RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 BAGE3Q86Y29 109 aa11.12□□□□□ -0.63
PRPF40A-212ENST00000545856 TRBV25-1A0A075B6N4 114 aa11.11□□□□□ -0.63
PRPF40A-212ENST00000545856 H7C423 109 aa11.11□□□□□ -0.63
PRPF40A-212ENST00000545856 LINC00614P0C842 121 aa11.11□□□□□ -0.63
PRPF40A-212ENST00000545856 IQCJQ1A5X6 159 aa11.11□□□□□ -0.63
PRPF40A-212ENST00000545856 TMEM18Q96B42 140 aa11.11□□□□□ -0.63
PRPF40A-212ENST00000545856 Q9UF83 564 aa11.11□□□□□ -0.63
PRPF40A-212ENST00000545856 TRBV6-8A0A0A6YYG3 113 aa11.1□□□□□ -0.63
PRPF40A-212ENST00000545856 IGHV1-24A0A0C4DH33 117 aa11.1□□□□□ -0.63
PRPF40A-212ENST00000545856 NUDT3O95989 172 aa11.1□□□□□ -0.63
PRPF40A-212ENST00000545856 IFI27P40305 119 aaPredicted RBP11.1□□□□□ -0.63
PRPF40A-212ENST00000545856 LAGE3Q14657 143 aa11.1□□□□□ -0.63
PRPF40A-212ENST00000545856 LELP1Q5T871 98 aa11.1□□□□□ -0.63
PRPF40A-212ENST00000545856 TENM2Q9NT68 2774 aa11.09□□□□□ -0.63
PRPF40A-212ENST00000545856 LOC389332A0A1B0GUA5 103 aa11.09□□□□□ -0.63
PRPF40A-212ENST00000545856 TSHBP01222 138 aa11.09□□□□□ -0.63
PRPF40A-212ENST00000545856 ESDP10768 282 aa11.09□□□□□ -0.63
PRPF40A-212ENST00000545856 CCL18P55774 89 aa11.08□□□□□ -0.64
PRPF40A-212ENST00000545856 NIT1Q86X76 327 aa11.08□□□□□ -0.64
PRPF40A-212ENST00000545856 CHCHD7Q9BUK0 85 aa11.08□□□□□ -0.64
PRPF40A-212ENST00000545856 APLNQ9ULZ1 77 aa11.08□□□□□ -0.64
PRPF40A-212ENST00000545856 PLECQ15149 4684 aaKnown RBP11.08□□□□□ -0.64
PRPF40A-212ENST00000545856 TRAV8-6A0A0B4J262 113 aa11.07□□□□□ -0.64
PRPF40A-212ENST00000545856 NPSP0C0P6 89 aa11.07□□□□□ -0.64
PRPF40A-212ENST00000545856 AMTP48728 403 aa11.07□□□□□ -0.64
PRPF40A-212ENST00000545856 LYPD5Q6UWN5 251 aa11.07□□□□□ -0.64
PRPF40A-212ENST00000545856 STARD9Q9P2P6 4700 aa11.07□□□□□ -0.64
PRPF40A-212ENST00000545856 HSBP1O75506 76 aa11.06□□□□□ -0.64
PRPF40A-212ENST00000545856 S100A6P06703 90 aa11.06□□□□□ -0.64
PRPF40A-212ENST00000545856 PACRGQ96M98 296 aaPredicted RBP11.06□□□□□ -0.64
PRPF40A-212ENST00000545856 UPK3BQ9BT76 320 aa11.06□□□□□ -0.64
PRPF40A-212ENST00000545856 TMEM243Q9BU79 118 aa11.06□□□□□ -0.64
PRPF40A-212ENST00000545856 IGHV3-38A0A0C4DH36 116 aa11.05□□□□□ -0.64
PRPF40A-212ENST00000545856 RNASEKQ6P5S7 137 aaKnown RBP11.05□□□□□ -0.64
PRPF40A-212ENST00000545856 C20orf203Q8NBC4 194 aa11.05□□□□□ -0.64
PRPF40A-212ENST00000545856 TIMM21Q9BVV7 248 aa11.05□□□□□ -0.64
PRPF40A-212ENST00000545856 MRPS16Q9Y3D3 137 aaKnown RBP11.05□□□□□ -0.64
PRPF40A-212ENST00000545856 K7EP13 123 aa11.04□□□□□ -0.64
PRPF40A-212ENST00000545856 HBDP02042 147 aa11.04□□□□□ -0.64
PRPF40A-212ENST00000545856 ZNF25P17030 456 aaPredicted RBP11.04□□□□□ -0.64
PRPF40A-212ENST00000545856 NTM-AS1Q6ZSK4 140 aa11.04□□□□□ -0.64
PRPF40A-212ENST00000545856 URB1-AS1Q96HZ7 61 aa11.04□□□□□ -0.64
PRPF40A-212ENST00000545856 CYSLTR1Q9Y271 337 aa11.04□□□□□ -0.64
PRPF40A-212ENST00000545856 UBE2L6O14933 153 aa11.03□□□□□ -0.64
PRPF40A-212ENST00000545856 SERF1AO75920 110 aa11.03□□□□□ -0.64
PRPF40A-212ENST00000545856 MRPL52Q86TS9 123 aaKnown RBP11.03□□□□□ -0.64
PRPF40A-212ENST00000545856 CSDC2Q9Y534 153 aaKnown RBP11.03□□□□□ -0.64
PRPF40A-212ENST00000545856 ESRGQ1W209 222 aa11.03□□□□□ -0.64
PRPF40A-212ENST00000545856 SPANXA1Q9NS26 97 aa11.03□□□□□ -0.64
PRPF40A-212ENST00000545856 PYGO1Q9Y3Y4 419 aa11.03□□□□□ -0.64
PRPF40A-212ENST00000545856 A0A1B0GUV1 79 aa11.02□□□□□ -0.65
PRPF40A-212ENST00000545856 PAPPA-AS1Q5QFB9 102 aa11.02□□□□□ -0.65
PRPF40A-212ENST00000545856 CASC10Q5T4H9 136 aa11.02□□□□□ -0.65
PRPF40A-212ENST00000545856 NDUFA6P56556 154 aa11.01□□□□□ -0.65
PRPF40A-212ENST00000545856 LINC00310P59036 64 aa11.01□□□□□ -0.65
PRPF40A-212ENST00000545856 C2orf66Q6UXQ4 117 aa11.01□□□□□ -0.65
PRPF40A-212ENST00000545856 TOMM6Q96B49 74 aa11.01□□□□□ -0.65
PRPF40A-212ENST00000545856 TIMM17AQ99595 171 aa11.01□□□□□ -0.65
PRPF40A-212ENST00000545856 CHCHD5Q9BSY4 110 aa11.01□□□□□ -0.65
PRPF40A-212ENST00000545856 BTF3P20290 206 aaKnown RBP11□□□□□ -0.65
PRPF40A-212ENST00000545856 ZFAND6Q6FIF0 208 aa11□□□□□ -0.65
PRPF40A-212ENST00000545856 ATP5LO75964 103 aa10.99□□□□□ -0.65
PRPF40A-212ENST00000545856 TMEM141Q96I45 108 aa10.99□□□□□ -0.65
PRPF40A-212ENST00000545856 LINC00588Q9Y4M8 146 aa10.99□□□□□ -0.65
PRPF40A-212ENST00000545856 A0A087WX48 190 aa10.98□□□□□ -0.65
PRPF40A-212ENST00000545856 DNAH10OSP0CZ25 163 aa10.98□□□□□ -0.65
PRPF40A-212ENST00000545856 FGF6P10767 208 aa10.98□□□□□ -0.65
PRPF40A-212ENST00000545856 MRPS36P82909 103 aaKnown RBP10.98□□□□□ -0.65
PRPF40A-212ENST00000545856 LINC01556Q5JQF7 62 aa10.98□□□□□ -0.65
PRPF40A-212ENST00000545856 AMMECR1LQ6DCA0 310 aa10.98□□□□□ -0.65
PRPF40A-212ENST00000545856 LGALS9CQ6DKI2 356 aa10.98□□□□□ -0.65
PRPF40A-212ENST00000545856 ERASQ7Z444 233 aa10.98□□□□□ -0.65
PRPF40A-212ENST00000545856 TMEM101Q96IK0 257 aa10.98□□□□□ -0.65
PRPF40A-212ENST00000545856 A0A096LNJ9 63 aa10.97□□□□□ -0.65
PRPF40A-212ENST00000545856 PDZD11Q5EBL8 140 aa10.97□□□□□ -0.65
PRPF40A-212ENST00000545856 UBE2DNLQ8IWF7 75 aa10.97□□□□□ -0.65
PRPF40A-212ENST00000545856 C10orf126Q8N4M7 172 aa10.97□□□□□ -0.65
PRPF40A-212ENST00000545856 HSPB8Q9UJY1 196 aa10.97□□□□□ -0.65
PRPF40A-212ENST00000545856 UBE2D4Q9Y2X8 147 aa10.97□□□□□ -0.65
PRPF40A-212ENST00000545856 C5orf52A6NGY3 159 aa10.96□□□□□ -0.65
PRPF40A-212ENST00000545856 SIVA1O15304 175 aa10.96□□□□□ -0.65
PRPF40A-212ENST00000545856 LEPROTL1O95214 131 aa10.96□□□□□ -0.65
PRPF40A-212ENST00000545856 DGAT2L7PQ6IED9 249 aa10.96□□□□□ -0.65
PRPF40A-212ENST00000545856 VPS13DQ5THJ4 4388 aa10.95□□□□□ -0.66
PRPF40A-212ENST00000545856 OR5A1Q8NGJ0 315 aa10.95□□□□□ -0.66
PRPF40A-212ENST00000545856 SCGB3A1Q96QR1 104 aa10.95□□□□□ -0.66
PRPF40A-212ENST00000545856 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.94□□□□□ -0.66
PRPF40A-212ENST00000545856 TRAV9-2A0A087WT02 112 aa10.94□□□□□ -0.66
PRPF40A-212ENST00000545856 IGKV2-29A2NJV5 120 aaPredicted RBP10.94□□□□□ -0.66
PRPF40A-212ENST00000545856 IGIPA6NJ69 53 aa10.94□□□□□ -0.66
PRPF40A-212ENST00000545856 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.94□□□□□ -0.66
PRPF40A-212ENST00000545856 S100A2P29034 98 aa10.94□□□□□ -0.66
PRPF40A-212ENST00000545856 RPL39P62891 51 aaKnown RBP10.94□□□□□ -0.66
PRPF40A-212ENST00000545856 Q6ZN92 141 aa10.94□□□□□ -0.66
PRPF40A-212ENST00000545856 TMEM262E9PQX1 116 aa10.93□□□□□ -0.66
PRPF40A-212ENST00000545856 CCL25O15444 150 aa10.93□□□□□ -0.66
PRPF40A-212ENST00000545856 NUPR1O60356 82 aa10.93□□□□□ -0.66
PRPF40A-212ENST00000545856 RBX1P62877 108 aa10.93□□□□□ -0.66
PRPF40A-212ENST00000545856 GAGE6Q13070 117 aa10.93□□□□□ -0.66
PRPF40A-212ENST00000545856 TTC32Q5I0X7 151 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms