RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 MTORP42345 2549 aa7.91□□□□□ -1.14
CLIP1-213ENST00000540338 IGIPA6NJ69 53 aa7.91□□□□□ -1.14
CLIP1-213ENST00000540338 K7EP13 123 aa7.91□□□□□ -1.14
CLIP1-213ENST00000540338 TMEM263Q8WUH6 116 aaKnown RBP7.91□□□□□ -1.14
CLIP1-213ENST00000540338 TSHBP01222 138 aa7.91□□□□□ -1.14
CLIP1-213ENST00000540338 IGLL5B9A064 214 aa7.9□□□□□ -1.14
CLIP1-213ENST00000540338 PIK3CD-AS1Q5SR53 167 aa7.9□□□□□ -1.14
CLIP1-213ENST00000540338 NDUFA12Q9UI09 145 aa7.9□□□□□ -1.14
CLIP1-213ENST00000540338 TRBV7-3A0A075B6L6 115 aa7.9□□□□□ -1.14
CLIP1-213ENST00000540338 ODF3L2Q3SX64 289 aa7.9□□□□□ -1.14
CLIP1-213ENST00000540338 AGRNO00468 2067 aa7.9□□□□□ -1.14
CLIP1-213ENST00000540338 TMEM243Q9BU79 118 aa7.9□□□□□ -1.15
CLIP1-213ENST00000540338 K7EQD1 137 aa7.89□□□□□ -1.15
CLIP1-213ENST00000540338 ACANP16112 2415 aa7.89□□□□□ -1.15
CLIP1-213ENST00000540338 TOMM7Q9P0U1 55 aa7.89□□□□□ -1.15
CLIP1-213ENST00000540338 MAP1AP78559 2803 aaPredicted RBP7.89□□□□□ -1.15
CLIP1-213ENST00000540338 IGLV4-3A0A075B6K6 122 aa7.89□□□□□ -1.15
CLIP1-213ENST00000540338 HILS1P60008 231 aa7.89□□□□□ -1.15
CLIP1-213ENST00000540338 CEMP1Q6PRD7 247 aaPredicted RBP7.89□□□□□ -1.15
CLIP1-213ENST00000540338 TACC2O95359 2948 aa7.89□□□□□ -1.15
CLIP1-213ENST00000540338 DAZ2Q13117 558 aaKnown RBP7.89□□□□□ -1.15
CLIP1-213ENST00000540338 DAZ4Q86SG3 579 aaKnown RBP7.89□□□□□ -1.15
CLIP1-213ENST00000540338 DAZ3Q9NR90 486 aaKnown RBP7.89□□□□□ -1.15
CLIP1-213ENST00000540338 ZFHX4Q86UP3 3567 aa7.88□□□□□ -1.15
CLIP1-213ENST00000540338 USP24Q9UPU5 2620 aa7.88□□□□□ -1.15
CLIP1-213ENST00000540338 POM121L12Q8N7R1 296 aa7.88□□□□□ -1.15
CLIP1-213ENST00000540338 TRBV10-1A0A0K0K1A3 114 aa7.88□□□□□ -1.15
CLIP1-213ENST00000540338 RS1O15537 224 aa7.88□□□□□ -1.15
CLIP1-213ENST00000540338 SPINK8P0C7L1 97 aa7.88□□□□□ -1.15
CLIP1-213ENST00000540338 Q6ZTI0 123 aa7.88□□□□□ -1.15
CLIP1-213ENST00000540338 A0A0U1RRA0 63 aa7.88□□□□□ -1.15
CLIP1-213ENST00000540338 ESM1Q9NQ30 184 aa7.88□□□□□ -1.15
CLIP1-213ENST00000540338 KALRNO60229 2985 aa7.88□□□□□ -1.15
CLIP1-213ENST00000540338 HERVK_113P63121 156 aa7.87□□□□□ -1.15
CLIP1-213ENST00000540338 PRO1854Q9UHT4 67 aa7.87□□□□□ -1.15
CLIP1-213ENST00000540338 RBMY1BA6NDE4 496 aaKnown RBP7.87□□□□□ -1.15
CLIP1-213ENST00000540338 RBMY1EA6NEQ0 496 aaKnown RBP7.87□□□□□ -1.15
CLIP1-213ENST00000540338 RBMY1DP0C7P1 496 aaKnown RBP7.87□□□□□ -1.15
CLIP1-213ENST00000540338 PYGO1Q9Y3Y4 419 aa7.87□□□□□ -1.15
CLIP1-213ENST00000540338 TRAV4A0A0B4J268 109 aa7.87□□□□□ -1.15
CLIP1-213ENST00000540338 PCP4P48539 62 aa7.87□□□□□ -1.15
CLIP1-213ENST00000540338 CRYBA4P53673 196 aa7.87□□□□□ -1.15
CLIP1-213ENST00000540338 NPC2P61916 151 aa7.87□□□□□ -1.15
CLIP1-213ENST00000540338 H3BMG7 143 aa7.86□□□□□ -1.15
CLIP1-213ENST00000540338 NDUFA11Q86Y39 141 aa7.86□□□□□ -1.15
CLIP1-213ENST00000540338 F8W1H4 67 aa7.86□□□□□ -1.15
CLIP1-213ENST00000540338 RBMY1A1P0DJD3 496 aaKnown RBP7.86□□□□□ -1.15
CLIP1-213ENST00000540338 RBMY1CP0DJD4 496 aa7.86□□□□□ -1.15
CLIP1-213ENST00000540338 RBMY1FQ15415 496 aaKnown RBP7.86□□□□□ -1.15
CLIP1-213ENST00000540338 C16orf95Q9H693 158 aa7.86□□□□□ -1.15
CLIP1-213ENST00000540338 ZZEF1O43149 2961 aa7.86□□□□□ -1.15
CLIP1-213ENST00000540338 ZNF22P17026 224 aaPredicted RBP7.86□□□□□ -1.15
CLIP1-213ENST00000540338 CIDEAO60543 219 aa7.85□□□□□ -1.15
CLIP1-213ENST00000540338 NFE4Q86UQ8 179 aa7.85□□□□□ -1.15
CLIP1-213ENST00000540338 PRIMA1Q86XR5 153 aa7.85□□□□□ -1.15
CLIP1-213ENST00000540338 RNASE8Q8TDE3 154 aaKnown RBP7.85□□□□□ -1.15
CLIP1-213ENST00000540338 FLNCQ14315 2725 aa7.85□□□□□ -1.15
CLIP1-213ENST00000540338 GAGE6Q13070 117 aa7.85□□□□□ -1.15
CLIP1-213ENST00000540338 C9orf66Q5T8R8 295 aa7.85□□□□□ -1.15
CLIP1-213ENST00000540338 LINC00467Q9BRT7 94 aa7.85□□□□□ -1.15
CLIP1-213ENST00000540338 HTN3P15516 51 aa7.85□□□□□ -1.15
CLIP1-213ENST00000540338 Q6ZUT4 128 aa7.85□□□□□ -1.15
CLIP1-213ENST00000540338 TMEM223A0PJW6 202 aa7.85□□□□□ -1.15
CLIP1-213ENST00000540338 IGHV3-30-3P0DP02 117 aa7.85□□□□□ -1.15
CLIP1-213ENST00000540338 ZNF625Q96I27 306 aaPredicted RBP7.85□□□□□ -1.15
CLIP1-213ENST00000540338 A0A0J9YY99 117 aa7.84□□□□□ -1.15
CLIP1-213ENST00000540338 IGLV4-69A0A075B6H9 119 aa7.84□□□□□ -1.15
CLIP1-213ENST00000540338 TRBV20-1A0A075B6N2 111 aa7.84□□□□□ -1.15
CLIP1-213ENST00000540338 IGHV1-58A0A0C4DH39 117 aa7.84□□□□□ -1.15
CLIP1-213ENST00000540338 LY6G6DO95868 133 aa7.84□□□□□ -1.15
CLIP1-213ENST00000540338 NDUFA7O95182 113 aa7.84□□□□□ -1.15
CLIP1-213ENST00000540338 SLC25A29Q8N8R3 303 aa7.84□□□□□ -1.15
CLIP1-213ENST00000540338 COL12A1Q99715 3063 aa7.84□□□□□ -1.16
CLIP1-213ENST00000540338 TRAV8-3A0A0A6YYJ7 113 aa7.83□□□□□ -1.16
CLIP1-213ENST00000540338 C1orf158Q8N1D5 194 aa7.83□□□□□ -1.16
CLIP1-213ENST00000540338 CLUHP3Q96NS8 147 aa7.83□□□□□ -1.16
CLIP1-213ENST00000540338 HRNRQ86YZ3 2850 aaPredicted RBP7.83□□□□□ -1.16
CLIP1-213ENST00000540338 TINCRA0A1B0GVN0 87 aa7.83□□□□□ -1.16
CLIP1-213ENST00000540338 A4D1N5 150 aa7.83□□□□□ -1.16
CLIP1-213ENST00000540338 APOC4P55056 127 aa7.83□□□□□ -1.16
CLIP1-213ENST00000540338 PTH2Q96A98 100 aa7.83□□□□□ -1.16
CLIP1-213ENST00000540338 WFDC10AQ9H1F0 79 aa7.83□□□□□ -1.16
CLIP1-213ENST00000540338 DCHS1Q96JQ0 3298 aa7.83□□□□□ -1.16
CLIP1-213ENST00000540338 INSL3P51460 131 aa7.83□□□□□ -1.16
CLIP1-213ENST00000540338 MUSTN1Q8IVN3 82 aa7.83□□□□□ -1.16
CLIP1-213ENST00000540338 MTURNQ8N3F0 131 aa7.83□□□□□ -1.16
CLIP1-213ENST00000540338 SMR3AQ99954 134 aa7.83□□□□□ -1.16
CLIP1-213ENST00000540338 ETDBQ3ZM63 59 aa7.83□□□□□ -1.16
CLIP1-213ENST00000540338 IGLV1-51P01701 117 aa7.82□□□□□ -1.16
CLIP1-213ENST00000540338 BEAN1Q3B7T3 259 aa7.82□□□□□ -1.16
CLIP1-213ENST00000540338 FN1P02751 2386 aaKnown RBP7.82□□□□□ -1.16
CLIP1-213ENST00000540338 RPL13AP40429 203 aaKnown RBP7.82□□□□□ -1.16
CLIP1-213ENST00000540338 FHL3Q13643 280 aa7.82□□□□□ -1.16
CLIP1-213ENST00000540338 CRLF1O75462 422 aa7.82□□□□□ -1.16
CLIP1-213ENST00000540338 KRTAP1-3Q8IUG1 177 aa7.82□□□□□ -1.16
CLIP1-213ENST00000540338 VSIG2Q96IQ7 327 aa7.82□□□□□ -1.16
CLIP1-213ENST00000540338 SPANXB1Q9NS25 103 aaPredicted RBP7.82□□□□□ -1.16
CLIP1-213ENST00000540338 CFAP46Q8IYW2 2715 aa7.82□□□□□ -1.16
CLIP1-213ENST00000540338 INAFM1C9JVW0 142 aa7.81□□□□□ -1.16
CLIP1-213ENST00000540338 C10orf126Q8N4M7 172 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms