RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 E7EQL1 145 aa4.9□□□□□ -1.63
USP28-207ENST00000538475 K7EMT4 169 aa4.9□□□□□ -1.63
USP28-207ENST00000538475 GNRH2O43555 120 aa4.9□□□□□ -1.63
USP28-207ENST00000538475 MALP21145 153 aa4.9□□□□□ -1.63
USP28-207ENST00000538475 RPL28P46779 137 aaKnown RBP4.9□□□□□ -1.63
USP28-207ENST00000538475 ADAMTSL4-AS1Q5T5F5 129 aa4.9□□□□□ -1.63
USP28-207ENST00000538475 CLEC19AQ6UXS0 136 aa4.9□□□□□ -1.63
USP28-207ENST00000538475 Q6YL49 198 aa4.9□□□□□ -1.63
USP28-207ENST00000538475 KIR2DL5BQ8NHK3 375 aa4.9□□□□□ -1.63
USP28-207ENST00000538475 LINC00308Q8TCZ7 52 aa4.9□□□□□ -1.63
USP28-207ENST00000538475 USMG5Q96IX5 58 aa4.9□□□□□ -1.63
USP28-207ENST00000538475 ROS1P08922 2347 aa4.9□□□□□ -1.63
USP28-207ENST00000538475 RANBP2P49792 3224 aaKnown RBP4.89□□□□□ -1.63
USP28-207ENST00000538475 IGHV3OR16-10A0A075B7F0 116 aa4.89□□□□□ -1.63
USP28-207ENST00000538475 IGHV3-16A0A0C4DH30 117 aa4.89□□□□□ -1.63
USP28-207ENST00000538475 IGLV5-39A0A0G2JS06 123 aa4.89□□□□□ -1.63
USP28-207ENST00000538475 DNAL4O96015 105 aa4.89□□□□□ -1.63
USP28-207ENST00000538475 IGHV3-23P01764 117 aa4.89□□□□□ -1.63
USP28-207ENST00000538475 CD28P10747 220 aa4.89□□□□□ -1.63
USP28-207ENST00000538475 HIST2H2BCQ6DN03 193 aa4.89□□□□□ -1.63
USP28-207ENST00000538475 HIST2H2BDQ6DRA6 164 aa4.89□□□□□ -1.63
USP28-207ENST00000538475 PRIMA1Q86XR5 153 aa4.89□□□□□ -1.63
USP28-207ENST00000538475 DUX5Q96PT3 197 aa4.89□□□□□ -1.63
USP28-207ENST00000538475 PRO0628Q9UI54 55 aa4.89□□□□□ -1.63
USP28-207ENST00000538475 CACNA1BQ00975 2339 aa4.88□□□□□ -1.63
USP28-207ENST00000538475 TRAV12-2A0A075B6T6 113 aa4.88□□□□□ -1.63
USP28-207ENST00000538475 F8WDY8 70 aa4.88□□□□□ -1.63
USP28-207ENST00000538475 SYNJ2BPP57105 145 aa4.88□□□□□ -1.63
USP28-207ENST00000538475 ATP1A1-AS1Q5TC04 95 aa4.88□□□□□ -1.63
USP28-207ENST00000538475 KLK5Q9Y337 293 aaPredicted RBP4.88□□□□□ -1.63
USP28-207ENST00000538475 SERP1Q9Y6X1 66 aa4.88□□□□□ -1.63
USP28-207ENST00000538475 USP17L23D6RBM5 183 aa4.87□□□□□ -1.63
USP28-207ENST00000538475 ATP6V0E1O15342 81 aa4.87□□□□□ -1.63
USP28-207ENST00000538475 PRB4P10163 310 aaPredicted RBP4.87□□□□□ -1.63
USP28-207ENST00000538475 ATP5EP56381 51 aaPredicted RBP4.87□□□□□ -1.63
USP28-207ENST00000538475 NPC2P61916 151 aa4.87□□□□□ -1.63
USP28-207ENST00000538475 Q5XG85 94 aa4.87□□□□□ -1.63
USP28-207ENST00000538475 FAM30AQ9NZY2 134 aa4.87□□□□□ -1.63
USP28-207ENST00000538475 ZNF580Q9UK33 172 aa4.87□□□□□ -1.63
USP28-207ENST00000538475 IGHV1OR15-1A0A075B7D0 117 aa4.86□□□□□ -1.63
USP28-207ENST00000538475 JMJD7-PLA2G4BH0Y9G9 81 aa4.86□□□□□ -1.63
USP28-207ENST00000538475 NDUFC1O43677 76 aa4.86□□□□□ -1.63
USP28-207ENST00000538475 IGHG2P01859 326 aa4.86□□□□□ -1.63
USP28-207ENST00000538475 IGF1P05019 195 aa4.86□□□□□ -1.63
USP28-207ENST00000538475 ECSCRQ19T08 205 aa4.86□□□□□ -1.63
USP28-207ENST00000538475 LYPD5Q6UWN5 251 aa4.86□□□□□ -1.63
USP28-207ENST00000538475 C3orf56Q8N813 242 aa4.86□□□□□ -1.63
USP28-207ENST00000538475 FAM104AQ969W3 186 aa4.86□□□□□ -1.63
USP28-207ENST00000538475 JPT2Q9H910 190 aa4.86□□□□□ -1.63
USP28-207ENST00000538475 C22orf24Q9Y442 160 aa4.86□□□□□ -1.63
USP28-207ENST00000538475 PCNX1Q96RV3 2341 aa4.86□□□□□ -1.63
USP28-207ENST00000538475 A0A087WWL8 130 aa4.85□□□□□ -1.63
USP28-207ENST00000538475 TRAV41A0A0B4J266 112 aa4.85□□□□□ -1.63
USP28-207ENST00000538475 IGHV3-66A0A0C4DH42 116 aa4.85□□□□□ -1.63
USP28-207ENST00000538475 KRTAP1-1Q07627 177 aa4.85□□□□□ -1.63
USP28-207ENST00000538475 LINC00476Q8WZB0 136 aa4.85□□□□□ -1.63
USP28-207ENST00000538475 OPRPNQ99935 248 aaPredicted RBP4.85□□□□□ -1.63
USP28-207ENST00000538475 SIRPDQ9H106 197 aa4.85□□□□□ -1.63
USP28-207ENST00000538475 UBE2D4Q9Y2X8 147 aa4.85□□□□□ -1.63
USP28-207ENST00000538475 MED13LQ71F56 2210 aa4.85□□□□□ -1.63
USP28-207ENST00000538475 CEP250Q9BV73 2442 aa4.85□□□□□ -1.63
USP28-207ENST00000538475 LAMA1P25391 3075 aa4.84□□□□□ -1.63
USP28-207ENST00000538475 CNOT1A5YKK6 2376 aaKnown RBP4.84□□□□□ -1.63
USP28-207ENST00000538475 IGHV3-64A0A075B6Q5 118 aa4.84□□□□□ -1.63
USP28-207ENST00000538475 SMIM26A0A096LP01 95 aa4.84□□□□□ -1.63
USP28-207ENST00000538475 IGHV3-35A0A0C4DH35 117 aa4.84□□□□□ -1.63
USP28-207ENST00000538475 H3BQ85 93 aa4.84□□□□□ -1.63
USP28-207ENST00000538475 SPRY2O43597 315 aa4.84□□□□□ -1.63
USP28-207ENST00000538475 CRPP02741 224 aa4.84□□□□□ -1.63
USP28-207ENST00000538475 KLRB1Q12918 225 aa4.84□□□□□ -1.63
USP28-207ENST00000538475 FBXL19-AS1Q494R0 122 aa4.84□□□□□ -1.63
USP28-207ENST00000538475 C5orf56Q8N8D9 126 aa4.84□□□□□ -1.63
USP28-207ENST00000538475 Q96MF0 132 aa4.84□□□□□ -1.63
USP28-207ENST00000538475 LINC00467Q9BRT7 94 aa4.84□□□□□ -1.63
USP28-207ENST00000538475 ARRDC1-AS1Q9H2J1 176 aa4.84□□□□□ -1.63
USP28-207ENST00000538475 MOB4Q9Y3A3 225 aa4.84□□□□□ -1.63
USP28-207ENST00000538475 TRAV7A0A075B6U4 112 aa4.83□□□□□ -1.64
USP28-207ENST00000538475 IGHV3OR16-8A0A075B7F1 116 aa4.83□□□□□ -1.64
USP28-207ENST00000538475 FAM236DA0A1B0GTK5 79 aa4.83□□□□□ -1.64
USP28-207ENST00000538475 RBMY1BA6NDE4 496 aaKnown RBP4.83□□□□□ -1.64
USP28-207ENST00000538475 RBMY1EA6NEQ0 496 aaKnown RBP4.83□□□□□ -1.64
USP28-207ENST00000538475 CCKP06307 115 aa4.83□□□□□ -1.64
USP28-207ENST00000538475 RBMY1DP0C7P1 496 aaKnown RBP4.83□□□□□ -1.64
USP28-207ENST00000538475 RBMY1A1P0DJD3 496 aaKnown RBP4.83□□□□□ -1.64
USP28-207ENST00000538475 RBMY1CP0DJD4 496 aa4.83□□□□□ -1.64
USP28-207ENST00000538475 FAM236CP0DP71 79 aa4.83□□□□□ -1.64
USP28-207ENST00000538475 SNRPD3P62318 126 aaKnown RBP4.83□□□□□ -1.64
USP28-207ENST00000538475 RBMY1FQ15415 496 aaKnown RBP4.83□□□□□ -1.64
USP28-207ENST00000538475 DEFB109BQ30KR1 87 aa4.83□□□□□ -1.64
USP28-207ENST00000538475 FAM74A4Q5TZK3 123 aa4.83□□□□□ -1.64
USP28-207ENST00000538475 LINC01561Q8N1V8 128 aa4.83□□□□□ -1.64
USP28-207ENST00000538475 ZNF625Q96I27 306 aaPredicted RBP4.83□□□□□ -1.64
USP28-207ENST00000538475 CHCHD7Q9BUK0 85 aa4.83□□□□□ -1.64
USP28-207ENST00000538475 SPTBN2O15020 2390 aa4.83□□□□□ -1.64
USP28-207ENST00000538475 XIRP2A4UGR9 3374 aa4.82□□□□□ -1.64
USP28-207ENST00000538475 RP1L1Q8IWN7 2480 aaPredicted RBP4.82□□□□□ -1.64
USP28-207ENST00000538475 IGHV3OR16-13A0A075B7E8 117 aa4.82□□□□□ -1.64
USP28-207ENST00000538475 IGHV3-74A0A0B4J1X5 117 aa4.82□□□□□ -1.64
USP28-207ENST00000538475 TRAV12-3A0A0B4J271 114 aa4.82□□□□□ -1.64
USP28-207ENST00000538475 TMEM89A2RUT3 159 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms