RNA–Protein interactions for RNA: ENST00000549547.1

PRPF40B-210, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 5

Gene PRPF40B, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-210ENST00000549547 Q9HAA7 133 aa8.75□□□□□ -1.01
PRPF40B-210ENST00000549547 IGHV1-24A0A0C4DH33 117 aa8.74□□□□□ -1.01
PRPF40B-210ENST00000549547 A0A1B0GW15 77 aa8.74□□□□□ -1.01
PRPF40B-210ENST00000549547 TMEM262E9PQX1 116 aa8.74□□□□□ -1.01
PRPF40B-210ENST00000549547 GATD1Q8NB37 220 aa8.74□□□□□ -1.01
PRPF40B-210ENST00000549547 RMI2Q96E14 147 aa8.74□□□□□ -1.01
PRPF40B-210ENST00000549547 IQCJQ1A5X6 159 aa8.73□□□□□ -1.01
PRPF40B-210ENST00000549547 COX11Q9Y6N1 276 aa8.73□□□□□ -1.01
PRPF40B-210ENST00000549547 TRAV26-2A0A0B4J265 109 aa8.72□□□□□ -1.01
PRPF40B-210ENST00000549547 COLCA2A8K830 154 aa8.72□□□□□ -1.01
PRPF40B-210ENST00000549547 COTL1Q14019 142 aa8.72□□□□□ -1.01
PRPF40B-210ENST00000549547 Q8N3U1 123 aa8.72□□□□□ -1.01
PRPF40B-210ENST00000549547 MRAP2Q96G30 205 aa8.72□□□□□ -1.01
PRPF40B-210ENST00000549547 TRBV24-1A0A075B6N3 115 aa8.71□□□□□ -1.02
PRPF40B-210ENST00000549547 A0A087WTM6 91 aa8.71□□□□□ -1.02
PRPF40B-210ENST00000549547 TGIF2-C20orf24A0A0A6YYL0 155 aa8.71□□□□□ -1.02
PRPF40B-210ENST00000549547 PPP1R17O96001 155 aa8.71□□□□□ -1.02
PRPF40B-210ENST00000549547 CRPP02741 224 aa8.71□□□□□ -1.02
PRPF40B-210ENST00000549547 Q0VG73 95 aa8.71□□□□□ -1.02
PRPF40B-210ENST00000549547 NTM-AS1Q6ZSK4 140 aa8.71□□□□□ -1.02
PRPF40B-210ENST00000549547 SPATA12Q7Z6I5 190 aa8.71□□□□□ -1.02
PRPF40B-210ENST00000549547 TMEM243Q9BU79 118 aa8.71□□□□□ -1.02
PRPF40B-210ENST00000549547 KLK12Q9UKR0 248 aa8.71□□□□□ -1.02
PRPF40B-210ENST00000549547 TRAV9-1A0A075B6T8 112 aa8.7□□□□□ -1.02
PRPF40B-210ENST00000549547 TRBV6-5A0A0K0K1A5 114 aa8.7□□□□□ -1.02
PRPF40B-210ENST00000549547 C16orf90A8MZG2 172 aa8.7□□□□□ -1.02
PRPF40B-210ENST00000549547 UBE2L6O14933 153 aa8.7□□□□□ -1.02
PRPF40B-210ENST00000549547 NCR2O95944 276 aa8.7□□□□□ -1.02
PRPF40B-210ENST00000549547 RAB5BP61020 215 aa8.7□□□□□ -1.02
PRPF40B-210ENST00000549547 MPV17L2Q567V2 206 aa8.7□□□□□ -1.02
PRPF40B-210ENST00000549547 UBE2WQ96B02 151 aa8.7□□□□□ -1.02
PRPF40B-210ENST00000549547 RPL39LQ96EH5 51 aaKnown RBP8.7□□□□□ -1.02
PRPF40B-210ENST00000549547 DNAH5Q8TE73 4624 aa8.69□□□□□ -1.02
PRPF40B-210ENST00000549547 SDHAF1A6NFY7 115 aa8.69□□□□□ -1.02
PRPF40B-210ENST00000549547 RAB4AP20338 218 aa8.69□□□□□ -1.02
PRPF40B-210ENST00000549547 AMTP48728 403 aa8.69□□□□□ -1.02
PRPF40B-210ENST00000549547 CAMPP49913 170 aa8.69□□□□□ -1.02
PRPF40B-210ENST00000549547 GAGE6Q13070 117 aa8.69□□□□□ -1.02
PRPF40B-210ENST00000549547 CDPF1Q6NVV7 123 aa8.69□□□□□ -1.02
PRPF40B-210ENST00000549547 AMN1Q8IY45 258 aa8.69□□□□□ -1.02
PRPF40B-210ENST00000549547 BTF3L4Q96K17 158 aa8.69□□□□□ -1.02
PRPF40B-210ENST00000549547 ST20Q9HBF5 79 aa8.69□□□□□ -1.02
PRPF40B-210ENST00000549547 PGPEP1Q9NXJ5 209 aa8.69□□□□□ -1.02
PRPF40B-210ENST00000549547 I3L3M4 83 aa8.68□□□□□ -1.02
PRPF40B-210ENST00000549547 ANGP03950 147 aaKnown RBP8.68□□□□□ -1.02
PRPF40B-210ENST00000549547 RBX1P62877 108 aa8.68□□□□□ -1.02
PRPF40B-210ENST00000549547 HBBP68871 147 aa8.68□□□□□ -1.02
PRPF40B-210ENST00000549547 ATP5L2Q7Z4Y8 100 aa8.68□□□□□ -1.02
PRPF40B-210ENST00000549547 RNF185Q96GF1 192 aa8.68□□□□□ -1.02
PRPF40B-210ENST00000549547 IGKV2D-24A0A075B6R9 120 aa8.67□□□□□ -1.02
PRPF40B-210ENST00000549547 A0A1B0GXF2 115 aa8.67□□□□□ -1.02
PRPF40B-210ENST00000549547 APCSP02743 223 aa8.67□□□□□ -1.02
PRPF40B-210ENST00000549547 PMCHP20382 165 aa8.67□□□□□ -1.02
PRPF40B-210ENST00000549547 MIAQ16674 131 aa8.67□□□□□ -1.02
PRPF40B-210ENST00000549547 LBHQ53QV2 105 aaPredicted RBP8.67□□□□□ -1.02
PRPF40B-210ENST00000549547 FAM104BQ5XKR9 115 aa8.67□□□□□ -1.02
PRPF40B-210ENST00000549547 Q8N976 141 aa8.67□□□□□ -1.02
PRPF40B-210ENST00000549547 A0A1B0GUV1 79 aa8.66□□□□□ -1.02
PRPF40B-210ENST00000549547 LRCOL1A6NCL2 159 aa8.66□□□□□ -1.02
PRPF40B-210ENST00000549547 H7C423 109 aa8.66□□□□□ -1.02
PRPF40B-210ENST00000549547 MRPL54Q6P161 138 aaKnown RBP8.66□□□□□ -1.02
PRPF40B-210ENST00000549547 TMEM70Q9BUB7 260 aa8.66□□□□□ -1.02
PRPF40B-210ENST00000549547 C1orf43Q9BWL3 253 aa8.66□□□□□ -1.02
PRPF40B-210ENST00000549547 LRP1BQ9NZR2 4599 aa8.66□□□□□ -1.02
PRPF40B-210ENST00000549547 KRTAP10-2P60368 255 aa8.65□□□□□ -1.02
PRPF40B-210ENST00000549547 NTN5Q8WTR8 489 aaPredicted RBP8.65□□□□□ -1.02
PRPF40B-210ENST00000549547 TRBV27A0A0K0K1C4 114 aa8.64□□□□□ -1.03
PRPF40B-210ENST00000549547 RAB5AP20339 215 aa8.64□□□□□ -1.03
PRPF40B-210ENST00000549547 CKS2P33552 79 aa8.64□□□□□ -1.03
PRPF40B-210ENST00000549547 MRPL51Q4U2R6 128 aaKnown RBP8.64□□□□□ -1.03
PRPF40B-210ENST00000549547 ENHOQ6UWT2 76 aa8.64□□□□□ -1.03
PRPF40B-210ENST00000549547 Q8N814 137 aa8.64□□□□□ -1.03
PRPF40B-210ENST00000549547 PRR34Q9NV39 138 aa8.64□□□□□ -1.03
PRPF40B-210ENST00000549547 HERC2O95714 4834 aa8.63□□□□□ -1.03
PRPF40B-210ENST00000549547 C1orf196B1AJZ1 125 aa8.63□□□□□ -1.03
PRPF40B-210ENST00000549547 LINC00587B1AMM8 73 aa8.63□□□□□ -1.03
PRPF40B-210ENST00000549547 VCYO14598 125 aa8.63□□□□□ -1.03
PRPF40B-210ENST00000549547 PPBPP02775 128 aa8.63□□□□□ -1.03
PRPF40B-210ENST00000549547 RPS10P46783 165 aaKnown RBP8.63□□□□□ -1.03
PRPF40B-210ENST00000549547 POLR2KP53803 58 aaKnown RBP8.63□□□□□ -1.03
PRPF40B-210ENST00000549547 SUMO2P61956 95 aaKnown RBP8.63□□□□□ -1.03
PRPF40B-210ENST00000549547 AMMECR1LQ6DCA0 310 aa8.63□□□□□ -1.03
PRPF40B-210ENST00000549547 TMEM136Q6ZRR5 245 aa8.63□□□□□ -1.03
PRPF40B-210ENST00000549547 LINC00269Q8N2A0 174 aa8.63□□□□□ -1.03
PRPF40B-210ENST00000549547 NRACQ8N912 160 aa8.63□□□□□ -1.03
PRPF40B-210ENST00000549547 C20orf78Q9BR46 151 aa8.63□□□□□ -1.03
PRPF40B-210ENST00000549547 TRAV8-4A0A0B4J246 113 aa8.62□□□□□ -1.03
PRPF40B-210ENST00000549547 SMKR1H3BMG3 65 aa8.62□□□□□ -1.03
PRPF40B-210ENST00000549547 PHOX2AO14813 284 aa8.62□□□□□ -1.03
PRPF40B-210ENST00000549547 GAS8-AS1O95177 125 aa8.62□□□□□ -1.03
PRPF40B-210ENST00000549547 ZNF25P17030 456 aaPredicted RBP8.62□□□□□ -1.03
PRPF40B-210ENST00000549547 FCER1GP30273 86 aa8.62□□□□□ -1.03
PRPF40B-210ENST00000549547 REG3AQ06141 175 aa8.62□□□□□ -1.03
PRPF40B-210ENST00000549547 DEFB104AQ8WTQ1 72 aa8.62□□□□□ -1.03
PRPF40B-210ENST00000549547 KIR2DL4Q99706 377 aa8.62□□□□□ -1.03
PRPF40B-210ENST00000549547 GNB1LQ9BYB4 327 aa8.62□□□□□ -1.03
PRPF40B-210ENST00000549547 KIAA1109Q2LD37 5005 aa8.62□□□□□ -1.03
PRPF40B-210ENST00000549547 IGLV5-52A0A0A0MRZ9 124 aa8.61□□□□□ -1.03
PRPF40B-210ENST00000549547 TCAPO15273 167 aa8.61□□□□□ -1.03
PRPF40B-210ENST00000549547 CDK2AP2O75956 126 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms