RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 TMEM243Q9BU79 118 aa9.36□□□□□ -0.91
PTCH1-213ENST00000546820 SMCO4Q9NRQ5 59 aa9.36□□□□□ -0.91
PTCH1-213ENST00000546820 LAMTOR2Q9Y2Q5 125 aa9.36□□□□□ -0.91
PTCH1-213ENST00000546820 TRBV27A0A0K0K1C4 114 aa9.35□□□□□ -0.91
PTCH1-213ENST00000546820 UBE2L6O14933 153 aa9.35□□□□□ -0.91
PTCH1-213ENST00000546820 TCAPO15273 167 aa9.35□□□□□ -0.91
PTCH1-213ENST00000546820 MT-ND6P03923 174 aa9.35□□□□□ -0.91
PTCH1-213ENST00000546820 FCER1GP30273 86 aa9.35□□□□□ -0.91
PTCH1-213ENST00000546820 C6orf223Q8N319 242 aa9.35□□□□□ -0.91
PTCH1-213ENST00000546820 RPL32P62910 135 aaKnown RBP9.34□□□□□ -0.91
PTCH1-213ENST00000546820 ATRAIDQ6UW56 229 aa9.34□□□□□ -0.91
PTCH1-213ENST00000546820 NFE4Q86UQ8 179 aa9.34□□□□□ -0.91
PTCH1-213ENST00000546820 TGIF2-C20orf24A0A0A6YYL0 155 aa9.33□□□□□ -0.92
PTCH1-213ENST00000546820 IBA57-AS1B1ANH7 110 aa9.33□□□□□ -0.92
PTCH1-213ENST00000546820 H7C423 109 aa9.33□□□□□ -0.92
PTCH1-213ENST00000546820 GAGE6Q13070 117 aa9.33□□□□□ -0.92
PTCH1-213ENST00000546820 DEFB104AQ8WTQ1 72 aa9.33□□□□□ -0.92
PTCH1-213ENST00000546820 NPYP01303 97 aa9.32□□□□□ -0.92
PTCH1-213ENST00000546820 FABP9Q0Z7S8 132 aa9.32□□□□□ -0.92
PTCH1-213ENST00000546820 KRTAP1-5Q9BYS1 174 aa9.32□□□□□ -0.92
PTCH1-213ENST00000546820 MAP1LC3AQ9H492 121 aa9.32□□□□□ -0.92
PTCH1-213ENST00000546820 KMT2CQ8NEZ4 4911 aaKnown RBP9.32□□□□□ -0.92
PTCH1-213ENST00000546820 VPS13DQ5THJ4 4388 aa9.31□□□□□ -0.92
PTCH1-213ENST00000546820 TRAV8-3A0A0A6YYJ7 113 aa9.31□□□□□ -0.92
PTCH1-213ENST00000546820 PRSS47A8MTI9 375 aa9.31□□□□□ -0.92
PTCH1-213ENST00000546820 TSHBP01222 138 aa9.31□□□□□ -0.92
PTCH1-213ENST00000546820 RAB5AP20339 215 aa9.31□□□□□ -0.92
PTCH1-213ENST00000546820 LAGE3Q14657 143 aa9.31□□□□□ -0.92
PTCH1-213ENST00000546820 LINC00336Q6ZUF6 198 aa9.31□□□□□ -0.92
PTCH1-213ENST00000546820 SMIM2Q9BVW6 85 aa9.31□□□□□ -0.92
PTCH1-213ENST00000546820 MRPL18Q9H0U6 180 aaKnown RBP9.31□□□□□ -0.92
PTCH1-213ENST00000546820 KLK12Q9UKR0 248 aa9.31□□□□□ -0.92
PTCH1-213ENST00000546820 TRAPPC1Q9Y5R8 145 aa9.31□□□□□ -0.92
PTCH1-213ENST00000546820 DNAH1Q9P2D7 4330 aa9.31□□□□□ -0.92
PTCH1-213ENST00000546820 A0A1B0GUV1 79 aa9.3□□□□□ -0.92
PTCH1-213ENST00000546820 ANGP03950 147 aaKnown RBP9.3□□□□□ -0.92
PTCH1-213ENST00000546820 RBX1P62877 108 aa9.3□□□□□ -0.92
PTCH1-213ENST00000546820 SMAGPQ0VAQ4 97 aa9.3□□□□□ -0.92
PTCH1-213ENST00000546820 KIAA1644Q3SXP7 199 aa9.3□□□□□ -0.92
PTCH1-213ENST00000546820 MPV17L2Q567V2 206 aa9.3□□□□□ -0.92
PTCH1-213ENST00000546820 AMMECR1LQ6DCA0 310 aa9.3□□□□□ -0.92
PTCH1-213ENST00000546820 TMEM18Q96B42 140 aa9.3□□□□□ -0.92
PTCH1-213ENST00000546820 LOC389332A0A1B0GUA5 103 aa9.29□□□□□ -0.92
PTCH1-213ENST00000546820 ESDP10768 282 aa9.29□□□□□ -0.92
PTCH1-213ENST00000546820 Q0VG73 95 aa9.29□□□□□ -0.92
PTCH1-213ENST00000546820 Q8N3U1 123 aa9.29□□□□□ -0.92
PTCH1-213ENST00000546820 CBLN2Q8IUK8 224 aa9.28□□□□□ -0.92
PTCH1-213ENST00000546820 Q8N976 141 aa9.28□□□□□ -0.92
PTCH1-213ENST00000546820 RMI2Q96E14 147 aa9.28□□□□□ -0.92
PTCH1-213ENST00000546820 TMEM101Q96IK0 257 aa9.28□□□□□ -0.92
PTCH1-213ENST00000546820 TM2D2Q9BX73 214 aa9.28□□□□□ -0.92
PTCH1-213ENST00000546820 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.27□□□□□ -0.93
PTCH1-213ENST00000546820 IGKV2-29A2NJV5 120 aaPredicted RBP9.27□□□□□ -0.93
PTCH1-213ENST00000546820 K7EMI3 77 aa9.27□□□□□ -0.93
PTCH1-213ENST00000546820 RTL8CO15255 209 aa9.27□□□□□ -0.93
PTCH1-213ENST00000546820 CRPP02741 224 aa9.27□□□□□ -0.93
PTCH1-213ENST00000546820 ZNF25P17030 456 aaPredicted RBP9.27□□□□□ -0.93
PTCH1-213ENST00000546820 DGAT2L7PQ6IED9 249 aa9.27□□□□□ -0.93
PTCH1-213ENST00000546820 RNASEKQ6P5S7 137 aaKnown RBP9.27□□□□□ -0.93
PTCH1-213ENST00000546820 Q8N8P6 123 aa9.27□□□□□ -0.93
PTCH1-213ENST00000546820 UBE2WQ96B02 151 aa9.27□□□□□ -0.93
PTCH1-213ENST00000546820 YPEL4Q96NS1 127 aa9.27□□□□□ -0.93
PTCH1-213ENST00000546820 ALKBH7Q9BT30 221 aaPredicted RBP9.27□□□□□ -0.93
PTCH1-213ENST00000546820 Q9HAA7 133 aa9.27□□□□□ -0.93
PTCH1-213ENST00000546820 NXT2Q9NPJ8 142 aaKnown RBP9.27□□□□□ -0.93
PTCH1-213ENST00000546820 COX11Q9Y6N1 276 aa9.27□□□□□ -0.93
PTCH1-213ENST00000546820 SACSQ9NZJ4 4579 aa9.26□□□□□ -0.93
PTCH1-213ENST00000546820 KMT2AQ03164 3969 aa9.26□□□□□ -0.93
PTCH1-213ENST00000546820 PSCAO43653 123 aa9.26□□□□□ -0.93
PTCH1-213ENST00000546820 FGF6P10767 208 aa9.26□□□□□ -0.93
PTCH1-213ENST00000546820 G0S2P27469 103 aa9.26□□□□□ -0.93
PTCH1-213ENST00000546820 PRSS3P2Q8NHM4 247 aa9.26□□□□□ -0.93
PTCH1-213ENST00000546820 PRSS29PA6NIE9 313 aa9.25□□□□□ -0.93
PTCH1-213ENST00000546820 S100A1P23297 94 aa9.25□□□□□ -0.93
PTCH1-213ENST00000546820 ORMDL2Q53FV1 153 aa9.25□□□□□ -0.93
PTCH1-213ENST00000546820 MRPL52Q86TS9 123 aaKnown RBP9.25□□□□□ -0.93
PTCH1-213ENST00000546820 LINC00269Q8N2A0 174 aa9.25□□□□□ -0.93
PTCH1-213ENST00000546820 C20orf203Q8NBC4 194 aa9.25□□□□□ -0.93
PTCH1-213ENST00000546820 OR5A1Q8NGJ0 315 aa9.25□□□□□ -0.93
PTCH1-213ENST00000546820 IGLV4-60A0A075B6I1 120 aa9.24□□□□□ -0.93
PTCH1-213ENST00000546820 IFI27P40305 119 aaPredicted RBP9.24□□□□□ -0.93
PTCH1-213ENST00000546820 REG3AQ06141 175 aa9.24□□□□□ -0.93
PTCH1-213ENST00000546820 MIAQ16674 131 aa9.24□□□□□ -0.93
PTCH1-213ENST00000546820 IGKV2D-24A0A075B6R9 120 aa9.23□□□□□ -0.93
PTCH1-213ENST00000546820 ENHOQ6UWT2 76 aa9.23□□□□□ -0.93
PTCH1-213ENST00000546820 TIMM21Q9BVV7 248 aa9.23□□□□□ -0.93
PTCH1-213ENST00000546820 C1orf43Q9BWL3 253 aa9.23□□□□□ -0.93
PTCH1-213ENST00000546820 PRR34Q9NV39 138 aa9.23□□□□□ -0.93
PTCH1-213ENST00000546820 CSDC2Q9Y534 153 aaKnown RBP9.23□□□□□ -0.93
PTCH1-213ENST00000546820 TRAV8-4A0A0B4J246 113 aa9.22□□□□□ -0.93
PTCH1-213ENST00000546820 EREGO14944 169 aa9.22□□□□□ -0.93
PTCH1-213ENST00000546820 Q6ZRN7 208 aaPredicted RBP9.22□□□□□ -0.93
PTCH1-213ENST00000546820 HYDINQ4G0P3 5121 aa9.22□□□□□ -0.93
PTCH1-213ENST00000546820 DNAH6Q9C0G6 4158 aa9.21□□□□□ -0.93
PTCH1-213ENST00000546820 COLCA2A8K830 154 aa9.21□□□□□ -0.94
PTCH1-213ENST00000546820 FA2HQ7L5A8 372 aa9.21□□□□□ -0.94
PTCH1-213ENST00000546820 ZNF664Q8N3J9 261 aa9.21□□□□□ -0.94
PTCH1-213ENST00000546820 UBE2D4Q9Y2X8 147 aa9.21□□□□□ -0.94
PTCH1-213ENST00000546820 RAB5BP61020 215 aa9.2□□□□□ -0.94
PTCH1-213ENST00000546820 TNP2Q05952 138 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms