RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 Q1RN00 199 aa11.03□□□□□ -0.64
USP28-214ENST00000545540 TMEM61Q8N0U2 210 aa11.03□□□□□ -0.64
USP28-214ENST00000545540 POM121L12Q8N7R1 296 aa11.03□□□□□ -0.64
USP28-214ENST00000545540 FHL3Q13643 280 aa11.02□□□□□ -0.64
USP28-214ENST00000545540 TIMM17AQ99595 171 aa11.02□□□□□ -0.64
USP28-214ENST00000545540 CFAP126Q5VTH2 177 aa11.02□□□□□ -0.65
USP28-214ENST00000545540 SLC25A29Q8N8R3 303 aa11.02□□□□□ -0.65
USP28-214ENST00000545540 LINC01356Q8N9X3 169 aa11.02□□□□□ -0.65
USP28-214ENST00000545540 TMEM141Q96I45 108 aa11.02□□□□□ -0.65
USP28-214ENST00000545540 UBE2E2Q96LR5 201 aa11.02□□□□□ -0.65
USP28-214ENST00000545540 HIVEP2P31629 2446 aa11.02□□□□□ -0.65
USP28-214ENST00000545540 I3L3M4 83 aa11.02□□□□□ -0.65
USP28-214ENST00000545540 C10orf126Q8N4M7 172 aa11.02□□□□□ -0.65
USP28-214ENST00000545540 GCN1Q92616 2671 aaKnown RBP11.02□□□□□ -0.65
USP28-214ENST00000545540 ITPR2Q14571 2701 aa11.01□□□□□ -0.65
USP28-214ENST00000545540 XCL2Q9UBD3 114 aa11.01□□□□□ -0.65
USP28-214ENST00000545540 RHODO00212 210 aa11□□□□□ -0.65
USP28-214ENST00000545540 IGHV3-53P01767 116 aa11□□□□□ -0.65
USP28-214ENST00000545540 SPINK8P0C7L1 97 aa11□□□□□ -0.65
USP28-214ENST00000545540 ZNF625Q96I27 306 aaPredicted RBP11□□□□□ -0.65
USP28-214ENST00000545540 ZNF702PQ9H963 129 aa11□□□□□ -0.65
USP28-214ENST00000545540 FOXI1Q12951 378 aa11□□□□□ -0.65
USP28-214ENST00000545540 TRBV7-9A0A0J9YWB2 115 aa11□□□□□ -0.65
USP28-214ENST00000545540 BRI3O95415 125 aa11□□□□□ -0.65
USP28-214ENST00000545540 LINC01587Q99440 93 aa11□□□□□ -0.65
USP28-214ENST00000545540 TMEM223A0PJW6 202 aa10.99□□□□□ -0.65
USP28-214ENST00000545540 J3QR89 54 aa10.99□□□□□ -0.65
USP28-214ENST00000545540 PRO1854Q9UHT4 67 aa10.99□□□□□ -0.65
USP28-214ENST00000545540 TNFRSF18Q9Y5U5 241 aa10.99□□□□□ -0.65
USP28-214ENST00000545540 NDUFA7O95182 113 aa10.99□□□□□ -0.65
USP28-214ENST00000545540 VPREB3Q9UKI3 123 aa10.99□□□□□ -0.65
USP28-214ENST00000545540 CARD19Q96LW7 228 aa10.99□□□□□ -0.65
USP28-214ENST00000545540 IGHV3-30-3P0DP02 117 aa10.98□□□□□ -0.65
USP28-214ENST00000545540 FAM104AQ969W3 186 aa10.98□□□□□ -0.65
USP28-214ENST00000545540 TRBV6-5A0A0K0K1A5 114 aa10.98□□□□□ -0.65
USP28-214ENST00000545540 C9JAW5 83 aa10.98□□□□□ -0.65
USP28-214ENST00000545540 PAPPA-AS1Q5QFB9 102 aa10.98□□□□□ -0.65
USP28-214ENST00000545540 ADAMTSL4-AS1Q5T5F5 129 aa10.98□□□□□ -0.65
USP28-214ENST00000545540 MT-ATP8P03928 68 aa10.97□□□□□ -0.65
USP28-214ENST00000545540 UBE2D3P61077 147 aa10.97□□□□□ -0.65
USP28-214ENST00000545540 UBE2D2P62837 147 aa10.97□□□□□ -0.65
USP28-214ENST00000545540 HIST2H2BCQ6DN03 193 aa10.97□□□□□ -0.65
USP28-214ENST00000545540 H3BMM0 161 aa10.96□□□□□ -0.65
USP28-214ENST00000545540 C1QTNF4Q9BXJ3 329 aa10.96□□□□□ -0.65
USP28-214ENST00000545540 LINC01619G3V211 115 aa10.96□□□□□ -0.66
USP28-214ENST00000545540 NSUN5P1Q3KNT7 163 aa10.96□□□□□ -0.66
USP28-214ENST00000545540 Q6ZUT4 128 aa10.96□□□□□ -0.66
USP28-214ENST00000545540 BBC3Q96PG8 261 aaPredicted RBP10.96□□□□□ -0.66
USP28-214ENST00000545540 LINC00467Q9BRT7 94 aa10.96□□□□□ -0.66
USP28-214ENST00000545540 ANKRD29Q8N6D5 301 aa10.95□□□□□ -0.66
USP28-214ENST00000545540 TIMM21Q9BVV7 248 aa10.95□□□□□ -0.66
USP28-214ENST00000545540 A0A0J9YXY3 114 aa10.95□□□□□ -0.66
USP28-214ENST00000545540 LEPROTO15243 131 aa10.94□□□□□ -0.66
USP28-214ENST00000545540 UBR5O95071 2799 aaPredicted RBP10.94□□□□□ -0.66
USP28-214ENST00000545540 TRGV11A0A075B6L2 103 aa10.94□□□□□ -0.66
USP28-214ENST00000545540 RPL32P62910 135 aaKnown RBP10.94□□□□□ -0.66
USP28-214ENST00000545540 DYNLRB2Q8TF09 96 aa10.94□□□□□ -0.66
USP28-214ENST00000545540 A0A096LNT2 108 aa10.93□□□□□ -0.66
USP28-214ENST00000545540 CDIP1Q9H305 208 aa10.93□□□□□ -0.66
USP28-214ENST00000545540 ERG28Q9UKR5 140 aa10.93□□□□□ -0.66
USP28-214ENST00000545540 IGHV3-33P01772 117 aa10.93□□□□□ -0.66
USP28-214ENST00000545540 PLA2G2AP14555 144 aa10.93□□□□□ -0.66
USP28-214ENST00000545540 RHOHQ15669 191 aa10.93□□□□□ -0.66
USP28-214ENST00000545540 XGP55808 180 aa10.93□□□□□ -0.66
USP28-214ENST00000545540 Q6YL49 198 aa10.93□□□□□ -0.66
USP28-214ENST00000545540 IGHV4-31P0DP07 118 aa10.92□□□□□ -0.66
USP28-214ENST00000545540 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.92□□□□□ -0.66
USP28-214ENST00000545540 NDUFA12Q9UI09 145 aa10.92□□□□□ -0.66
USP28-214ENST00000545540 A8MWV9 139 aa10.92□□□□□ -0.66
USP28-214ENST00000545540 TMEM263Q8WUH6 116 aaKnown RBP10.91□□□□□ -0.66
USP28-214ENST00000545540 SPATA25Q9BR10 227 aa10.91□□□□□ -0.66
USP28-214ENST00000545540 MAP6D1Q9H9H5 199 aa10.91□□□□□ -0.66
USP28-214ENST00000545540 CDKN2A-AS1Q9UH64 79 aa10.91□□□□□ -0.66
USP28-214ENST00000545540 Q96MF0 132 aa10.91□□□□□ -0.66
USP28-214ENST00000545540 WFDC10AQ9H1F0 79 aa10.91□□□□□ -0.66
USP28-214ENST00000545540 TENM4Q6N022 2769 aa10.9□□□□□ -0.66
USP28-214ENST00000545540 CR1P17927 2039 aa10.9□□□□□ -0.66
USP28-214ENST00000545540 SLC25A20O43772 301 aa10.9□□□□□ -0.66
USP28-214ENST00000545540 TRGV1A0A0A0MS02 117 aa10.9□□□□□ -0.66
USP28-214ENST00000545540 M0R2P5 195 aa10.9□□□□□ -0.66
USP28-214ENST00000545540 GATA3P23771 443 aa10.9□□□□□ -0.66
USP28-214ENST00000545540 COX6A2Q02221 97 aa10.9□□□□□ -0.66
USP28-214ENST00000545540 Q5PR19 223 aa10.9□□□□□ -0.66
USP28-214ENST00000545540 CLEC2BQ92478 149 aa10.9□□□□□ -0.66
USP28-214ENST00000545540 CHCHD7Q9BUK0 85 aa10.9□□□□□ -0.66
USP28-214ENST00000545540 TRAV13-1A0A0B4J241 112 aa10.9□□□□□ -0.67
USP28-214ENST00000545540 IGKV3OR2-268A0A0C4DH90 116 aa10.9□□□□□ -0.67
USP28-214ENST00000545540 DGAT2L7PQ6IED9 249 aa10.9□□□□□ -0.67
USP28-214ENST00000545540 ODF3Q96PU9 254 aa10.9□□□□□ -0.67
USP28-214ENST00000545540 LINC00694P0DN24 101 aa10.89□□□□□ -0.67
USP28-214ENST00000545540 TEN1Q86WV5 123 aa10.89□□□□□ -0.67
USP28-214ENST00000545540 GEMIN7Q9H840 131 aaKnown RBP10.89□□□□□ -0.67
USP28-214ENST00000545540 VWFP04275 2813 aa10.89□□□□□ -0.67
USP28-214ENST00000545540 TRIAP1O43715 76 aa10.89□□□□□ -0.67
USP28-214ENST00000545540 NTN5Q8WTR8 489 aaPredicted RBP10.89□□□□□ -0.67
USP28-214ENST00000545540 TEX49A0A1B0GTD5 131 aa10.88□□□□□ -0.67
USP28-214ENST00000545540 UBE2D4Q9Y2X8 147 aa10.88□□□□□ -0.67
USP28-214ENST00000545540 TMEM89A2RUT3 159 aa10.87□□□□□ -0.67
USP28-214ENST00000545540 LITAFQ99732 161 aa10.87□□□□□ -0.67
USP28-214ENST00000545540 CKS1BP61024 79 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 141.3 ms