RNA–Protein interactions for RNA: ENST00000548650.1

CHMP1A-205, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-205ENST00000548650 HMCN2Q8NDA2 5059 aa11.17□□□□□ -0.62
CHMP1A-205ENST00000548650 A0A1B0GUV1 79 aa11.17□□□□□ -0.62
CHMP1A-205ENST00000548650 RPL37AP61513 92 aaKnown RBP11.17□□□□□ -0.62
CHMP1A-205ENST00000548650 BLOC1S1P78537 153 aa11.17□□□□□ -0.62
CHMP1A-205ENST00000548650 NIT2Q9NQR4 276 aa11.17□□□□□ -0.62
CHMP1A-205ENST00000548650 BIN3Q9NQY0 253 aa11.17□□□□□ -0.62
CHMP1A-205ENST00000548650 OXTP01178 125 aa11.16□□□□□ -0.62
CHMP1A-205ENST00000548650 NTF3P20783 257 aa11.16□□□□□ -0.62
CHMP1A-205ENST00000548650 HNRNPA3P51991 378 aaKnown RBP11.16□□□□□ -0.62
CHMP1A-205ENST00000548650 CNBPP62633 177 aaKnown RBP11.16□□□□□ -0.62
CHMP1A-205ENST00000548650 CLRN3Q8NCR9 226 aa11.16□□□□□ -0.62
CHMP1A-205ENST00000548650 TRAV8-4A0A0B4J246 113 aa11.15□□□□□ -0.62
CHMP1A-205ENST00000548650 WDR73Q6P4I2 378 aa11.15□□□□□ -0.62
CHMP1A-205ENST00000548650 SDIM1Q6ZPB5 146 aa11.15□□□□□ -0.62
CHMP1A-205ENST00000548650 NUDT10Q8NFP7 164 aa11.15□□□□□ -0.62
CHMP1A-205ENST00000548650 NUDT11Q96G61 164 aa11.15□□□□□ -0.62
CHMP1A-205ENST00000548650 hDV102S1A0JD36 115 aa11.14□□□□□ -0.63
CHMP1A-205ENST00000548650 K7EN84 100 aa11.14□□□□□ -0.63
CHMP1A-205ENST00000548650 TAGLN2P37802 199 aaKnown RBP11.14□□□□□ -0.63
CHMP1A-205ENST00000548650 CIRBPQ14011 172 aaKnown RBP11.14□□□□□ -0.63
CHMP1A-205ENST00000548650 RPP21Q9H633 154 aaKnown RBP11.14□□□□□ -0.63
CHMP1A-205ENST00000548650 AMTP48728 403 aa11.13□□□□□ -0.63
CHMP1A-205ENST00000548650 COTL1Q14019 142 aa11.13□□□□□ -0.63
CHMP1A-205ENST00000548650 RNASE7Q9H1E1 156 aaKnown RBP11.13□□□□□ -0.63
CHMP1A-205ENST00000548650 TRAV26-2A0A0B4J265 109 aa11.12□□□□□ -0.63
CHMP1A-205ENST00000548650 TWIST1Q15672 202 aa11.12□□□□□ -0.63
CHMP1A-205ENST00000548650 GATD1Q8NB37 220 aa11.12□□□□□ -0.63
CHMP1A-205ENST00000548650 UBE2L6O14933 153 aa11.11□□□□□ -0.63
CHMP1A-205ENST00000548650 SLPIP03973 132 aa11.11□□□□□ -0.63
CHMP1A-205ENST00000548650 LYPD6BQ8NI32 183 aa11.11□□□□□ -0.63
CHMP1A-205ENST00000548650 GTSF1Q8WW33 167 aa11.11□□□□□ -0.63
CHMP1A-205ENST00000548650 OCC1Q8TAD7 63 aa11.1□□□□□ -0.63
CHMP1A-205ENST00000548650 IGHV3-64A0A075B6Q5 118 aa11.09□□□□□ -0.63
CHMP1A-205ENST00000548650 SERTAD4-AS1Q5TG53 156 aa11.09□□□□□ -0.63
CHMP1A-205ENST00000548650 C15orf56Q8N910 161 aa11.09□□□□□ -0.63
CHMP1A-205ENST00000548650 RPL39LQ96EH5 51 aaKnown RBP11.09□□□□□ -0.63
CHMP1A-205ENST00000548650 CHTF8P0CG12 524 aa11.08□□□□□ -0.64
CHMP1A-205ENST00000548650 CEBPGP53567 150 aa11.08□□□□□ -0.64
CHMP1A-205ENST00000548650 AP5S1Q9NUS5 200 aa11.08□□□□□ -0.64
CHMP1A-205ENST00000548650 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.07□□□□□ -0.64
CHMP1A-205ENST00000548650 FOXA3P55318 350 aaPredicted RBP11.07□□□□□ -0.64
CHMP1A-205ENST00000548650 SPACA4Q8TDM5 124 aa11.07□□□□□ -0.64
CHMP1A-205ENST00000548650 EIF5A2Q9GZV4 153 aaKnown RBP11.07□□□□□ -0.64
CHMP1A-205ENST00000548650 GAGE12HA6NDE8 117 aa11.06□□□□□ -0.64
CHMP1A-205ENST00000548650 TMEM250H0YL14 139 aa11.06□□□□□ -0.64
CHMP1A-205ENST00000548650 NCR2O95944 276 aa11.06□□□□□ -0.64
CHMP1A-205ENST00000548650 IGKV3OR2-268A0A0C4DH90 116 aa11.05□□□□□ -0.64
CHMP1A-205ENST00000548650 RNF185Q96GF1 192 aa11.05□□□□□ -0.64
CHMP1A-205ENST00000548650 FAM210AQ96ND0 272 aa11.05□□□□□ -0.64
CHMP1A-205ENST00000548650 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.04□□□□□ -0.64
CHMP1A-205ENST00000548650 A0A087WYN8 130 aa11.04□□□□□ -0.64
CHMP1A-205ENST00000548650 IGKV2-29A2NJV5 120 aaPredicted RBP11.04□□□□□ -0.64
CHMP1A-205ENST00000548650 SDHAF1A6NFY7 115 aa11.04□□□□□ -0.64
CHMP1A-205ENST00000548650 APCSP02743 223 aa11.04□□□□□ -0.64
CHMP1A-205ENST00000548650 AMMECR1LQ6DCA0 310 aa11.04□□□□□ -0.64
CHMP1A-205ENST00000548650 TEX261Q6UWH6 196 aa11.04□□□□□ -0.64
CHMP1A-205ENST00000548650 FAM231DQ6ZW35 169 aa11.04□□□□□ -0.64
CHMP1A-205ENST00000548650 H7C423 109 aa11.03□□□□□ -0.64
CHMP1A-205ENST00000548650 GATCO43716 136 aaKnown RBP11.03□□□□□ -0.64
CHMP1A-205ENST00000548650 SMIM15Q7Z3B0 74 aa11.03□□□□□ -0.64
CHMP1A-205ENST00000548650 CHCHD10Q8WYQ3 142 aaPredicted RBP11.03□□□□□ -0.64
CHMP1A-205ENST00000548650 UBR4Q5T4S7 5183 aa11.02□□□□□ -0.65
CHMP1A-205ENST00000548650 GVQW2A0A096LPI5 108 aaPredicted RBP11.02□□□□□ -0.65
CHMP1A-205ENST00000548650 FGF6P10767 208 aa11.02□□□□□ -0.65
CHMP1A-205ENST00000548650 HIGD2BQ4VC39 106 aa11.02□□□□□ -0.65
CHMP1A-205ENST00000548650 CT83Q5H943 113 aa11.02□□□□□ -0.65
CHMP1A-205ENST00000548650 PLAC8Q9NZF1 115 aa11.02□□□□□ -0.65
CHMP1A-205ENST00000548650 TRBV6-5A0A0K0K1A5 114 aa11.01□□□□□ -0.65
CHMP1A-205ENST00000548650 A8MWL6 223 aa11.01□□□□□ -0.65
CHMP1A-205ENST00000548650 SRP19P09132 144 aaKnown RBP11.01□□□□□ -0.65
CHMP1A-205ENST00000548650 MT1HL1P0DM35 61 aa11.01□□□□□ -0.65
CHMP1A-205ENST00000548650 RNASEKQ6P5S7 137 aaKnown RBP11.01□□□□□ -0.65
CHMP1A-205ENST00000548650 CFAP161Q6P656 301 aa11.01□□□□□ -0.65
CHMP1A-205ENST00000548650 SMIM7Q9BQ49 75 aa11.01□□□□□ -0.65
CHMP1A-205ENST00000548650 FAM231BA6NCW3 169 aa11□□□□□ -0.65
CHMP1A-205ENST00000548650 GAS8-AS1O95177 125 aa11□□□□□ -0.65
CHMP1A-205ENST00000548650 ZNF25P17030 456 aaPredicted RBP11□□□□□ -0.65
CHMP1A-205ENST00000548650 FOXI1Q12951 378 aa11□□□□□ -0.65
CHMP1A-205ENST00000548650 PLA2G2DQ9UNK4 145 aa11□□□□□ -0.65
CHMP1A-205ENST00000548650 ZNF727A8MUV8 499 aa10.99□□□□□ -0.65
CHMP1A-205ENST00000548650 I3L3M4 83 aa10.99□□□□□ -0.65
CHMP1A-205ENST00000548650 RPS10P46783 165 aaKnown RBP10.99□□□□□ -0.65
CHMP1A-205ENST00000548650 COX6A2Q02221 97 aa10.99□□□□□ -0.65
CHMP1A-205ENST00000548650 Q6ZRU5 148 aa10.99□□□□□ -0.65
CHMP1A-205ENST00000548650 NDUFS6O75380 124 aaKnown RBP10.98□□□□□ -0.65
CHMP1A-205ENST00000548650 TSHBP01222 138 aa10.98□□□□□ -0.65
CHMP1A-205ENST00000548650 ESDP10768 282 aa10.98□□□□□ -0.65
CHMP1A-205ENST00000548650 OR5A1Q8NGJ0 315 aa10.98□□□□□ -0.65
CHMP1A-205ENST00000548650 PRSS3P2Q8NHM4 247 aa10.98□□□□□ -0.65
CHMP1A-205ENST00000548650 TMEM242Q9NWH2 141 aa10.98□□□□□ -0.65
CHMP1A-205ENST00000548650 PHOX2AO14813 284 aa10.97□□□□□ -0.65
CHMP1A-205ENST00000548650 LINC01551Q86U37 167 aa10.97□□□□□ -0.65
CHMP1A-205ENST00000548650 DPH3Q96FX2 82 aa10.97□□□□□ -0.65
CHMP1A-205ENST00000548650 IGKV2-24A0A0C4DH68 120 aa10.96□□□□□ -0.65
CHMP1A-205ENST00000548650 HIGD1CA8MV81 97 aa10.96□□□□□ -0.65
CHMP1A-205ENST00000548650 PMCHP20382 165 aa10.96□□□□□ -0.65
CHMP1A-205ENST00000548650 XCL1P47992 114 aa10.96□□□□□ -0.65
CHMP1A-205ENST00000548650 SRSF3P84103 164 aaKnown RBP10.96□□□□□ -0.65
CHMP1A-205ENST00000548650 BORCS7Q96B45 105 aa10.96□□□□□ -0.65
CHMP1A-205ENST00000548650 TMEM191AQ9H0A3 160 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms