RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 C10orf91Q5T1B1 145 aa9.69□□□□□ -0.86
CLSTN3-216ENST00000545663 SMIM15Q7Z3B0 74 aa9.69□□□□□ -0.86
CLSTN3-216ENST00000545663 UBE2WQ96B02 151 aa9.69□□□□□ -0.86
CLSTN3-216ENST00000545663 AP1S3Q96PC3 154 aa9.69□□□□□ -0.86
CLSTN3-216ENST00000545663 CTDSP1Q9GZU7 261 aa9.69□□□□□ -0.86
CLSTN3-216ENST00000545663 NAT8BQ9UHF3 227 aa9.69□□□□□ -0.86
CLSTN3-216ENST00000545663 V9GYV3 84 aa9.69□□□□□ -0.86
CLSTN3-216ENST00000545663 SMIM17P0DL12 118 aa9.68□□□□□ -0.86
CLSTN3-216ENST00000545663 C14orf177Q52M58 125 aa9.68□□□□□ -0.86
CLSTN3-216ENST00000545663 DMRTA1Q5VZB9 504 aa9.68□□□□□ -0.86
CLSTN3-216ENST00000545663 DPH3Q96FX2 82 aa9.68□□□□□ -0.86
CLSTN3-216ENST00000545663 PRADC1Q9BSG0 188 aa9.68□□□□□ -0.86
CLSTN3-216ENST00000545663 A0A087WYN8 130 aa9.67□□□□□ -0.86
CLSTN3-216ENST00000545663 A0A1B0GW15 77 aa9.67□□□□□ -0.86
CLSTN3-216ENST00000545663 HIGD1CA8MV81 97 aa9.67□□□□□ -0.86
CLSTN3-216ENST00000545663 USP17L23D6RBM5 183 aa9.67□□□□□ -0.86
CLSTN3-216ENST00000545663 GZMBP10144 247 aa9.67□□□□□ -0.86
CLSTN3-216ENST00000545663 CIRBPQ14011 172 aaKnown RBP9.67□□□□□ -0.86
CLSTN3-216ENST00000545663 CFAP126Q5VTH2 177 aa9.67□□□□□ -0.86
CLSTN3-216ENST00000545663 LYZL1Q6UWQ5 148 aa9.67□□□□□ -0.86
CLSTN3-216ENST00000545663 OR10AG1Q8NH19 301 aa9.67□□□□□ -0.86
CLSTN3-216ENST00000545663 A0A1B0GUT8 65 aa9.66□□□□□ -0.86
CLSTN3-216ENST00000545663 SMIM27A0A1W2PRY6 76 aa9.66□□□□□ -0.86
CLSTN3-216ENST00000545663 S100A8P05109 93 aa9.66□□□□□ -0.86
CLSTN3-216ENST00000545663 CHTF8P0CG12 524 aa9.66□□□□□ -0.86
CLSTN3-216ENST00000545663 ADCYAP1P18509 176 aa9.66□□□□□ -0.86
CLSTN3-216ENST00000545663 RIGQ13278 110 aa9.66□□□□□ -0.86
CLSTN3-216ENST00000545663 RHEBQ15382 184 aa9.66□□□□□ -0.86
CLSTN3-216ENST00000545663 RHOHQ15669 191 aa9.66□□□□□ -0.86
CLSTN3-216ENST00000545663 SVBPQ8N300 66 aa9.66□□□□□ -0.86
CLSTN3-216ENST00000545663 GTSF1Q8WW33 167 aa9.66□□□□□ -0.86
CLSTN3-216ENST00000545663 IMMP2LQ96T52 175 aa9.66□□□□□ -0.86
CLSTN3-216ENST00000545663 TMEM242Q9NWH2 141 aa9.66□□□□□ -0.86
CLSTN3-216ENST00000545663 TRBV6-4A0A1B0GX49 114 aa9.65□□□□□ -0.86
CLSTN3-216ENST00000545663 SNAPINO95295 136 aa9.65□□□□□ -0.86
CLSTN3-216ENST00000545663 DGAT2L7PQ6IED9 249 aa9.65□□□□□ -0.86
CLSTN3-216ENST00000545663 ATRAIDQ6UW56 229 aa9.65□□□□□ -0.86
CLSTN3-216ENST00000545663 NIT1Q86X76 327 aa9.65□□□□□ -0.86
CLSTN3-216ENST00000545663 A0A087WWC5 75 aa9.64□□□□□ -0.87
CLSTN3-216ENST00000545663 NTF3P20783 257 aa9.64□□□□□ -0.87
CLSTN3-216ENST00000545663 TWIST1Q15672 202 aa9.64□□□□□ -0.87
CLSTN3-216ENST00000545663 PGLYRP4Q96LB8 373 aa9.64□□□□□ -0.87
CLSTN3-216ENST00000545663 Q9UF83 564 aa9.64□□□□□ -0.87
CLSTN3-216ENST00000545663 H7C1H1 209 aa9.63□□□□□ -0.87
CLSTN3-216ENST00000545663 RAB4BP61018 213 aa9.63□□□□□ -0.87
CLSTN3-216ENST00000545663 PRR3P79522 188 aaKnown RBP9.63□□□□□ -0.87
CLSTN3-216ENST00000545663 KCNIP4Q6PIL6 250 aa9.63□□□□□ -0.87
CLSTN3-216ENST00000545663 REG3GQ6UW15 175 aa9.63□□□□□ -0.87
CLSTN3-216ENST00000545663 NUP35Q8NFH5 326 aa9.63□□□□□ -0.87
CLSTN3-216ENST00000545663 TRAV9-1A0A075B6T8 112 aa9.62□□□□□ -0.87
CLSTN3-216ENST00000545663 GAGE12JA6NER3 117 aa9.62□□□□□ -0.87
CLSTN3-216ENST00000545663 APOC3P02656 99 aa9.62□□□□□ -0.87
CLSTN3-216ENST00000545663 S100PP25815 95 aa9.62□□□□□ -0.87
CLSTN3-216ENST00000545663 GAGE1Q13065 139 aa9.62□□□□□ -0.87
CLSTN3-216ENST00000545663 GAGE4Q13068 117 aa9.62□□□□□ -0.87
CLSTN3-216ENST00000545663 GAGE5Q13069 117 aa9.62□□□□□ -0.87
CLSTN3-216ENST00000545663 GAGE13Q4V321 117 aa9.62□□□□□ -0.87
CLSTN3-216ENST00000545663 FAM74A4Q5TZK3 123 aa9.62□□□□□ -0.87
CLSTN3-216ENST00000545663 ATP5L2Q7Z4Y8 100 aa9.62□□□□□ -0.87
CLSTN3-216ENST00000545663 CLRN3Q8NCR9 226 aa9.62□□□□□ -0.87
CLSTN3-216ENST00000545663 BTF3L4Q96K17 158 aa9.62□□□□□ -0.87
CLSTN3-216ENST00000545663 URGCP-MRPS24S4R325 110 aa9.62□□□□□ -0.87
CLSTN3-216ENST00000545663 TRBV10-1A0A0K0K1A3 114 aa9.61□□□□□ -0.87
CLSTN3-216ENST00000545663 UFSP1Q6NVU6 142 aa9.61□□□□□ -0.87
CLSTN3-216ENST00000545663 C14orf178Q8N769 122 aaPredicted RBP9.61□□□□□ -0.87
CLSTN3-216ENST00000545663 A0A087WWL8 130 aa9.6□□□□□ -0.87
CLSTN3-216ENST00000545663 MUC21A0A0G2JKD1 596 aa9.6□□□□□ -0.87
CLSTN3-216ENST00000545663 MUC21A0A140T8X8 626 aa9.6□□□□□ -0.87
CLSTN3-216ENST00000545663 C7orf77A4D0Y5 90 aa9.6□□□□□ -0.87
CLSTN3-216ENST00000545663 F5H697 171 aa9.6□□□□□ -0.87
CLSTN3-216ENST00000545663 SSTP61278 116 aa9.6□□□□□ -0.87
CLSTN3-216ENST00000545663 ZNF56Q15929 161 aa9.6□□□□□ -0.87
CLSTN3-216ENST00000545663 LCE2DQ5TA82 110 aaPredicted RBP9.6□□□□□ -0.87
CLSTN3-216ENST00000545663 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.6□□□□□ -0.87
CLSTN3-216ENST00000545663 C7orf33Q8WU49 177 aa9.6□□□□□ -0.87
CLSTN3-216ENST00000545663 TMEM191AQ9H0A3 160 aa9.6□□□□□ -0.87
CLSTN3-216ENST00000545663 HLA-DQA1P01909 254 aa9.59□□□□□ -0.87
CLSTN3-216ENST00000545663 LINC00694P0DN24 101 aa9.59□□□□□ -0.87
CLSTN3-216ENST00000545663 RASL11AQ6T310 242 aa9.59□□□□□ -0.87
CLSTN3-216ENST00000545663 SPINK6Q6UWN8 80 aa9.59□□□□□ -0.87
CLSTN3-216ENST00000545663 ENHOQ6UWT2 76 aa9.59□□□□□ -0.87
CLSTN3-216ENST00000545663 SLC7A5P1Q8MH63 180 aa9.59□□□□□ -0.87
CLSTN3-216ENST00000545663 C1orf43Q9BWL3 253 aa9.59□□□□□ -0.87
CLSTN3-216ENST00000545663 JPT2Q9H910 190 aa9.59□□□□□ -0.87
CLSTN3-216ENST00000545663 RPS10P5Q9NQ39 176 aa9.59□□□□□ -0.87
CLSTN3-216ENST00000545663 HBBP68871 147 aa9.58□□□□□ -0.88
CLSTN3-216ENST00000545663 SPACA4Q8TDM5 124 aa9.58□□□□□ -0.88
CLSTN3-216ENST00000545663 SAMD10Q9BYL1 202 aa9.58□□□□□ -0.88
CLSTN3-216ENST00000545663 PLAC8Q9NZF1 115 aa9.58□□□□□ -0.88
CLSTN3-216ENST00000545663 PPP1R17O96001 155 aa9.57□□□□□ -0.88
CLSTN3-216ENST00000545663 RPL36AP83881 106 aaKnown RBP9.57□□□□□ -0.88
CLSTN3-216ENST00000545663 COX19Q49B96 90 aa9.57□□□□□ -0.88
CLSTN3-216ENST00000545663 RPL36ALQ969Q0 106 aaKnown RBP9.57□□□□□ -0.88
CLSTN3-216ENST00000545663 RNF185Q96GF1 192 aa9.57□□□□□ -0.88
CLSTN3-216ENST00000545663 MGPP08493 103 aa9.56□□□□□ -0.88
CLSTN3-216ENST00000545663 SRSF9Q13242 221 aaKnown RBP eCLIP9.56□□□□□ -0.88
CLSTN3-216ENST00000545663 TRBV7-3A0A075B6L6 115 aa9.55□□□□□ -0.88
CLSTN3-216ENST00000545663 A0A087WX48 190 aa9.55□□□□□ -0.88
CLSTN3-216ENST00000545663 MRAP2Q96G30 205 aa9.55□□□□□ -0.88
CLSTN3-216ENST00000545663 A0A1B0GXF2 115 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 89.9 ms