RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-208ENST00000536710 ASCC3Q8N3C0 2202 aaKnown RBP1.19□□□□□ -2.22
PRKDC-208ENST00000536710 DSPPQ9NZW4 1301 aa1.18□□□□□ -2.22
PRKDC-208ENST00000536710 ANKRD11Q6UB99 2663 aaPredicted RBP1.18□□□□□ -2.22
PRKDC-208ENST00000536710 TRAV36DV7A0A075B6V5 113 aa1.18□□□□□ -2.22
PRKDC-208ENST00000536710 TMEM189A5PLL7 270 aa1.18□□□□□ -2.22
PRKDC-208ENST00000536710 IFITM5A6NNB3 132 aa1.18□□□□□ -2.22
PRKDC-208ENST00000536710 DEGS1O15121 323 aa1.18□□□□□ -2.22
PRKDC-208ENST00000536710 IGHV3-30P01768 117 aa1.18□□□□□ -2.22
PRKDC-208ENST00000536710 SLC25A5P05141 298 aaKnown RBP1.18□□□□□ -2.22
PRKDC-208ENST00000536710 IGHV3-30-5P0DP03 117 aa1.18□□□□□ -2.22
PRKDC-208ENST00000536710 HMGA1P17096 107 aaKnown RBP1.18□□□□□ -2.22
PRKDC-208ENST00000536710 CMPK1P30085 196 aa1.18□□□□□ -2.22
PRKDC-208ENST00000536710 SDC4P31431 198 aa1.18□□□□□ -2.22
PRKDC-208ENST00000536710 PCBD1P61457 104 aa1.18□□□□□ -2.22
PRKDC-208ENST00000536710 QRFPP83859 136 aa1.18□□□□□ -2.22
PRKDC-208ENST00000536710 OR8B8Q15620 311 aa1.18□□□□□ -2.22
PRKDC-208ENST00000536710 CCSMST1Q4G0I0 132 aa1.18□□□□□ -2.22
PRKDC-208ENST00000536710 C10orf111Q8N326 155 aa1.18□□□□□ -2.22
PRKDC-208ENST00000536710 CCL19Q99731 98 aa1.18□□□□□ -2.22
PRKDC-208ENST00000536710 IGF2RP11717 2491 aa1.18□□□□□ -2.22
PRKDC-208ENST00000536710 PTPRZ1P23471 2315 aaPredicted RBP1.18□□□□□ -2.22
PRKDC-208ENST00000536710 ZFYVE26Q68DK2 2539 aa1.18□□□□□ -2.22
PRKDC-208ENST00000536710 UTP20O75691 2785 aaKnown RBP1.18□□□□□ -2.22
PRKDC-208ENST00000536710 CRYBG3Q68DQ2 2970 aa1.17□□□□□ -2.22
PRKDC-208ENST00000536710 FAM208BQ5VWN6 2430 aa1.17□□□□□ -2.22
PRKDC-208ENST00000536710 ANKRD36A6QL64 1941 aa1.17□□□□□ -2.22
PRKDC-208ENST00000536710 CNOT1A5YKK6 2376 aaKnown RBP1.17□□□□□ -2.22
PRKDC-208ENST00000536710 SPTBN2O15020 2390 aa1.17□□□□□ -2.22
PRKDC-208ENST00000536710 NBPF19A0A087WUL8 3843 aa1.17□□□□□ -2.22
PRKDC-208ENST00000536710 IGHV1-24A0A0C4DH33 117 aa1.17□□□□□ -2.22
PRKDC-208ENST00000536710 FAM92AA1XBS5 289 aa1.17□□□□□ -2.22
PRKDC-208ENST00000536710 CDC42EP2O14613 210 aa1.17□□□□□ -2.22
PRKDC-208ENST00000536710 TCRAP04437 139 aa1.17□□□□□ -2.22
PRKDC-208ENST00000536710 GYPBP06028 91 aa1.17□□□□□ -2.22
PRKDC-208ENST00000536710 PAEPP09466 180 aa1.17□□□□□ -2.22
PRKDC-208ENST00000536710 HSD17B12Q53GQ0 312 aa1.17□□□□□ -2.22
PRKDC-208ENST00000536710 OTOSQ8NHW6 89 aa1.17□□□□□ -2.22
PRKDC-208ENST00000536710 CSMD2Q7Z408 3487 aa1.17□□□□□ -2.22
PRKDC-208ENST00000536710 FLNCQ14315 2725 aa1.17□□□□□ -2.22
PRKDC-208ENST00000536710 TPRP12270 2363 aaKnown RBP1.16□□□□□ -2.22
PRKDC-208ENST00000536710 CSMD1Q96PZ7 3565 aa1.16□□□□□ -2.22
PRKDC-208ENST00000536710 CNTRLQ7Z7A1 2325 aa1.16□□□□□ -2.22
PRKDC-208ENST00000536710 ZFC3H1O60293 1989 aaKnown RBP1.16□□□□□ -2.22
PRKDC-208ENST00000536710 MT-ND4LP03901 98 aa1.16□□□□□ -2.22
PRKDC-208ENST00000536710 CCL4P13236 92 aa1.16□□□□□ -2.22
PRKDC-208ENST00000536710 ZNF720Q7Z2F6 126 aa1.16□□□□□ -2.22
PRKDC-208ENST00000536710 SPANXA1Q9NS26 97 aa1.16□□□□□ -2.22
PRKDC-208ENST00000536710 CELSR2Q9HCU4 2923 aa1.16□□□□□ -2.22
PRKDC-208ENST00000536710 CELSR1Q9NYQ6 3014 aa1.16□□□□□ -2.22
PRKDC-208ENST00000536710 CHD3Q12873 2000 aaKnown RBP1.16□□□□□ -2.22
PRKDC-208ENST00000536710 DCHS2Q6V1P9 2916 aa1.16□□□□□ -2.22
PRKDC-208ENST00000536710 MED12Q93074 2177 aa1.15□□□□□ -2.22
PRKDC-208ENST00000536710 MYO18BQ8IUG5 2567 aa1.15□□□□□ -2.22
PRKDC-208ENST00000536710 AKAP9Q99996 3911 aa1.15□□□□□ -2.22
PRKDC-208ENST00000536710 LRBAP50851 2863 aa1.15□□□□□ -2.22
PRKDC-208ENST00000536710 A0A1B0GX51 115 aa1.15□□□□□ -2.23
PRKDC-208ENST00000536710 IDO2Q6ZQW0 420 aa1.15□□□□□ -2.23
PRKDC-208ENST00000536710 PYDC1Q8WXC3 89 aa1.15□□□□□ -2.23
PRKDC-208ENST00000536710 AIF1LQ9BQI0 150 aa1.15□□□□□ -2.23
PRKDC-208ENST00000536710 C19orf12Q9NSK7 152 aa1.15□□□□□ -2.23
PRKDC-208ENST00000536710 COMMD3Q9UBI1 195 aa1.15□□□□□ -2.23
PRKDC-208ENST00000536710 FBN2P35556 2912 aa1.15□□□□□ -2.23
PRKDC-208ENST00000536710 FASNP49327 2511 aaKnown RBP1.15□□□□□ -2.23
PRKDC-208ENST00000536710 PTPRQQ9UMZ3 2332 aa1.15□□□□□ -2.23
PRKDC-208ENST00000536710 TEX15Q9BXT5 2789 aa1.14□□□□□ -2.23
PRKDC-208ENST00000536710 OTOGQ6ZRI0 2925 aa1.14□□□□□ -2.23
PRKDC-208ENST00000536710 MAST4O15021 2626 aa1.14□□□□□ -2.23
PRKDC-208ENST00000536710 APC2O95996 2303 aa1.14□□□□□ -2.23
PRKDC-208ENST00000536710 IL7P13232 177 aa1.14□□□□□ -2.23
PRKDC-208ENST00000536710 HIST1H1BP16401 226 aaKnown RBP1.14□□□□□ -2.23
PRKDC-208ENST00000536710 SPINT3P49223 89 aa1.14□□□□□ -2.23
PRKDC-208ENST00000536710 SNRPFP62306 86 aaKnown RBP1.14□□□□□ -2.23
PRKDC-208ENST00000536710 Q6ZS92 163 aa1.14□□□□□ -2.23
PRKDC-208ENST00000536710 DEFB124Q8NES8 71 aa1.14□□□□□ -2.23
PRKDC-208ENST00000536710 MRPL36Q9P0J6 103 aaKnown RBP1.14□□□□□ -2.23
PRKDC-208ENST00000536710 ZFHX3Q15911 3703 aa1.14□□□□□ -2.23
PRKDC-208ENST00000536710 PDZD2O15018 2839 aa1.14□□□□□ -2.23
PRKDC-208ENST00000536710 ZNF462Q96JM2 2506 aa1.14□□□□□ -2.23
PRKDC-208ENST00000536710 ADGRG4Q8IZF6 3080 aa1.14□□□□□ -2.23
PRKDC-208ENST00000536710 PRRC2CQ9Y520 2896 aaKnown RBP1.14□□□□□ -2.23
PRKDC-208ENST00000536710 ACACAQ13085 2346 aa1.14□□□□□ -2.23
PRKDC-208ENST00000536710 VPS13CQ709C8 3753 aa1.13□□□□□ -2.23
PRKDC-208ENST00000536710 ASXL3Q9C0F0 2248 aa1.13□□□□□ -2.23
PRKDC-208ENST00000536710 TACC2O95359 2948 aa1.13□□□□□ -2.23
PRKDC-208ENST00000536710 ZNF469Q96JG9 3925 aaPredicted RBP1.13□□□□□ -2.23
PRKDC-208ENST00000536710 PIEZO2Q9H5I5 2752 aa1.13□□□□□ -2.23
PRKDC-208ENST00000536710 PNMA8CA0A1B0GUJ8 204 aa1.13□□□□□ -2.23
PRKDC-208ENST00000536710 SPAARA0A1B0GVQ0 90 aa1.13□□□□□ -2.23
PRKDC-208ENST00000536710 PVALEFA0A1B0GWK0 134 aa1.13□□□□□ -2.23
PRKDC-208ENST00000536710 TMEM30CPA0ZSE6 113 aa1.13□□□□□ -2.23
PRKDC-208ENST00000536710 TNFSF15O95150 251 aa1.13□□□□□ -2.23
PRKDC-208ENST00000536710 IGKCP01834 107 aa1.13□□□□□ -2.23
PRKDC-208ENST00000536710 APODP05090 189 aa1.13□□□□□ -2.23
PRKDC-208ENST00000536710 CCDC153Q494R4 210 aa1.13□□□□□ -2.23
PRKDC-208ENST00000536710 SPINK9Q5DT21 86 aa1.13□□□□□ -2.23
PRKDC-208ENST00000536710 TCTE3Q8IZS6 198 aa1.13□□□□□ -2.23
PRKDC-208ENST00000536710 TSTD1Q8NFU3 115 aa1.13□□□□□ -2.23
PRKDC-208ENST00000536710 SPANXCQ9NY87 97 aa1.13□□□□□ -2.23
PRKDC-208ENST00000536710 U3KQA8 63 aa1.13□□□□□ -2.23
PRKDC-208ENST00000536710 PTPN13Q12923 2485 aa1.13□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms