RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 PRO0255Q9UI72 69 aa5.9□□□□□ -1.46
VPS13D-211ENST00000543710 IGHV4OR15-8A0A075B7B6 117 aa5.9□□□□□ -1.46
VPS13D-211ENST00000543710 A0A087WW49 117 aa5.9□□□□□ -1.46
VPS13D-211ENST00000543710 UPK3BQ9BT76 320 aa5.9□□□□□ -1.46
VPS13D-211ENST00000543710 PKDREJQ9NTG1 2253 aa5.9□□□□□ -1.46
VPS13D-211ENST00000543710 SONP18583 2426 aaKnown RBP5.9□□□□□ -1.46
VPS13D-211ENST00000543710 LRCOL1A6NCL2 159 aa5.9□□□□□ -1.46
VPS13D-211ENST00000543710 XCL1P47992 114 aa5.9□□□□□ -1.46
VPS13D-211ENST00000543710 LINC00322Q6ZN03 302 aaPredicted RBP5.9□□□□□ -1.46
VPS13D-211ENST00000543710 MAP6D1Q9H9H5 199 aa5.9□□□□□ -1.46
VPS13D-211ENST00000543710 NAV3Q8IVL0 2385 aa5.9□□□□□ -1.47
VPS13D-211ENST00000543710 FAM236AA0A1B0GUQ0 79 aa5.9□□□□□ -1.47
VPS13D-211ENST00000543710 FAM236BA0A1B0GV22 79 aa5.9□□□□□ -1.47
VPS13D-211ENST00000543710 FXYD2P54710 66 aa5.9□□□□□ -1.47
VPS13D-211ENST00000543710 A6NED7 52 aa5.9□□□□□ -1.47
VPS13D-211ENST00000543710 CRIP2P52943 208 aaPredicted RBP5.9□□□□□ -1.47
VPS13D-211ENST00000543710 CDPF1Q6NVV7 123 aa5.89□□□□□ -1.47
VPS13D-211ENST00000543710 NXPH4O95158 308 aa5.88□□□□□ -1.47
VPS13D-211ENST00000543710 IGHV3-30-3P0DP02 117 aa5.88□□□□□ -1.47
VPS13D-211ENST00000543710 LMO4P61968 165 aa5.88□□□□□ -1.47
VPS13D-211ENST00000543710 COX8CQ7Z4L0 72 aa5.88□□□□□ -1.47
VPS13D-211ENST00000543710 ADAMTS9Q9P2N4 1935 aa5.88□□□□□ -1.47
VPS13D-211ENST00000543710 A0A1W2PNU3 283 aaPredicted RBP5.88□□□□□ -1.47
VPS13D-211ENST00000543710 NDUFV3P56181 108 aaKnown RBP5.88□□□□□ -1.47
VPS13D-211ENST00000543710 Q6JHZ5 121 aa5.88□□□□□ -1.47
VPS13D-211ENST00000543710 DAND5Q8N907 189 aa5.88□□□□□ -1.47
VPS13D-211ENST00000543710 CNFNQ9BYD5 112 aa5.88□□□□□ -1.47
VPS13D-211ENST00000543710 FAM236DA0A1B0GTK5 79 aa5.88□□□□□ -1.47
VPS13D-211ENST00000543710 TCL1BO95988 128 aa5.88□□□□□ -1.47
VPS13D-211ENST00000543710 FAM236CP0DP71 79 aa5.88□□□□□ -1.47
VPS13D-211ENST00000543710 LINC00474Q9P2X8 69 aa5.88□□□□□ -1.47
VPS13D-211ENST00000543710 A0A0J9YXV3 536 aa5.88□□□□□ -1.47
VPS13D-211ENST00000543710 SPAG11BQ08648 103 aa5.88□□□□□ -1.47
VPS13D-211ENST00000543710 C1orf195Q5TG92 126 aa5.88□□□□□ -1.47
VPS13D-211ENST00000543710 IGLV2-18A0A075B6J9 118 aa5.87□□□□□ -1.47
VPS13D-211ENST00000543710 WFDC9Q8NEX5 89 aa5.87□□□□□ -1.47
VPS13D-211ENST00000543710 MPLKIPQ8TAP9 179 aa5.87□□□□□ -1.47
VPS13D-211ENST00000543710 RITA1Q96K30 269 aa5.87□□□□□ -1.47
VPS13D-211ENST00000543710 PKD1L2Q7Z442 2459 aa5.87□□□□□ -1.47
VPS13D-211ENST00000543710 BLCAPP62952 87 aa5.87□□□□□ -1.47
VPS13D-211ENST00000543710 TNRC6BQ9UPQ9 1833 aaKnown RBP5.87□□□□□ -1.47
VPS13D-211ENST00000543710 LINC01546A6NGU7 62 aa5.87□□□□□ -1.47
VPS13D-211ENST00000543710 NUPR1O60356 82 aa5.87□□□□□ -1.47
VPS13D-211ENST00000543710 Q8N6K4 173 aa5.87□□□□□ -1.47
VPS13D-211ENST00000543710 C16orf95Q9H693 158 aa5.87□□□□□ -1.47
VPS13D-211ENST00000543710 ABCA2Q9BZC7 2435 aa5.86□□□□□ -1.47
VPS13D-211ENST00000543710 TRBV27A0A0K0K1C4 114 aa5.86□□□□□ -1.47
VPS13D-211ENST00000543710 K7EQG2 157 aa5.86□□□□□ -1.47
VPS13D-211ENST00000543710 NCR3O14931 201 aa5.86□□□□□ -1.47
VPS13D-211ENST00000543710 NDUFS5O43920 106 aa5.86□□□□□ -1.47
VPS13D-211ENST00000543710 IGHV3-30P01768 117 aa5.86□□□□□ -1.47
VPS13D-211ENST00000543710 IGHV3-33P01772 117 aa5.86□□□□□ -1.47
VPS13D-211ENST00000543710 CRYGDP07320 174 aa5.86□□□□□ -1.47
VPS13D-211ENST00000543710 IGHV3-30-5P0DP03 117 aa5.86□□□□□ -1.47
VPS13D-211ENST00000543710 Q8N976 141 aa5.86□□□□□ -1.47
VPS13D-211ENST00000543710 CHCHD7Q9BUK0 85 aa5.86□□□□□ -1.47
VPS13D-211ENST00000543710 PLCE1Q9P212 2302 aa5.86□□□□□ -1.47
VPS13D-211ENST00000543710 TRAV23DV6A0A075B6W5 121 aa5.86□□□□□ -1.47
VPS13D-211ENST00000543710 IGLV5-52A0A0A0MRZ9 124 aa5.86□□□□□ -1.47
VPS13D-211ENST00000543710 KRTAP10-9P60411 292 aa5.86□□□□□ -1.47
VPS13D-211ENST00000543710 ZNF295-AS1Q8N0V1 137 aa5.86□□□□□ -1.47
VPS13D-211ENST00000543710 C11orf71Q6IPW1 123 aa5.85□□□□□ -1.47
VPS13D-211ENST00000543710 ZFAND3Q9H8U3 227 aa5.85□□□□□ -1.47
VPS13D-211ENST00000543710 MYOFQ9NZM1 2061 aa5.85□□□□□ -1.47
VPS13D-211ENST00000543710 B5MCH6 92 aa5.85□□□□□ -1.47
VPS13D-211ENST00000543710 RNF185Q96GF1 192 aa5.85□□□□□ -1.47
VPS13D-211ENST00000543710 FAM110AQ9BQ89 295 aa5.85□□□□□ -1.47
VPS13D-211ENST00000543710 PLXND1Q9Y4D7 1925 aa5.85□□□□□ -1.47
VPS13D-211ENST00000543710 NANOS2P60321 138 aaKnown RBP5.85□□□□□ -1.47
VPS13D-211ENST00000543710 ZNF462Q96JM2 2506 aa5.85□□□□□ -1.47
VPS13D-211ENST00000543710 A0A096LPF7 62 aa5.85□□□□□ -1.47
VPS13D-211ENST00000543710 AMTNQ6UX39 209 aa5.85□□□□□ -1.47
VPS13D-211ENST00000543710 C9orf85Q96MD7 179 aa5.85□□□□□ -1.47
VPS13D-211ENST00000543710 ZGRF1Q86YA3 2104 aa5.85□□□□□ -1.47
VPS13D-211ENST00000543710 C10orf142B7Z368 130 aa5.84□□□□□ -1.47
VPS13D-211ENST00000543710 SPRNQ5BIV9 151 aa5.84□□□□□ -1.47
VPS13D-211ENST00000543710 LECT2O14960 151 aa5.84□□□□□ -1.47
VPS13D-211ENST00000543710 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.84□□□□□ -1.47
VPS13D-211ENST00000543710 SEM1Q6ZVN7 128 aa5.84□□□□□ -1.47
VPS13D-211ENST00000543710 SELENOKQ9Y6D0 94 aa5.84□□□□□ -1.47
VPS13D-211ENST00000543710 Q6ZQT7 251 aa5.84□□□□□ -1.47
VPS13D-211ENST00000543710 LINC00173Q6ZV60 143 aa5.84□□□□□ -1.47
VPS13D-211ENST00000543710 MIR7-3HGQ8N6C7 128 aa5.84□□□□□ -1.47
VPS13D-211ENST00000543710 LINC00337Q8N6G1 96 aa5.84□□□□□ -1.47
VPS13D-211ENST00000543710 M0R378 163 aa5.84□□□□□ -1.48
VPS13D-211ENST00000543710 GATA1P15976 413 aaPredicted RBP5.84□□□□□ -1.48
VPS13D-211ENST00000543710 CRIP3Q6Q6R5 217 aa5.84□□□□□ -1.48
VPS13D-211ENST00000543710 HEATR5BQ9P2D3 2071 aa5.84□□□□□ -1.48
VPS13D-211ENST00000543710 IGLV4-3A0A075B6K6 122 aa5.83□□□□□ -1.48
VPS13D-211ENST00000543710 PRAC2D3DTV9 90 aa5.83□□□□□ -1.48
VPS13D-211ENST00000543710 BCE1O60756 84 aa5.83□□□□□ -1.48
VPS13D-211ENST00000543710 ZNF22P17026 224 aaPredicted RBP5.83□□□□□ -1.48
VPS13D-211ENST00000543710 LINC00308Q8TCZ7 52 aa5.83□□□□□ -1.48
VPS13D-211ENST00000543710 LRRK1Q38SD2 2015 aa5.83□□□□□ -1.48
VPS13D-211ENST00000543710 C16orf90A8MZG2 172 aa5.83□□□□□ -1.48
VPS13D-211ENST00000543710 KRTAP24-1Q3LI83 254 aa5.83□□□□□ -1.48
VPS13D-211ENST00000543710 CFAP126Q5VTH2 177 aa5.83□□□□□ -1.48
VPS13D-211ENST00000543710 FER1L5A0AVI2 2057 aa5.83□□□□□ -1.48
VPS13D-211ENST00000543710 BPY2O14599 106 aa5.83□□□□□ -1.48
VPS13D-211ENST00000543710 LINC00336Q6ZUF6 198 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms