-214ENST00000550008 S100A7L2Q5SY68 101 aa11.21□□□□□ -0.62
CUX1-214ENST00000550008 Q6ZTI0 123 aa11.21□□□□□ -0.62
CUX1-214ENST00000550008 IGLV10-54A0A075B6I4 117 aa11.21□□□□□ -0.62
CUX1-214ENST00000550008 DEFB135Q30KP9 77 aa11.21□□□□□ -0.62
CUX1-214ENST00000550008 DEFB114Q30KQ6 69 aa11.21□□□□□ -0.62
CUX1-214ENST00000550008 RNASE3P12724 160 aaKnown RBP11.2□□□□□ -0.62
CUX1-214ENST00000550008 WFDC10AQ9H1F0 79 aa11.2□□□□□ -0.62
CUX1-214ENST00000550008 LEPROTO15243 131 aa11.2□□□□□ -0.62
CUX1-214ENST00000550008 ATXN8Q156A1 80 aa11.19□□□□□ -0.62
CUX1-214ENST00000550008 CRYBA4P53673 196 aa11.19□□□□□ -0.62
CUX1-214ENST00000550008 ADGRG4Q8IZF6 3080 aa11.19□□□□□ -0.62
CUX1-214ENST00000550008 CRLF1O75462 422 aa11.19□□□□□ -0.62
CUX1-214ENST00000550008 IGLV1-40P01703 118 aa11.19□□□□□ -0.62
CUX1-214ENST00000550008 C20orf203Q8NBC4 194 aa11.19□□□□□ -0.62
CUX1-214ENST00000550008 GYPEP15421 78 aa11.19□□□□□ -0.62
CUX1-214ENST00000550008 A4D1N5 150 aa11.18□□□□□ -0.62
CUX1-214ENST00000550008 MED14OSP0DP75 135 aa11.18□□□□□ -0.62
CUX1-214ENST00000550008 F8P00451 2351 aa11.18□□□□□ -0.62
CUX1-214ENST00000550008 SMR3AQ99954 134 aa11.18□□□□□ -0.62
CUX1-214ENST00000550008 TRBV20-1A0A075B6N2 111 aa11.18□□□□□ -0.62
CUX1-214ENST00000550008 IGLL5B9A064 214 aa11.17□□□□□ -0.62
CUX1-214ENST00000550008 G3V4G9 280 aa11.17□□□□□ -0.62
CUX1-214ENST00000550008 C9orf153Q5TBE3 101 aa11.17□□□□□ -0.62
CUX1-214ENST00000550008 MRAPQ8TCY5 172 aa11.17□□□□□ -0.62
CUX1-214ENST00000550008 TRBV7-3A0A075B6L6 115 aa11.16□□□□□ -0.62
CUX1-214ENST00000550008 DCANP1Q8TF63 244 aa11.16□□□□□ -0.62
CUX1-214ENST00000550008 INAFM1C9JVW0 142 aa11.16□□□□□ -0.62
CUX1-214ENST00000550008 K7EQD1 137 aa11.16□□□□□ -0.62
CUX1-214ENST00000550008 HERVK_113P63121 156 aa11.16□□□□□ -0.62
CUX1-214ENST00000550008 WFDC2Q14508 124 aa11.16□□□□□ -0.62
CUX1-214ENST00000550008 TAL2Q16559 108 aa11.16□□□□□ -0.62
CUX1-214ENST00000550008 EDA2RQ9HAV5 297 aa11.16□□□□□ -0.62
CUX1-214ENST00000550008 MUSTN1Q8IVN3 82 aa11.16□□□□□ -0.62
CUX1-214ENST00000550008 E9PLD3 99 aa11.16□□□□□ -0.62
CUX1-214ENST00000550008 MAPKAPK5-AS1Q8N8E1 139 aa11.16□□□□□ -0.62
CUX1-214ENST00000550008 FLNAP21333 2647 aaKnown RBP11.16□□□□□ -0.62
CUX1-214ENST00000550008 APOC4P55056 127 aa11.15□□□□□ -0.62
CUX1-214ENST00000550008 Q6ZUT4 128 aa11.15□□□□□ -0.62
CUX1-214ENST00000550008 NRACQ8N912 160 aa11.15□□□□□ -0.62
CUX1-214ENST00000550008 TRAV12-1A0A0B4J245 112 aa11.15□□□□□ -0.62
CUX1-214ENST00000550008 SPANXA1Q9NS26 97 aa11.15□□□□□ -0.62
CUX1-214ENST00000550008 IFITM1P13164 125 aa11.15□□□□□ -0.62
CUX1-214ENST00000550008 Q8N976 141 aa11.15□□□□□ -0.62
CUX1-214ENST00000550008 TIMM17AQ99595 171 aa11.15□□□□□ -0.62
CUX1-214ENST00000550008 DMXL2Q8TDJ6 3036 aa11.15□□□□□ -0.63
CUX1-214ENST00000550008 LGALS9O00182 355 aa11.14□□□□□ -0.63
CUX1-214ENST00000550008 LRRC75A-AS1Q8N1F1 130 aa11.14□□□□□ -0.63
CUX1-214ENST00000550008 U3KQK5 164 aa11.14□□□□□ -0.63
CUX1-214ENST00000550008 CFAP47Q6ZTR5 3102 aa11.14□□□□□ -0.63
CUX1-214ENST00000550008 C16orf74Q96GX8 76 aa11.13□□□□□ -0.63
CUX1-214ENST00000550008 PSMG3-AS1Q96PY0 264 aa11.13□□□□□ -0.63
CUX1-214ENST00000550008 CFC1BP0CG36 223 aa11.12□□□□□ -0.63
CUX1-214ENST00000550008 CFC1P0CG37 223 aa11.12□□□□□ -0.63
CUX1-214ENST00000550008 LINC00482Q8N8I6 264 aa11.12□□□□□ -0.63
CUX1-214ENST00000550008 LINC01006Q8NI28 216 aa11.12□□□□□ -0.63
CUX1-214ENST00000550008 ATMQ13315 3056 aa11.12□□□□□ -0.63
CUX1-214ENST00000550008 RNF152Q8N8N0 203 aa11.12□□□□□ -0.63
CUX1-214ENST00000550008 ATP6V0E2Q8NHE4 81 aa11.12□□□□□ -0.63
CUX1-214ENST00000550008 M0QY20 66 aa11.12□□□□□ -0.63
CUX1-214ENST00000550008 ITPR3Q14573 2671 aa11.11□□□□□ -0.63
CUX1-214ENST00000550008 KLLNB2CW77 178 aa11.11□□□□□ -0.63
CUX1-214ENST00000550008 TRAV25A0A0B4J276 109 aa11.11□□□□□ -0.63
CUX1-214ENST00000550008 HHLA3Q9XRX5 114 aa11.1□□□□□ -0.63
CUX1-214ENST00000550008 IGHV3-30-3P0DP02 117 aa11.1□□□□□ -0.63
CUX1-214ENST00000550008 C9orf66Q5T8R8 295 aa11.1□□□□□ -0.63
CUX1-214ENST00000550008 NEXN-AS1Q8NBZ9 246 aa11.1□□□□□ -0.63
CUX1-214ENST00000550008 UBE2WQ96B02 151 aa11.1□□□□□ -0.63
CUX1-214ENST00000550008 LINC00467Q9BRT7 94 aa11.1□□□□□ -0.63
CUX1-214ENST00000550008 TMEM263Q8WUH6 116 aaKnown RBP11.1□□□□□ -0.63
CUX1-214ENST00000550008 ATRQ13535 2644 aa11.09□□□□□ -0.63
CUX1-214ENST00000550008 SLC25A20O43772 301 aa11.09□□□□□ -0.63
CUX1-214ENST00000550008 HIGD1BQ9P298 99 aa11.09□□□□□ -0.63
CUX1-214ENST00000550008 MUC4Q99102 2169 aa11.09□□□□□ -0.63
CUX1-214ENST00000550008 NTN5Q8WTR8 489 aaPredicted RBP11.09□□□□□ -0.63
CUX1-214ENST00000550008 DNAJC30Q96LL9 226 aa11.09□□□□□ -0.63
CUX1-214ENST00000550008 A8MZ25 164 aa11.09□□□□□ -0.63
CUX1-214ENST00000550008 DAZ2Q13117 558 aaKnown RBP11.08□□□□□ -0.64
CUX1-214ENST00000550008 DAZ4Q86SG3 579 aaKnown RBP11.08□□□□□ -0.64
CUX1-214ENST00000550008 DAZ3Q9NR90 486 aaKnown RBP11.08□□□□□ -0.64
CUX1-214ENST00000550008 CRYGDP07320 174 aa11.07□□□□□ -0.64
CUX1-214ENST00000550008 Q9HAA7 133 aa11.07□□□□□ -0.64
CUX1-214ENST00000550008 CDKN2A-AS1Q9UH64 79 aa11.07□□□□□ -0.64
CUX1-214ENST00000550008 ZZEF1O43149 2961 aa11.07□□□□□ -0.64
CUX1-214ENST00000550008 MGAM2Q2M2H8 2515 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 263.6 ms